Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0016091

Physical Location & Seq

Genomic Coordinates Forward (+)

37791899 .. 37794628

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGCCAAACTAGCTCCATCTCACCTCCTTCAAAGCTCATTAAGCTCCAAGCCAACATCTTTGCCTAGACTGTCTTCAACCCTTACCTTGTTGGAGGACTTGGGTCAGTTGGGTGAGCTCAAGACTTTGAGTTCAGTGAAAGCAGTCCATGCCCAGATGATAAAAATGTCCAACAACAACAAAATGGATATAAAGGCAAAATCTTTGGCCACTTGTTACTTGGAATTTGGTGATTCTAGGTCAGCTGCAATGGCTTTCTTTGTGGGTTCTGCACATTATCTTCCATGGAGTTCTTTTCTAGAAGAGTTTAGAAGATATGGGAATGACCCAGAAGATGTTCTCAAGTTCTTTCTTGAGTTTCATAATAGGGGAGTAGTGTTTGATAGCAGAGTTCTTGGTTTTGTTTTGAAACTTTGTGGGAATTTGAAGGAGTTGTGGCTTGGGTTGGAAATGCATGCTTATTTGATCAAAAAGGGATTTGATTTGGATGTATATTTGAAATGTGCATTGATTAATTTTTATGGGACTTGTTTGGGCATAGAAAGTTCGAACCAGTTATTTGATGAAATGCATAAGAAAGAAGATATGTTGTGGGATGAGGTTATCAAGCTCAACTCAAAGAAAGGGAGATGGGTGAAGGTTCTAGAATTGTTCAGGAATATGCCGCTGTCATTTGCTAAACCCAATAGTGCTACGATTATCAATGCGCTTCAAGCTTGTGGGAAAGTGAGAGCACTCAATGAAGGAAAGCAAATTCATGGGTATGTTTTAAGATGGGGATTAGAATCGAATTTGTCAATATGCAATTCCCTTATTAGCATGTACTCCAGAAATGGCAGACTAGAATTAGCTAAAGCTGTTTTTGATTCAATGAATGATCATAAGTTATCGTCATGGAACTCGATTATCTCTTCTTATACTGCACTTGGTTGCTTGAATGATGCTTGGATTGTTTGCTATGAAATGGAGTTGTCTGATGTCAAGCCGGACATTGTGACTTGGAATTGCCTTTTGTCCGGTCATTCTCTTCATGGCTCGTATCAAGAAGTACTTGCCATCTTGAAGAGAATGCAAGATGCCGGGTTCAAGCCAAATTCAAGTTCCATTACTAGTGTTCTTCAAGCAGTTTCTGAATTGTGTTTGTTGAAACATGGGAAAGAAATTCATGGATTTGTAATTAGAAATGGGCTCGACTATGATGTTTATGTAGGAACTTCTTTAGTAGACATGTTTGTGAAGAATAATTGTTTGTCCTTTGCTCAAAGTGTCTTTGATAACATGAAGAACATAAACATTTTTGCTTGGAATTCCTTGATATCAGGGTATTCCTTCAAGGGTCTTTTTGAAGATGCTGAACAGCTATTAAACAGTATGAGTCAAAAAGGAATCAAACCGGACTTAGTGACATGGAATGGTTTGATTTCGGGTTATGCAATGAAGGGTCGCCATAAGGAAGCTATAGCGGCAATTCATCGGATGAAGAGTTCAGGGTTAACCCCTAATGTGGTTTCATGGACTGCTCTTATATCAGGTTGTTCACAAAATGAGAATCATGCCGAATCCCTCAAGTATTTTCTCCAAATGCAAGAAGATGGTATCAGGGCAAACTTTGCCACCATATCCAGCCTACTTAAAGCTTGTGCAGGACTATCTTTGTTGCGTAAGGGTGAAGAGATACACTGTCACAGCATACGGAAAGGTTTTGTTAAGGATGTATTTGTAGCCACAGCACTCATCGATATGTACAGCAAGGCAGGCAATTTCAGAAGTGCCTATGAGGTCTTTAGGATGATTAAAAACAAGACATTAGCTTCTTGGAATTGCATGATTATGGGATTTGCTACTTATGGCTCTGCGAAAGAGGCCATTTCTCTTTTCAATGAAATGCGCGGAGCTGGTCTGCAGCCAGATGCTATAACCTTCACAGCTTTGCTTTCTGGTTGCAAGAACTCAGGTTTAGTCGATGAAGGATGGAAGTTCTTCGATAGTATGAGCACAGATTACAACATAGCTCCAACTATTGAGCATTTCTCTTGCATGGTAGATATTCTTGCAAGAGCTGGTTATCTTGATGAAGCTTGGGATTTTATTCAAACGATGCCATTAAAGCCGGACGCCTCTATATGGGGTGCTTTTCTTGCTTCCTGCGTAACCCATAAGAACTTGGAGTTTGCAGAGACTGCAGCAAAGAATCTTTTGGAGTTGGAACCTCATAATCCAGCCAATTATGTCTTGATGATGAACTTATATTCTATATCAAACAGATGGGCGGATGTCGAACGCCTTAAAGATTTGACGAGGAAAGTAGGGGTGAAACACAGCCCTGTATGGAGCTGGACACAAATTGATCAGAAAATCCATATGTTCTGCGCAGAAGGGAAACCTCATCCAGACTTGGGAGAAATATATTTTGAATTGTATCATTTGGTTTCCGAAATGAAGAAATTAGGCTATGAGCCTGACATTAGCTGCGTACATCAAAACATTGATGCCGTAGAGAAGAAGAAGATGCTGCTGAGTCACACAGAGAAACTGGCCATTACCTATGGACTGATGAAGATGAAAAATGGAGAACCTATCAGGGTGGTTAATAACACAAGGGTCTGTTCTGATTGTCATACTGCAGCAAAATACATGTCAGTGGTGCGAAAATGCGAGATTTTCCTCAAGGATGGTACTCGGTTTCACCACTTCAGGGAAGGGAAGTGCACCTGCAATGACTGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

