Rroxscaffold_4G00297210

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
17152074 .. 17154353
2280 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00297210.1

Sequence Viewer

Length: 2070 bp
ATGCATGCTTATTTGATCAAAAAGGGATTTGATTTGGATGTATATTTGAATTGTGCATTGATTAATTTTTATGGGACTTGTTTGGGCATAGAAAGTTCGAACCAGTTATTTGATGAAATGCATAAGAAAGAAGATATGTTGTGGGATGAGGTTATCAAGCTCAACTCAAAGGAAGGGAGATGGGTGAAGGTTCTAGAATTGTTCAGGAATATGCAGTTGTCATTTGCTAAACCCAATAGTGCTACGATTATCAATGCGCTTCAAGCTTGTGGGAAAGTGAGAGCACTCAATGAAGGAAAGCAAATTCATGGGTATGTTTTAAGATGGGGATTAGAATCGAATTTTTCAATATGCAATTCCCTTATTAGCATGTACTCCAGAAATGGCAGACTAGAGTTAGCTAAAGCTGTTTTTGATTCAATGAATGATCATAACCTATCGTCATGGAACTCGATTATCTCTTCTTATACTGCACTTGGTTGCTTGAATGATGCTTGGATTGTTTACTATGAAATGGAGTTGTCTGGTGTCAAGCCGGACATTGTGACTTGGAATTGCCTTTTGTCCGCAGTTTCCGAATTGTGTTTGTTGAAACATGGGAAAGAAATTCATGGATTTGTAATTAGAAATGGGTTCGACTATGATGTTTATGTAGGAACTTCTTTAGTAGACATGTATGTGAAGAATAATTGTTTGTCCTTTGCTCAAAGTGTCTTTGATAACATGAAGAACAAAAACATTTTTGCTTGGAATTCCTTGATATCAGGGTATTCCTTCAAGGGTCTTTTTGAAGATGCTGAACAGCTATTAAACAGTATGAGTCAAGAAGGAATCAAACCGGACTTGGTGACATGGAATGGTTTGATTTCGGGTTGTTCACAAAATGAGAATCATGCCGAATCCCTCAAGTATTTTCTCCAAATGCAAGAAGATGGTATCAGGGCAAACTTTGCCACCATATCCAGCCTACTTAAAGCTTGTGCAGGACTATCTTTGTTGCGTAAAGGTGAAGAGATACACTGTCACAGCATACGGAAAGGTTTCGTTGAGGATGTATTTGTAGCCACAGCACTCATCGATATGTACAGCAAGGCAGGCAATTTCAGAAGTGCCTATGAGGTCTTTAGGATGATTAAAAACAAGACATTAGCTTCTTGGAATTGCATGATTATGGGATTTGCTACTTATGGCTCTGCAAAAGAGGCCATTTCTCTTTTCAATGAAATGTGCAGAGCTGGTCTGCAGCCAGATGCTATAACCTTCACAGCTTTGCTTTCTGGTTGCAAGAACTCAGGTTTAGTCGATGAAGGATGGAAGTTCTTCGATAGTATGAGCACAGATTACAACATAGCTCCAACTATTGAGCATTTCTCTTGCATGGTCGATATTCTTGCAAGAGCTGGTTATCTTGATGAAGCTTGGGATTTTATTCAAACGATGCCATTAAAGCCAGACGCCTCTATATGGGGTGCTTTTCTTGCTTCCTGCCTAACCCATAAGAACTTGGAGTTTGCAGAGACTGCAGCAAAGAATCTTTTTGAGTTGGAACCTCATAATCCAGCCAATTATGTCTTGATGATGAACTTATATTCTATATCAAACAGATGGGCGGATGTCGAACGCCTTAAAGATTTGATGAGGAAAGTAGGGGTGAAACACAGCCCTGTCTGGAGCTGGACACAAATTGATCAGAAAATCCATTTATTCTGCGCAGAAGGGAAACCTCATCCAGACGTGGGAGAAATATATTTTGAATTGTATCATTTGGTGTCCGAAATGAAGAAATTAGGCTATGAGCCTGACATTAGCTGTGTACATCAAAACATTGATGCCGTAGAGAAGAAGAAGATGCTGCTGAGTCACACAGAGAAACTGGCCATTACCTATGGACTGATGAAGATGAAAAATGGAGAACCTATCAGGGTGGTTAATAACACAAGGGTCTGTTCTGATTGTCATACTGCAGCAAAATACATGTCAGTGGTGCGAAAATGTGAGATTTTCCTCAAGGATGGTACTCGGTTTCACCACTTCAGGGAAGGGAAGTGCACCTGCAATGACTGCTGGTAA

