Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012649

Physical Location & Seq

Genomic Coordinates Forward (+)

16638782 .. 16642070

Gene Structure 3289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCATAAGTTGCATGAGAATAATCTAGAAATCAAGCGCCATGAAGATAATATTAAGTTTCTGCGGACTGAGATAAACCGCTTGAGTCATTCTATCCTTAATTTGCAAGTAAGTCTTGCAAAGCATCATTCAGGGAATGGGAATGGAACAACAGATGAAAATGGTGCTACTCGTGTGGAGGAGGAAGAAGAAACAGAACAGATTATGCGGCATGAAAAATCTGCAGCTGCCTTATTGTGCAAGCTGAAACCAATGAAATCTCATCATGCGACTCAGGCTTTGAATTTGGCTCTGACTAAGGATATGCTGGGTATCATTGGTGTTGTTGCCTCTCTTGGAAGAGTTGATGATGACGACCTTAGCAGGATTCTCTCAGAGTACTTGGGACTGGAAACTATGCTAGCAATTGTATGCAGGACATATGAAGGTGTTAAGGTTCTAGAGAAGTATGATGGGGATGGCATGATAATCAGCAGTGCTGGTATTCATGGACTTGGTTCTTCTATTGGGAACAGTATAAAAGGGCGCTTTCAAGTTATATGTCTCGAAGATTTGAGGCCGTATGTTGGTGGGTTTGTAGCTGATAACCCACAAAGGAAGCTTGCTCTTCCTAAACCCCAATTACCGAATGGGGAGTGTCCTCATGGCTTTCTTGATTATGCAGTGAACATGATCAATTTGGATAAAAGAAACTTACTTTCTCTCACTACTGGTGGGCATGGACTCAGAGAGACACTATTCTATAGCCTCTTTTCTCGCCTGCAAGTTTACAAGACCAGGCGGGAGATGCTTCTTGCTCTTCCATGCATAAATGATGGAGCTGTGTCTTTGGATGGTGGGATGATTAAAGAAAGTGGCGTGTTCGCCCTAGGAAGCAGGAAAAATATAGATGTTAAATTTCTAGCAACCACTGGAGAGTCTAGTATGCCTGCAAACTACATTGAAACTGAGGATATGCTCAAGAAGCTTAAATTGGAGCGAACTCATGTTACCGAGGATATGCAAAGGGAACAAGAATTGTTGGACCTTGCCACCCTTAAGCACGATTCTGCGACTTTGTCTTCTAAGCAGATGCATGCAGCCAAGATGGAGAAATCAGAAGAATGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.2

Weight (kDa)