909

Amino Acids

102.35

Weight (kDa)

8.22

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	320 - 368	4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	329 - 375	2.2e-08	PPR repeat family
PPR_2	PF13041	431 - 478	1.5e-13	PPR repeat family
PPR	PF01535	434 - 463	7.1e-07	PPR repeat
PPR_3	PF13812	454 - 513	4.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	461 - 494	1.7e-06	PPR repeat
PPR_2	PF13041	465 - 512	2.3e-12	PPR repeat family
PPR	PF01535	468 - 498	2.1e-06	PPR repeat
PPR_3	PF13812	491 - 548	4.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	500 - 548	9.1e-09	PPR repeat family
PPR	PF01535	503 - 533	8.5e-06	PPR repeat
PPR_2	PF13041	604 - 649	3.3e-12	PPR repeat family
PPR	PF01535	605 - 634	8.9e-06	PPR repeat
E_motif	PF20431	719 - 781	1.8e-16	E motif
DYW_deaminase	PF14432	817 - 909	8.3e-35	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01030
fragaria_vesca	FvH4_7g16210
malus_domestica	MD01G1078800.v1.1
prunus_persica	Prupe.2G185700_v2.0.a1 Prupe.2G185700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359241
rosa_laevigata	RLG00000027892
rosa_multiflora	Rmu_ssc0000135.1_g000027
rosa_roxburghii	Rroxscaffold_4G00297210
rosa_rugosa	Rorug01G0268800
rosa_samantha	Rh1AG282600 Rh1BG249000 Rh1CG266700 Rh1DG277800
rosa_wichuraiana	Rw1G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2720
Acc16I	TGCGCA	1 cut(s)	2371
Acc36I	ACCTGC	1 cut(s)	2720
AccI	GTMKAC	1 cut(s)	1224
AccII	CGCG	1 cut(s)	1890
AciI	CCGC	4 cut(s)	665, 1463, 1890, 2270
AcoI	YGGCCR	3 cut(s)	3, 207, 2535
AcsI	RAATTY	7 cut(s)	224, 421, 753, 790, 1093, 1161, 1306
AcuI	CTGAAG	1 cut(s)	2677
AcyI	GRCGYC	1 cut(s)	2115
AfaI	GTAC	5 cut(s)	824, 1050, 1745, 2475, 2677
AfiI	CCNNNNNNNGG	4 cut(s)	1504, 2124, 2396, 2695
AflIII	ACRYGT	2 cut(s)	1227, 2634
AhlI	ACTAGT	1 cut(s)	1109
AjuI	GAANNNNNNNTTGG	2 cut(s)	1084, 1116
AloI	GAACNNNNNNTCC	2 cut(s)	1468, 1500
Alw21I	GWGCWC	4 cut(s)	120, 736, 1997, 2711
Alw26I	GTCTC	1 cut(s)	2171
Alw44I	GTGCAC	1 cut(s)	2707
AlwNI	CAGNNNCTG	2 cut(s)	1130, 2180
AoxI	GGCC	4 cut(s)	3, 207, 1863, 2535
ApaLI	GTGCAC	1 cut(s)	2707
ApeKI	GCWGC	6 cut(s)	245, 1903, 2183, 2469, 2512, 2624
ApoI	RAATTY	7 cut(s)	224, 421, 753, 790, 1093, 1161, 1306
ArsI	GACNNNNNNTTYG	2 cut(s)	2621, 2653