Protein Analysis

689

Amino Acids

78.25

Weight (kDa)

6.33

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 145 - 190 1.4e-09 PPR repeat family
PPR_2 PF13041 245 - 293 6.5e-14 PPR repeat family
PPR PF01535 249 - 278 8.2e-07 PPR repeat
PPR_3 PF13812 269 - 328 4.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 280 - 328 2.4e-08 PPR repeat family
PPR PF01535 283 - 313 5.8e-06 PPR repeat
PPR_2 PF13041 384 - 429 5.6e-13 PPR repeat family
PPR PF01535 385 - 414 7.3e-06 PPR repeat
E_motif PF20431 499 - 561 7.2e-18 E motif
DYW_deaminase PF14432 597 - 689 5.6e-35 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01030
fragaria_vesca FvH4_7g16210
malus_domestica MD01G1078800.v1.1
prunus_persica Prupe.2G185700_v2.0.a1 Prupe.2G185700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359241
rosa_laevigata RLG00000027892
rosa_multiflora Rmu_ssc0000135.1_g000027
rosa_roxburghii Rroxscaffold_4G00297210
rosa_rugosa Rorug01G0268800
rosa_samantha Rh1AG282600 Rh1BG249000 Rh1CG266700 Rh1DG277800
rosa_wichuraiana Rw1G025080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2060
Acc16I TGCGCA 1 cut(s) 1711
Acc36I ACCTGC 1 cut(s) 2060
AccI GTMKAC 1 cut(s) 669
AciI CCGC 2 cut(s) 567, 1610
AcoI YGGCCR 1 cut(s) 1875
AcsI RAATTY 4 cut(s) 303, 340, 606, 751
AcuI CTGAAG 1 cut(s) 2017
AcyI GRCGYC 1 cut(s) 1455
AfaI GTAC 4 cut(s) 374, 1085, 1815, 2017
AfiI CCNNNNNNNGG 3 cut(s) 1464, 1736, 2035
AflIII ACRYGT 2 cut(s) 672, 1974
AjiI CACGTC 1 cut(s) 1735
Alw21I GWGCWC 3 cut(s) 286, 1337, 2051
Alw26I GTCTC 1 cut(s) 1511
Alw44I GTGCAC 1 cut(s) 2047
AlwNI CAGNNNCTG 1 cut(s) 1520
AoxI GGCC 2 cut(s) 1203, 1875
ApaLI GTGCAC 1 cut(s) 2047
ApeKI GCWGC 4 cut(s) 1243, 1523, 1852, 1964
ApoI RAATTY 4 cut(s) 303, 340, 606, 751
ArsI GACNNNNNNTTYG 2 cut(s) 1961, 1993
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 1040, 1319
AspLEI GCGC 2 cut(s) 259, 1712
AsuHPI GGTGA 5 cut(s) 196, 859, 1019, 1663, 2018
AsuII TTCGAA 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 2051
BalI TGGCCA 1 cut(s) 1877
Bbv12I GWGCWC 3 cut(s) 286, 1337, 2051
BbvI GCAGC 4 cut(s) 1255, 1535, 1839, 1976
BccI CCATC 6 cut(s) 174, 318, 926, 1305, 1599, 2006
BceAI ACGGC 1 cut(s) 1817
BcgI CGANNNNNNTGC 2 cut(s) 1373, 1407
BclI TGATCA 3 cut(s) 15, 427, 1687
BcoDI GTCTC 1 cut(s) 1511
BfaI CTAG 2 cut(s) 194, 392
BfmI CTRYAG 3 cut(s) 1241, 1521, 1962
BfuAI ACCTGC 1 cut(s) 2060
BisI GCNGC 4 cut(s) 1244, 1524, 1853, 1965
BlsI GCNGC 4 cut(s) 1245, 1525, 1854, 1966
BmgBI CACGTC 1 cut(s) 1735
BmiI GGNNCC 1 cut(s) 1548
BmsI GCATC 6 cut(s) 481, 784, 1240, 1428, 1819, 1839