6.22

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g16780 FvH4_7g16780 FvH4_7g16780 FvH4_7g16780 FvH4_7g16780
malus_domestica	MD01G1082600.v1.1 MD07G1150900.v1.1
prunus_persica	Prupe.2G190000_v2.0.a1
pyrus_communis	pycom07g14920
rosa_chinensis	RchiOBHm_Chr1g0359991
rosa_laevigata	RLG00000027842
rosa_multiflora	Rmu_ssc0000368.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296590
rosa_rugosa	Rorug01G0274100 Rorug01G0274200
rosa_samantha	Rh1AG288200 Rh1BG253600 Rh1CG271100 Rh1DG282600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	64, 79, 208, 781
AcsI	RAATTY	2 cut(s)	283, 896
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflII	CTTAAG	1 cut(s)	1037
AgsI	TTSAA	3 cut(s)	283, 533, 944
AjnI	CCWGG	1 cut(s)	776
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AluBI	AGCT	6 cut(s)	227, 244, 581, 601, 821, 967
AluI	AGCT	6 cut(s)	227, 244, 581, 601, 821, 967
Alw26I	GTCTC	2 cut(s)	548, 725
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	3 cut(s)	224, 227, 1079
ApoI	RAATTY	2 cut(s)	283, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspA2I	CCTAGG	1 cut(s)	868
AspLEI	GCGC	2 cut(s)	39, 528
AspS9I	GGNCC	1 cut(s)	1024
AsuNHI	GCTAGC	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	1024
AvrII	CCTAGG	1 cut(s)	868
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	1053
BbvI	GCAGC	3 cut(s)	214, 236, 1091
BccI	CCATC	5 cut(s)	446, 452, 809, 827, 1081
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	778
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	548, 725
BfaI	CTAG	6 cut(s)	26, 401, 440, 869, 902, 921
BfmI	CTRYAG	2 cut(s)	222, 742
BfoI	RGCGCY	2 cut(s)	40, 529
BfrI	CTTAAG	1 cut(s)	1037
BisI	GCNGC	4 cut(s)	209, 225, 228, 1080
BlnI	CCTAGG	1 cut(s)	868
BlsI	GCNGC	4 cut(s)	210, 226, 229, 1081
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	778
Bme18I	GGWCC	1 cut(s)	1024
BmgT120I	GGNCC	1 cut(s)	1024
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	133, 777, 1062
BmtI	GCTAGC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	1053
BpmI	CTGGAG	1 cut(s)	933
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	103, 944
BsaJI	CCNNGG	2 cut(s)	868, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	3 cut(s)	393, 715, 916
BseBI	CCWGG	1 cut(s)	778
BseDI	CCNNGG	2 cut(s)	868, 993
BseGI	GGATG	3 cut(s)	463, 838, 846
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	5 cut(s)	60, 287, 387, 739, 939
BseNI	ACTGG	3 cut(s)	393, 715, 916
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	214, 236, 1091
BseYI	CCCAGC	1 cut(s)	307
BshFI	GGCC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	548, 725
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	559
Bsp143I	GATC	1 cut(s)	672
BspACI	CCGC	4 cut(s)	64, 79, 208, 781
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	5 cut(s)	61, 286, 386, 738, 940
BspMAI	CTGCAG	1 cut(s)	226
BspOI	GCTAGC	1 cut(s)	404
BspQI	GCTCTTC	2 cut(s)	612, 804
BspTI	CTTAAG	1 cut(s)	1037
BsrI	ACTGG	3 cut(s)	393, 715, 916
BssECI	CCNNGG	2 cut(s)	868, 993
BssMI	GATC	1 cut(s)	672
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	868
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	778
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	3 cut(s)	334, 612, 804
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	6 cut(s)	242, 402, 603, 761, 930, 1077
BstDEI	CTNAG	8 cut(s)	69, 273, 297, 359, 373, 725, 948, 1065
BstF5I	GGATG	3 cut(s)	463, 838, 846
BstH2I	RGCGCY	2 cut(s)	40, 529
BstHHI	GCGC	2 cut(s)	39, 528
BstKTI	GATC	1 cut(s)	675
BstMAI	GTCTC	2 cut(s)	548, 725
BstMBI	GATC	1 cut(s)	672
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 275, 787, 964
BstNI	CCWGG	1 cut(s)	778
BstNSI	RCATGY	1 cut(s)	1079
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	2 cut(s)	222, 742
BstV1I	GCAGC	3 cut(s)	214, 236, 1091
BstV2I	GAAGAC	1 cut(s)	1053
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	463, 838, 846
BtsI	GCAGTG	2 cut(s)	481, 669
BtsIMutI	CAGTG	3 cut(s)	481, 669, 909
Cac8I	GCNNGC	6 cut(s)	242, 402, 603, 761, 930, 1077
CfoI	GCGC	2 cut(s)	39, 528
Cfr13I	GGNCC	1 cut(s)	1024
Csp6I	GTAC	1 cut(s)	379
