Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012649

Physical Location & Seq

Genomic Coordinates Reverse (-)

18897041 .. 18900609

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1082600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTATAAACCGAACCACCAGAATAATCTAGAAATCAAGCGGCACGAGGATAATATTAAGTTCCTTCAGAATGAGATAAACCGCTTAGGTGAATCTATACTGGAATCGCAAGGTAGTCTTGCTAAGCATCAATCTGCCAATGGTATTGTAATAACAAATGAAAATGGTCCTACTGCTGAGGAGGATGACCAAATATTGCGGCACGAAAAATCTGCGGCTGGTTTATTGTGCAGGCTGAAACTGTTTGAATCACAGCATGCAACTCAGGCTTTGAATTTGGCTCTGACAAAGGATGTGCTGGGTATTGTTGGCATTGTTGCCACACTTGGCAGAGTTGACGATGACAACCTTAGCAGGCTTCTCTCGGAATACTTGGGACAGCAAACTATGCTAGCGATTGTATGCAGGACAAATGAAGCTGTTATGGTTCTAGAGAAGTATGATGGGGATGCGACAATACTCACCAGCGCCGGCATACATGGTCTAGGAGCTTCTATTGGGAAGAGCATAAAAGGGCGCTTTCTGGTCATATGTCTAGATGAATTGAGTCTATATGTTGGGGGGTTTGTAGCTGATGATCCACAAAGGAAGCTTGATATTCCCAAACCACAGCTACCAAATGGGGAGTGTCCGCATGGCTTTCTTGATTATGCAGTGAACGCGATCAATCTGGATAGCAATAACTTAGTTAATGTCACCAGCAGCGGGCATGGTCTCAGAGAGACACTATTCTATAGTCTCCTTTCTCGCCTCCAAATATACAGAACCAGAGCGGAGATGCTTCTCGCTCTCCCATGCATAAATCATGGAGCACTGTCTTTAGATGGCGGGATTATCAAAAAGAGTGGCGTGTTCATCCTGGGAAGCAGAGATATAGAGATCAAGTTTCTTGCAAAATCTGGAGAACCTAGTATGACTGTAAACTACGACAAAACTGAGGATATGATCAAGAAGCTGAAATTGAAGCGAACGCATGTTACTGAGGATATGCAAAGAGAACAAGAATTGTTGGACTTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.56

Weight (kDa)