BplI GAGNNNNNCTC 2 cut(s) 1355, 1387
BpmI CTGGAG 2 cut(s) 361, 1690
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 890, 1991
Bsa29I ATCGAT 1 cut(s) 1077
BsaBI GATNNNNATC 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 1455
BsaWI WCCGGW 1 cut(s) 838
Bsc4I CCNNNNNNNGG 3 cut(s) 1464, 1736, 2035
Bse1I ACTGG 2 cut(s) 103, 1878
Bse3DI GCAATG 1 cut(s) 2062
Bse8I GATNNNNATC 1 cut(s) 334
BseCI ATCGAT 1 cut(s) 1077
BseGI GGATG 8 cut(s) 43, 151, 1057, 1134, 1316, 1618, 1726, 2017
BseJI GATNNNNATC 1 cut(s) 334
BseLI CCNNNNNNNGG 3 cut(s) 1464, 1736, 2035
BseMI GCAATG 1 cut(s) 2062
BseMII CTCAG 2 cut(s) 1305, 1847
BseNI ACTGG 2 cut(s) 103, 1878
BseSI GKGCMC 1 cut(s) 2051
BseXI GCAGC 4 cut(s) 1255, 1535, 1839, 1976
BsgI GTGCAG 3 cut(s) 456, 1002, 1249
BshFI GGCC 2 cut(s) 1205, 1877
BshVI ATCGAT 1 cut(s) 1077
BsiHKAI GWGCWC 3 cut(s) 286, 1337, 2051
BsiSI CCGG 2 cut(s) 536, 839
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 3 cut(s) 1464, 1736, 2035
BsmAI GTCTC 1 cut(s) 1511
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 2 cut(s) 1205, 1877
Bsp119I TTCGAA 1 cut(s) 98
Bsp1286I GDGCHC 3 cut(s) 286, 1337, 2051
Bsp1407I TGTACA 2 cut(s) 1083, 1813
Bsp143I GATC 3 cut(s) 15, 427, 1687
BspACI CCGC 2 cut(s) 567, 1610
BspANI GGCC 2 cut(s) 1205, 1877
BspCNI CTCAG 2 cut(s) 1304, 1848
BspDI ATCGAT 1 cut(s) 1077
BspLI GGNNCC 1 cut(s) 1548
BspMAI CTGCAG 3 cut(s) 1245, 1525, 1966
BspMI ACCTGC 1 cut(s) 2060
BspT104I TTCGAA 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 2062
BsrGI TGTACA 2 cut(s) 1083, 1813
BsrI ACTGG 2 cut(s) 103, 1878
BssMI GATC 3 cut(s) 15, 427, 1687
BssNI GRCGYC 1 cut(s) 1455
Bst4CI ACNGT 2 cut(s) 815, 1022
Bst6I CTCTTC 2 cut(s) 466, 1005
BstACI GRCGYC 1 cut(s) 1455
BstAPI GCANNNNNTGC 3 cut(s) 950, 1520, 2061
BstAUI TGTACA 2 cut(s) 1083, 1813
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 6, 1096
BstDEI CTNAG 2 cut(s) 1291, 1856
BstF5I GGATG 8 cut(s) 43, 151, 1057, 1134, 1316, 1618, 1726, 2017
BstHHI GCGC 2 cut(s) 259, 1712
BstKTI GATC 3 cut(s) 18, 430, 1690
BstMAI GTCTC 1 cut(s) 1511
BstMBI GATC 3 cut(s) 15, 427, 1687
BstMWI GCNNNNNNNGC 8 cut(s) 263, 950, 1095, 1202, 1447, 1478, 1520, 2061
BstNSI RCATGY 4 cut(s) 8, 373, 676, 1978
BstSFI CTRYAG 3 cut(s) 1241, 1521, 1962
BstSLI GKGCMC 1 cut(s) 2051
BstV1I GCAGC 4 cut(s) 1255, 1535, 1839, 1976
Bsu15I ATCGAT 1 cut(s) 1077
BsuRI GGCC 2 cut(s) 1205, 1877
BsuTUI ATCGAT 1 cut(s) 1077
BtrI CACGTC 1 cut(s) 1735
BtsCI GGATG 8 cut(s) 43, 151, 1057, 1134, 1316, 1618, 1726, 2017
BtsIMutI CAGTG 2 cut(s) 1018, 1986