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	2 cut(s)	336, 1979
AspLEI	GCGC	3 cut(s)	709, 1890, 2372
AsuC2I	CCSGG	1 cut(s)	1081
AsuHPI	GGTGA	7 cut(s)	14, 125, 242, 646, 1679, 2323, 2678
AsuII	TTCGAA	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	2711
BalI	TGGCCA	3 cut(s)	5, 209, 2537
BanII	GRGCYC	2 cut(s)	120, 1191
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	4 cut(s)	120, 736, 1997, 2711
BbvI	GCAGC	6 cut(s)	232, 1915, 2195, 2456, 2499, 2636
BccI	CCATC	8 cut(s)	25, 624, 768, 1064, 1586, 1965, 2259, 2666
BceAI	ACGGC	1 cut(s)	2477
BclI	TGATCA	3 cut(s)	465, 877, 2347
BcnI	CCSGG	1 cut(s)	1081
BcoDI	GTCTC	1 cut(s)	2171
BcuI	ACTAGT	1 cut(s)	1109
BfaI	CTAG	7 cut(s)	11, 66, 237, 299, 644, 842, 1110
BfmI	CTRYAG	4 cut(s)	1458, 1901, 2181, 2622
BfuAI	ACCTGC	1 cut(s)	2720
BisI	GCNGC	8 cut(s)	246, 665, 1464, 1904, 2184, 2470, 2513, 2625
BlsI	GCNGC	8 cut(s)	247, 666, 1465, 1905, 2185, 2471, 2514, 2626
BmcAI	AGTACT	1 cut(s)	1050
Bme1390I	CCNGG	1 cut(s)	1081
BmiI	GGNNCC	1 cut(s)	2208
BmrFI	CCNGG	1 cut(s)	1081
BmsI	GCATC	7 cut(s)	931, 1066, 1339, 1900, 2088, 2479, 2499
BoxI	GACNNNNGTC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	2015, 2047
BpmI	CTGGAG	1 cut(s)	811
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	5 cut(s)	104, 326, 374, 1550, 2651
BpuMI	CCSGG	1 cut(s)	1081
Bsa29I	ATCGAT	1 cut(s)	1737
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	2115
BsaJI	CCNNGG	1 cut(s)	284
BsaWI	WCCGGW	2 cut(s)	1016, 1393
Bsc4I	CCNNNNNNNGG	4 cut(s)	1504, 2124, 2396, 2695
Bse1I	ACTGG	2 cut(s)	553, 2538
Bse3DI	GCAATG	3 cut(s)	255, 1440, 2722
Bse8I	GATNNNNATC	1 cut(s)	784
BseCI	ATCGAT	1 cut(s)	1737
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	9 cut(s)	493, 601, 1482, 1717, 1794, 1976, 2278, 2386, 2677
BseJI	GATNNNNATC	1 cut(s)	784
BseLI	CCNNNNNNNGG	4 cut(s)	1504, 2124, 2396, 2695
BseMI	GCAATG	3 cut(s)	255, 1440, 2722
BseMII	CTCAG	2 cut(s)	1965, 2507
BseNI	ACTGG	2 cut(s)	553, 2538
BseSI	GKGCMC	1 cut(s)	2711
BseXI	GCAGC	6 cut(s)	232, 1915, 2195, 2456, 2499, 2636
BsgI	GTGCAG	3 cut(s)	255, 906, 1662
Bsh1236I	CGCG	1 cut(s)	1890
BshFI	GGCC	4 cut(s)	5, 209, 1865, 2537
BshVI	ATCGAT	1 cut(s)	1737
BsiHKAI	GWGCWC	4 cut(s)	120, 736, 1997, 2711
BsiSI	CCGG	5 cut(s)	986, 1017, 1080, 1394, 2111
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	4 cut(s)	1504, 2124, 2396, 2695
BsmAI	GTCTC	1 cut(s)	2171
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	1074
BsnI	GGCC	4 cut(s)	5, 209, 1865, 2537
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	5 cut(s)	120, 736, 1191, 1997, 2711
Bsp1407I	TGTACA	1 cut(s)	1743
Bsp143I	GATC	3 cut(s)	465, 877, 2347