5.84

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g16780 FvH4_7g16780 FvH4_7g16780 FvH4_7g16780 FvH4_7g16780
malus_domestica	MD01G1082600.v1.1 MD07G1150900.v1.1
prunus_persica	Prupe.2G190000_v2.0.a1
pyrus_communis	pycom07g14920
rosa_chinensis	RchiOBHm_Chr1g0359991
rosa_laevigata	RLG00000027842
rosa_multiflora	Rmu_ssc0000368.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296590
rosa_rugosa	Rorug01G0274100 Rorug01G0274200
rosa_samantha	Rh1AG288200 Rh1BG253600 Rh1CG271100 Rh1DG282600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	773
AccII	CGCG	1 cut(s)	662
AciI	CCGC	8 cut(s)	40, 82, 199, 215, 632, 705, 773, 828
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	705
AgsI	TTSAA	3 cut(s)	248, 274, 964
AjnI	CCWGG	1 cut(s)	858
AluBI	AGCT	6 cut(s)	419, 491, 572, 592, 613, 955
AluI	AGCT	6 cut(s)	419, 491, 572, 592, 613, 955
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	3 cut(s)	716, 719, 743
AlwI	GGATC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	702
ApoI	RAATTY	1 cut(s)	274
AspLEI	GCGC	2 cut(s)	470, 519
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	101, 454, 688
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	814
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	714
BccI	CCATC	2 cut(s)	437, 818
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	860
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	3 cut(s)	716, 719, 743
BfaI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 909
BfmI	CTRYAG	1 cut(s)	733
BfoI	RGCGCY	2 cut(s)	471, 520
BisI	GCNGC	4 cut(s)	41, 200, 216, 703
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	4 cut(s)	42, 201, 217, 704
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	860
BmsI	GCATC	3 cut(s)	136, 439, 768
BmtI	GCTAGC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	3 cut(s)	85, 177, 350
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	4 cut(s)	190, 298, 454, 855
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMII	CTCAG	5 cut(s)	168, 278, 730, 927, 972
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	714
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	3 cut(s)	716, 719, 743
BsmFI	GGGAC	1 cut(s)	390
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp143I	GATC	4 cut(s)	577, 663, 879, 945
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	8 cut(s)	40, 82, 199, 215, 632, 705, 773, 828
BspCNI	CTCAG	5 cut(s)	169, 277, 729, 928, 973
BspFNI	CGCG	1 cut(s)	662
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	719
BsrBI	CCGCTC	1 cut(s)	773
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	4 cut(s)	577, 663, 879, 945
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	3 cut(s)	243, 816, 919
Bst6I	CTCTTC	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	6 cut(s)	233, 258, 356, 393, 472, 707
BstDEI	CTNAG	9 cut(s)	85, 123, 177, 264, 350, 685, 716, 936, 981
BstF5I	GGATG	4 cut(s)	190, 298, 454, 855
BstFNI	CGCG	1 cut(s)	662
BstH2I	RGCGCY	2 cut(s)	471, 520
BstHHI	GCGC	2 cut(s)	470, 519
BstKTI	GATC	4 cut(s)	580, 666, 882, 948
BstMAI	GTCTC	3 cut(s)	716, 719, 743
BstMBI	GATC	4 cut(s)	577, 663, 879, 945
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 388, 659
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	2 cut(s)	260, 977
BstSCI	CCNGG	1 cut(s)	858
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	1 cut(s)	714
BtsCI	GGATG	4 cut(s)	190, 298, 454, 855
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	660, 812
Cac8I	GCNNGC	6 cut(s)	233, 258, 356, 393, 472, 707
CfoI	GCGC	2 cut(s)	470, 519
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	167
CspCI	CAANNNNNGTGG	2 cut(s)	826, 861
CviAII	CATG	7 cut(s)	257, 479, 635, 710, 795, 806, 974
DdeI	CTNAG	9 cut(s)	85, 123, 177, 264, 350, 685, 716, 936, 981
DpnI	GATC	4 cut(s)	579, 665, 881, 947
DpnII	GATC	4 cut(s)	577, 663, 879, 945
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	858
EcoT22I	ATGCAT	1 cut(s)	800
FaeI	CATG	7 cut(s)	260, 482, 638, 713, 798, 809, 977
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	7 cut(s)	256, 478, 634, 709, 794, 805, 973
FauI	CCCGC	2 cut(s)	698, 821
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	4 cut(s)	41, 200, 216, 703
FokI	GGATG	4 cut(s)	197, 305, 461, 842
Fsp4HI	GCNGC	4 cut(s)	41, 200, 216, 703
FspBI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 909
GlaI	GCGC	2 cut(s)	469, 518
GluI	GCNGC	4 cut(s)	41, 200, 216, 703
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	921
HaeII	RGCGCY	2 cut(s)	471, 520
HapII	CCGG	1 cut(s)	471
HhaI	GCGC	2 cut(s)	470, 519
Hin1II	CATG	7 cut(s)	260, 482, 638, 713, 798, 809, 977
Hin6I	GCGC	2 cut(s)	468, 517
HinP1I	GCGC	2 cut(s)	468, 517
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	92, 104, 248, 547
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	3 cut(s)	101, 454, 688
Hpy166II	GTNNAC	3 cut(s)	337, 658, 922
Hpy188I	TCNGA	4 cut(s)	69, 285, 367, 719
Hpy188III	TCNNGA	7 cut(s)	29, 431, 536, 644, 671, 900, 949
Hpy8I	GTNNAC	3 cut(s)	337, 658, 922
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	3 cut(s)	243, 816, 919
HpyCH4V	TGCA	7 cut(s)	231, 260, 405, 653, 798, 893, 991
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 388, 659
HpyF3I	CTNAG	9 cut(s)	85, 123, 177, 264, 350, 685, 716, 936, 981
Hsp92II	CATG	7 cut(s)	260, 482, 638, 713, 798, 809, 977
HspAI	GCGC	2 cut(s)	468, 517
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	4 cut(s)	577, 663, 879, 945
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	2 cut(s)	488, 809
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	3 cut(s)	136, 439, 768
MaeI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 909
MaeIII	GTNAC	2 cut(s)	694, 976
MalI	GATC	4 cut(s)	579, 665, 881, 947
MbiI	CCGCTC	1 cut(s)	773
MboI	GATC	4 cut(s)	577, 663, 879, 945
MboII	GAAGA	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	814
MluCI	AATT	4 cut(s)	274, 542, 959, 1004
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	990
MnlI	CCTC	6 cut(s)	40, 172, 175, 761, 931, 976
Mph1103I	ATGCAT	1 cut(s)	800
MroNI	GCCGGC	1 cut(s)	470
MseI	TTAA	3 cut(s)	57, 690, 1021
MspA1I	CMGCKG	1 cut(s)	705
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	860
MvaI	CCWGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	3 cut(s)	266, 388, 659
NaeI	GCCGGC	1 cut(s)	472
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	4 cut(s)	577, 663, 879, 945
NgoMIV	GCCGGC	1 cut(s)	470
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	7 cut(s)	260, 482, 638, 713, 798, 809, 977
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	2 cut(s)	260, 977
PaeI	GCATGC	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	497
PdiI	GCCGGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	92, 104, 248
PkrI	GCNGC	4 cut(s)	42, 201, 217, 704
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	858
PspPI	GGNCC	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	961, 993
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	3 cut(s)	57, 690, 1021
SatI	GCNGC	4 cut(s)	41, 200, 216, 703
Sau3AI	GATC	4 cut(s)	577, 663, 879, 945
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	3 cut(s)	136, 439, 768
SfcI	CTRYAG	1 cut(s)	733
SinI	GGWCC	1 cut(s)	167
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	4 cut(s)	274, 542, 959, 1004
SsiI	CCGC	8 cut(s)	40, 82, 199, 215, 632, 705, 773, 828
SspI	AATATT	2 cut(s)	55, 195
SspMI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 909
StyD4I	CCNGG	1 cut(s)	858
TaaI	ACNGT	3 cut(s)	243, 816, 919
TasI	AATT	4 cut(s)	274, 542, 959, 1004
TauI	GCSGC	3 cut(s)	43, 202, 218
TfiI	GAWTC	3 cut(s)	92, 104, 248
Tru1I	TTAA	3 cut(s)	57, 690, 1021
Tru9I	TTAA	3 cut(s)	57, 690, 1021
TscAI	CASTG	2 cut(s)	660, 819
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	702
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	174, 429, 555, 844
TspRI	CASTG	2 cut(s)	660, 819
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	274
XbaI	TCTAGA	3 cut(s)	28, 430, 535
XceI	RCATGY	2 cut(s)	260, 977
XspI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 909
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.