BveI ACCTGC 1 cut(s) 2060
Cac8I GCNNGC 2 cut(s) 6, 1096
CaiI CAGNNNCTG 1 cut(s) 1520
CfoI GCGC 2 cut(s) 259, 1712
ClaI ATCGAT 1 cut(s) 1077
CseI GACGC 1 cut(s) 1463
Csp6I GTAC 4 cut(s) 373, 1084, 1814, 2016
CviQI GTAC 4 cut(s) 373, 1084, 1814, 2016
DdeI CTNAG 2 cut(s) 1291, 1856
DpnI GATC 3 cut(s) 17, 429, 1689
DpnII GATC 3 cut(s) 15, 427, 1687
EaeI YGGCCR 1 cut(s) 1875
Eam1104I CTCTTC 2 cut(s) 466, 1005
EarI CTCTTC 2 cut(s) 466, 1005
EciI GGCGGA 1 cut(s) 1625
Eco32I GATATC 1 cut(s) 762
Eco57I CTGAAG 1 cut(s) 2017
EcoRI GAATTC 1 cut(s) 751
EcoRV GATATC 1 cut(s) 762
EcoT22I ATGCAT 2 cut(s) 6, 123
FaqI GGGAC 1 cut(s) 88
FbaI TGATCA 3 cut(s) 15, 427, 1687
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 4 cut(s) 1244, 1524, 1853, 1965
FokI GGATG 8 cut(s) 50, 158, 1064, 1141, 1323, 1625, 1713, 2024
Fsp4HI GCNGC 4 cut(s) 1244, 1524, 1853, 1965
FspBI CTAG 2 cut(s) 194, 392
FspI TGCGCA 1 cut(s) 1711
GlaI GCGC 2 cut(s) 258, 1711
GluI GCNGC 4 cut(s) 1244, 1524, 1853, 1965
GsuI CTGGAG 2 cut(s) 361, 1690
HaeIII GGCC 2 cut(s) 1205, 1877
HapII CCGG 2 cut(s) 536, 839
HgaI GACGC 1 cut(s) 1463
HhaI GCGC 2 cut(s) 259, 1712
Hin1I GRCGYC 1 cut(s) 1455
Hin6I GCGC 2 cut(s) 257, 1710
HinP1I GCGC 2 cut(s) 257, 1710
HindIII AAGCTT 3 cut(s) 264, 975, 1416
HinfI GANTC 8 cut(s) 335, 416, 820, 831, 889, 899, 1531, 1858
HpaII CCGG 2 cut(s) 536, 839
HphI GGTGA 5 cut(s) 196, 859, 1019, 1663, 2018
Hpy166II GTNNAC 5 cut(s) 505, 670, 878, 1814, 2049
Hpy188I TCNGA 5 cut(s) 577, 1106, 1692, 1774, 1951
Hpy188III TCNNGA 8 cut(s) 194, 205, 378, 824, 1409, 1573, 1669, 1730
Hpy8I GTNNAC 5 cut(s) 505, 670, 878, 1814, 2049
HpyAV CCTTC 9 cut(s) 167, 181, 287, 784, 821, 1270, 1301, 1709, 2033
HpyCH4III ACNGT 2 cut(s) 815, 1022
HpyCH4IV ACGT 1 cut(s) 1734
HpyF10VI GCNNNNNNNGC 8 cut(s) 263, 950, 1095, 1202, 1447, 1478, 1520, 2061
HpyF3I CTNAG 2 cut(s) 1291, 1856
HpySE526I ACGT 1 cut(s) 1734
Hsp92I GRCGYC 1 cut(s) 1455
HspAI GCGC 2 cut(s) 257, 1710
Ksp22I TGATCA 3 cut(s) 15, 427, 1687
Kzo9I GATC 3 cut(s) 15, 427, 1687
LmnI GCTCC 2 cut(s) 1357, 1671
Lsp1109I GCAGC 4 cut(s) 1255, 1535, 1839, 1976
LweI GCATC 6 cut(s) 481, 784, 1240, 1428, 1819, 1839
MaeI CTAG 2 cut(s) 194, 392
MaeII ACGT 1 cut(s) 1734
MaeIII GTNAC 4 cut(s) 544, 847, 1022, 1859
MalI GATC 3 cut(s) 17, 429, 1689
MboI GATC 3 cut(s) 15, 427, 1687
MhlI GDGCHC 3 cut(s) 286, 1337, 2051
MlsI TGGCCA 1 cut(s) 1877
MluNI TGGCCA 1 cut(s) 1877
MlyI GAGTC 2 cut(s) 829, 1867
MmeI TCCRAC 2 cut(s) 1379, 1524
Mox20I TGGCCA 1 cut(s) 1877
Mph1103I ATGCAT 2 cut(s) 6, 123