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	4 cut(s)	665, 1463, 1890, 2270
BspANI	GGCC	4 cut(s)	5, 209, 1865, 2537
BspCNI	CTCAG	2 cut(s)	1964, 2508
BspDI	ATCGAT	1 cut(s)	1737
BspFNI	CGCG	1 cut(s)	1890
BspLI	GGNNCC	1 cut(s)	2208
BspMAI	CTGCAG	3 cut(s)	1905, 2185, 2626
BspMI	ACCTGC	1 cut(s)	2720
BspT104I	TTCGAA	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	255, 1440, 2722
BsrGI	TGTACA	1 cut(s)	1743
BsrI	ACTGG	2 cut(s)	553, 2538
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	3 cut(s)	465, 877, 2347
BssNI	GRCGYC	1 cut(s)	2115
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	72, 1370, 1682
Bst6I	CTCTTC	6 cut(s)	297, 916, 1032, 1058, 1475, 1665
BstACI	GRCGYC	1 cut(s)	2115
BstAPI	GCANNNNNTGC	4 cut(s)	149, 1610, 2180, 2721
BstAUI	TGTACA	1 cut(s)	1743
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	456, 1756
BstDEI	CTNAG	3 cut(s)	1399, 1951, 2516
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	9 cut(s)	493, 601, 1482, 1717, 1794, 1976, 2278, 2386, 2677
BstFNI	CGCG	1 cut(s)	1890
BstHHI	GCGC	3 cut(s)	709, 1890, 2372
BstKTI	GATC	3 cut(s)	468, 880, 2350
BstMAI	GTCTC	1 cut(s)	2171
BstMBI	GATC	3 cut(s)	465, 877, 2347
BstNSI	RCATGY	4 cut(s)	458, 823, 1231, 2638
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	1079
BstSFI	CTRYAG	4 cut(s)	1458, 1901, 2181, 2622
BstSLI	GKGCMC	1 cut(s)	2711
BstUI	CGCG	1 cut(s)	1890
BstV1I	GCAGC	6 cut(s)	232, 1915, 2195, 2456, 2499, 2636
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	1737
BsuRI	GGCC	4 cut(s)	5, 209, 1865, 2537
BsuTUI	ATCGAT	1 cut(s)	1737
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	9 cut(s)	493, 601, 1482, 1717, 1794, 1976, 2278, 2386, 2677
BtsIMutI	CAGTG	3 cut(s)	141, 1678, 2646
BveI	ACCTGC	1 cut(s)	2720
Cac8I	GCNNGC	2 cut(s)	456, 1756
CaiI	CAGNNNCTG	2 cut(s)	1130, 2180
CfoI	GCGC	3 cut(s)	709, 1890, 2372
ClaI	ATCGAT	1 cut(s)	1737
CseI	GACGC	1 cut(s)	2123
Csp6I	GTAC	5 cut(s)	823, 1049, 1744, 2474, 2676
CviQI	GTAC	5 cut(s)	823, 1049, 1744, 2474, 2676
DdeI	CTNAG	3 cut(s)	1399, 1951, 2516
DpnI	GATC	3 cut(s)	467, 879, 2349
DpnII	GATC	3 cut(s)	465, 877, 2347
EaeI	YGGCCR	3 cut(s)	3, 207, 2535
Eam1104I	CTCTTC	6 cut(s)	297, 916, 1032, 1058, 1475, 1665
EarI	CTCTTC	6 cut(s)	297, 916, 1032, 1058, 1475, 1665
EciI	GGCGGA	1 cut(s)	2285
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	2 cut(s)	120, 1191
Eco32I	GATATC	1 cut(s)	1317
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	2677
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	1306
EcoRV	GATATC	1 cut(s)	1317
EcoT14I	CCWWGG	1 cut(s)	284
EcoT22I	ATGCAT	2 cut(s)	456, 573
EcoT38I	GRGCYC	2 cut(s)	120, 1191