MroXI GAANNNNTTC 2 cut(s) 1040, 1319
MscI TGGCCA 1 cut(s) 1877
MseI TTAA 8 cut(s) 63, 320, 809, 972, 1134, 1445, 1626, 1929
MslI CAYNNNNRTG 5 cut(s) 312, 677, 1079, 1169, 1979
Msp20I TGGCCA 1 cut(s) 1877
MspI CCGG 2 cut(s) 536, 839
MwoI GCNNNNNNNGC 8 cut(s) 263, 950, 1095, 1202, 1447, 1478, 1520, 2061
NdeII GATC 3 cut(s) 15, 427, 1687
NlaIV GGNNCC 1 cut(s) 1548
NmuCI GTSAC 4 cut(s) 544, 847, 1022, 1859
NsbI TGCGCA 1 cut(s) 1711
NsiI ATGCAT 2 cut(s) 6, 123
NspI RCATGY 4 cut(s) 8, 373, 676, 1978
NspV TTCGAA 1 cut(s) 98
PaeI GCATGC 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 2060
PciI ACATGT 2 cut(s) 672, 1974
PdmI GAANNNNTTC 2 cut(s) 1040, 1319
PfeI GAWTC 6 cut(s) 335, 416, 831, 889, 899, 1531
PkrI GCNGC 4 cut(s) 1245, 1525, 1854, 1966
PleI GAGTC 2 cut(s) 828, 1866
PpsI GAGTC 2 cut(s) 828, 1866
PscI ACATGT 2 cut(s) 672, 1974
PshBI ATTAAT 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 1548
PstI CTGCAG 3 cut(s) 1245, 1525, 1966
PstNI CAGNNNCTG 1 cut(s) 1520
RsaI GTAC 4 cut(s) 374, 1085, 1815, 2017
RsaNI GTAC 4 cut(s) 373, 1084, 1814, 2016
RseI CAYNNNNRTG 5 cut(s) 312, 677, 1079, 1169, 1979
SaqAI TTAA 8 cut(s) 63, 320, 809, 972, 1134, 1445, 1626, 1929
SatI GCNGC 4 cut(s) 1244, 1524, 1853, 1965
Sau3AI GATC 3 cut(s) 15, 427, 1687
SchI GAGTC 2 cut(s) 829, 1867
SduI GDGCHC 3 cut(s) 286, 1337, 2051
SfaNI GCATC 6 cut(s) 481, 784, 1240, 1428, 1819, 1839
SfcI CTRYAG 3 cut(s) 1241, 1521, 1962
SfuI TTCGAA 1 cut(s) 98
SmiMI CAYNNNNRTG 5 cut(s) 312, 677, 1079, 1169, 1979
SmlI CTYRAG 2 cut(s) 905, 2006
SmoI CTYRAG 2 cut(s) 905, 2006
SphI GCATGC 1 cut(s) 8
SsiI CCGC 2 cut(s) 567, 1610
SspMI CTAG 2 cut(s) 194, 392
TaaI ACNGT 2 cut(s) 815, 1022
TaiI ACGT 1 cut(s) 1737
TaqI TCGA 9 cut(s) 98, 338, 452, 636, 1077, 1302, 1323, 1383, 1617
TatI WGTACW 3 cut(s) 372, 1083, 1813
TfiI GAWTC 6 cut(s) 335, 416, 831, 889, 899, 1531
Tru1I TTAA 8 cut(s) 63, 320, 809, 972, 1134, 1445, 1626, 1929
Tru9I TTAA 8 cut(s) 63, 320, 809, 972, 1134, 1445, 1626, 1929
TscAI CASTG 2 cut(s) 1025, 1986
TseFI GTSAC 4 cut(s) 544, 847, 1022, 1859
TseI GCWGC 4 cut(s) 1243, 1523, 1852, 1964
Tsp45I GTSAC 4 cut(s) 544, 847, 1022, 1859
TspGWI ACGGA 1 cut(s) 1048
TspRI CASTG 2 cut(s) 1025, 1986
VneI GTGCAC 1 cut(s) 2047
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 4 cut(s) 303, 340, 606, 751
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 4 cut(s) 8, 373, 676, 1978
XmiI GTMKAC 1 cut(s) 669
XmnI GAANNNNTTC 2 cut(s) 1040, 1319
XspI CTAG 2 cut(s) 194, 392
Zsp2I ATGCAT 2 cut(s) 6, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.