ErhI	CCWWGG	1 cut(s)	284
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FaqI	GGGAC	1 cut(s)	538
FauNDI	CATATG	1 cut(s)	2361
FbaI	TGATCA	3 cut(s)	465, 877, 2347
FblI	GTMKAC	1 cut(s)	1224
Fnu4HI	GCNGC	8 cut(s)	246, 665, 1464, 1904, 2184, 2470, 2513, 2625
FokI	GGATG	9 cut(s)	500, 608, 1489, 1724, 1801, 1983, 2285, 2373, 2684
FriOI	GRGCYC	2 cut(s)	120, 1191
Fsp4HI	GCNGC	8 cut(s)	246, 665, 1464, 1904, 2184, 2470, 2513, 2625
FspBI	CTAG	7 cut(s)	11, 66, 237, 299, 644, 842, 1110
FspI	TGCGCA	1 cut(s)	2371
GlaI	GCGC	3 cut(s)	708, 1889, 2371
GluI	GCNGC	8 cut(s)	246, 665, 1464, 1904, 2184, 2470, 2513, 2625
GsuI	CTGGAG	1 cut(s)	811
HaeIII	GGCC	4 cut(s)	5, 209, 1865, 2537
HapII	CCGG	5 cut(s)	986, 1017, 1080, 1394, 2111
HgaI	GACGC	1 cut(s)	2123
HhaI	GCGC	3 cut(s)	709, 1890, 2372
Hin1I	GRCGYC	1 cut(s)	2115
Hin6I	GCGC	3 cut(s)	707, 1888, 2370
HinP1I	GCGC	3 cut(s)	707, 1888, 2370
HincII	GTYRAC	1 cut(s)	1494
HindII	GTYRAC	1 cut(s)	1494
HindIII	AAGCTT	3 cut(s)	714, 1635, 2076
HinfI	GANTC	9 cut(s)	233, 785, 866, 1375, 1386, 1549, 1559, 2191, 2518
HpaI	GTTAAC	1 cut(s)	1494
HpaII	CCGG	5 cut(s)	986, 1017, 1080, 1394, 2111
HphI	GGTGA	7 cut(s)	14, 125, 242, 646, 1679, 2323, 2678
Hpy166II	GTNNAC	4 cut(s)	1225, 1494, 1538, 2709
Hpy188I	TCNGA	7 cut(s)	976, 1132, 1476, 1766, 2352, 2434, 2611
Hpy8I	GTNNAC	4 cut(s)	1225, 1494, 1538, 2709
HpyCH4III	ACNGT	3 cut(s)	72, 1370, 1682
HpyF3I	CTNAG	3 cut(s)	1399, 1951, 2516
Hsp92I	GRCGYC	1 cut(s)	2115
HspAI	GCGC	3 cut(s)	707, 1888, 2370
Ksp22I	TGATCA	3 cut(s)	465, 877, 2347
KspAI	GTTAAC	1 cut(s)	1494
Kzo9I	GATC	3 cut(s)	465, 877, 2347
LmnI	GCTCC	5 cut(s)	19, 50, 1892, 2017, 2331
Lsp1109I	GCAGC	6 cut(s)	232, 1915, 2195, 2456, 2499, 2636
LweI	GCATC	7 cut(s)	931, 1066, 1339, 1900, 2088, 2479, 2499
MaeI	CTAG	7 cut(s)	11, 66, 237, 299, 644, 842, 1110
MaeIII	GTNAC	6 cut(s)	215, 994, 1402, 1682, 2149, 2519
MalI	GATC	3 cut(s)	467, 879, 2349
MboI	GATC	3 cut(s)	465, 877, 2347
MhlI	GDGCHC	5 cut(s)	120, 736, 1191, 1997, 2711
MlsI	TGGCCA	3 cut(s)	5, 209, 2537
MluNI	TGGCCA	3 cut(s)	5, 209, 2537
MlyI	GAGTC	2 cut(s)	1384, 2527
MmeI	TCCRAC	5 cut(s)	72, 195, 426, 2039, 2184
Mox20I	TGGCCA	3 cut(s)	5, 209, 2537
Mph1103I	ATGCAT	2 cut(s)	456, 573
MroXI	GAANNNNTTC	2 cut(s)	336, 1979
MscI	TGGCCA	3 cut(s)	5, 209, 2537
MslI	CAYNNNNRTG	5 cut(s)	762, 1232, 1739, 1829, 2639
Msp20I	TGGCCA	3 cut(s)	5, 209, 2537
MspA1I	CMGCKG	2 cut(s)	245, 667
MspI	CCGG	5 cut(s)	986, 1017, 1080, 1394, 2111
MspR9I	CCNGG	1 cut(s)	1081
Mva1269I	GAATGC	1 cut(s)	1074
MvnI	CGCG	1 cut(s)	1890
NciI	CCSGG	1 cut(s)	1081
NcoI	CCATGG	1 cut(s)	284
NdeI	CATATG	1 cut(s)	2361
NdeII	GATC	3 cut(s)	465, 877, 2347
NlaIV	GGNNCC	1 cut(s)	2208
NmuCI	GTSAC	4 cut(s)	994, 1402, 1682, 2519
NsbI	TGCGCA	1 cut(s)	2371
NsiI	ATGCAT	2 cut(s)	456, 573
NspI	RCATGY	4 cut(s)	458, 823, 1231, 2638
NspV	TTCGAA	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	2720
PciI	ACATGT	2 cut(s)	1227, 2634
PctI	GAATGC	1 cut(s)	1074
PdmI	GAANNNNTTC	2 cut(s)	336, 1979
PfeI	GAWTC	7 cut(s)	233, 785, 866, 1386, 1549, 1559, 2191
PkrI	GCNGC	8 cut(s)	247, 666, 1465, 1905, 2185, 2471, 2514, 2626
PleI	GAGTC	2 cut(s)	1383, 2526
PpsI	GAGTC	2 cut(s)	1383, 2526
PscI	ACATGT	2 cut(s)	1227, 2634
PshAI	GACNNNNGTC	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	2208
PstI	CTGCAG	3 cut(s)	1905, 2185, 2626
PstNI	CAGNNNCTG	2 cut(s)	1130, 2180
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	824, 1050, 1745, 2475, 2677
RsaNI	GTAC	5 cut(s)	823, 1049, 1744, 2474, 2676
RseI	CAYNNNNRTG	5 cut(s)	762, 1232, 1739, 1829, 2639
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	8 cut(s)	246, 665, 1464, 1904, 2184, 2470, 2513, 2625
Sau3AI	GATC	3 cut(s)	465, 877, 2347
ScaI	AGTACT	1 cut(s)	1050
SchI	GAGTC	2 cut(s)	1384, 2527
ScrFI	CCNGG	1 cut(s)	1081
SduI	GDGCHC	5 cut(s)	120, 736, 1191, 1997, 2711
SfaNI	GCATC	7 cut(s)	931, 1066, 1339, 1900, 2088, 2479, 2499
SfcI	CTRYAG	4 cut(s)	1458, 1901, 2181, 2622
SfuI	TTCGAA	1 cut(s)	548
SmiMI	CAYNNNNRTG	5 cut(s)	762, 1232, 1739, 1829, 2639
SmlI	CTYRAG	5 cut(s)	119, 341, 353, 1565, 2666
SmoI	CTYRAG	5 cut(s)	119, 341, 353, 1565, 2666
SpeI	ACTAGT	1 cut(s)	1109
SphI	GCATGC	1 cut(s)	458
SsiI	CCGC	4 cut(s)	665, 1463, 1890, 2270
SspMI	CTAG	7 cut(s)	11, 66, 237, 299, 644, 842, 1110
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	1079
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	72, 1370, 1682
TaqI	TCGA	8 cut(s)	548, 788, 902, 1191, 1737, 1962, 1983, 2277
TatI	WGTACW	3 cut(s)	822, 1048, 1743
TauI	GCSGC	2 cut(s)	667, 1466
TfiI	GAWTC	7 cut(s)	233, 785, 866, 1386, 1549, 1559, 2191
TscAI	CASTG	3 cut(s)	141, 1685, 2646
TseFI	GTSAC	4 cut(s)	994, 1402, 1682, 2519
TseI	GCWGC	6 cut(s)	245, 1903, 2183, 2469, 2512, 2624
Tsp45I	GTSAC	4 cut(s)	994, 1402, 1682, 2519
TspGWI	ACGGA	1 cut(s)	1708
TspRI	CASTG	3 cut(s)	141, 1685, 2646
VneI	GTGCAC	1 cut(s)	2707
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	7 cut(s)	224, 421, 753, 790, 1093, 1161, 1306
XbaI	TCTAGA	2 cut(s)	298, 643
XceI	RCATGY	4 cut(s)	458, 823, 1231, 2638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	1224
XmnI	GAANNNNTTC	2 cut(s)	336, 1979
XspI	CTAG	7 cut(s)	11, 66, 237, 299, 644, 842, 1110
ZrmI	AGTACT	1 cut(s)	1050
Zsp2I	ATGCAT	2 cut(s)	456, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.