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	8 cut(s)	69, 273, 297, 359, 373, 725, 948, 1065
DpnI	GATC	1 cut(s)	674
DpnII	GATC	1 cut(s)	672
Eam1104I	CTCTTC	3 cut(s)	334, 612, 804
EarI	CTCTTC	3 cut(s)	334, 612, 804
Eco130I	CCWWGG	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	1024
EcoRII	CCWGG	1 cut(s)	776
EcoT14I	CCWWGG	1 cut(s)	868
EcoT22I	ATGCAT	3 cut(s)	6, 809, 1077
ErhI	CCWWGG	1 cut(s)	868
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	399
FauI	CCCGC	1 cut(s)	774
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	209, 225, 228, 1080
FokI	GGATG	3 cut(s)	470, 845, 853
Fsp4HI	GCNGC	4 cut(s)	209, 225, 228, 1080
FspBI	CTAG	6 cut(s)	26, 401, 440, 869, 902, 921
GlaI	GCGC	2 cut(s)	38, 527
GluI	GCNGC	4 cut(s)	209, 225, 228, 1080
GsaI	CCCAGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	933
HaeII	RGCGCY	2 cut(s)	40, 529
HaeIII	GGCC	1 cut(s)	559
HhaI	GCGC	2 cut(s)	39, 528
Hin6I	GCGC	2 cut(s)	37, 526
HinP1I	GCGC	2 cut(s)	37, 526
HindIII	AAGCTT	2 cut(s)	599, 965
HinfI	GANTC	6 cut(s)	85, 271, 367, 723, 917, 1046
Hpy166II	GTNNAC	2 cut(s)	667, 769
Hpy188I	TCNGA	4 cut(s)	294, 376, 728, 1099
Hpy188III	TCNNGA	5 cut(s)	26, 440, 545, 653, 961
Hpy8I	GTNNAC	2 cut(s)	667, 769
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 275, 787, 964
HpyF3I	CTNAG	8 cut(s)	69, 273, 297, 359, 373, 725, 948, 1065
HspAI	GCGC	2 cut(s)	37, 526
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	1 cut(s)	672
LguI	GCTCTTC	2 cut(s)	612, 804
LmnI	GCTCC	2 cut(s)	818, 976
Lsp1109I	GCAGC	3 cut(s)	214, 236, 1091
LweI	GCATC	3 cut(s)	133, 777, 1062
MaeI	CTAG	6 cut(s)	26, 401, 440, 869, 902, 921
MaeIII	GTNAC	1 cut(s)	988
MalI	GATC	1 cut(s)	674
MboI	GATC	1 cut(s)	672
MfeI	CAATTG	1 cut(s)	405
MluCI	AATT	8 cut(s)	100, 283, 405, 620, 676, 896, 971, 1016
MlyI	GAGTC	4 cut(s)	94, 265, 717, 926
MmeI	TCCRAC	1 cut(s)	1002
MnlI	CCTC	8 cut(s)	172, 175, 340, 549, 651, 758, 943, 988
Mph1103I	ATGCAT	3 cut(s)	6, 809, 1077
MseI	TTAA	7 cut(s)	54, 99, 432, 846, 894, 969, 1038
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	1037
MspR9I	CCNGG	1 cut(s)	778
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	778
MwoI	GCNNNNNNNGC	4 cut(s)	10, 275, 787, 964
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	672
NheI	GCTAGC	1 cut(s)	400
NsiI	ATGCAT	3 cut(s)	6, 809, 1077
NspI	RCATGY	1 cut(s)	1079
PaeI	GCATGC	1 cut(s)	1079
PciSI	GCTCTTC	2 cut(s)	612, 804
PfeI	GAWTC	2 cut(s)	367, 1046
PflFI	GACNNNGTC	1 cut(s)	1057
PkrI	GCNGC	4 cut(s)	210, 226, 229, 1081
PleI	GAGTC	4 cut(s)	93, 265, 717, 925
PpsI	GAGTC	4 cut(s)	93, 265, 717, 925
Psp6I	CCWGG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	1024
PsrI	GAACNNNNNNTAC	2 cut(s)	973, 1005
PstI	CTGCAG	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SapI	GCTCTTC	2 cut(s)	612, 804
SaqAI	TTAA	7 cut(s)	54, 99, 432, 846, 894, 969, 1038
SatI	GCNGC	4 cut(s)	209, 225, 228, 1080
Sau3AI	GATC	1 cut(s)	672
Sau96I	GGNCC	1 cut(s)	1024
ScaI	AGTACT	1 cut(s)	380
SchI	GAGTC	4 cut(s)	94, 265, 717, 926
ScrFI	CCNGG	1 cut(s)	778
SfaNI	GCATC	3 cut(s)	133, 777, 1062
SfcI	CTRYAG	2 cut(s)	222, 742
SinI	GGWCC	1 cut(s)	1024
SmlI	CTYRAG	3 cut(s)	82, 959, 1037
SmoI	CTYRAG	3 cut(s)	82, 959, 1037
SphI	GCATGC	1 cut(s)	1079
Sse9I	AATT	8 cut(s)	100, 283, 405, 620, 676, 896, 971, 1016
SsiI	CCGC	4 cut(s)	64, 79, 208, 781
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	6 cut(s)	26, 401, 440, 869, 902, 921
StyD4I	CCNGG	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	1 cut(s)	546
TasI	AATT	8 cut(s)	100, 283, 405, 620, 676, 896, 971, 1016
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	367, 1046
Tru1I	TTAA	7 cut(s)	54, 99, 432, 846, 894, 969, 1038
Tru9I	TTAA	7 cut(s)	54, 99, 432, 846, 894, 969, 1038
TscAI	CASTG	3 cut(s)	481, 669, 916
TseI	GCWGC	3 cut(s)	224, 227, 1079
TspDTI	ATGAA	6 cut(s)	57, 171, 228, 269, 438, 476
TspRI	CASTG	3 cut(s)	481, 669, 916
Tth111I	GACNNNGTC	1 cut(s)	1057
Vha464I	CTTAAG	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	1024
XapI	RAATTY	2 cut(s)	283, 896
XbaI	TCTAGA	2 cut(s)	25, 439
XceI	RCATGY	1 cut(s)	1079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XmaJI	CCTAGG	1 cut(s)	868
XspI	CTAG	6 cut(s)	26, 401, 440, 869, 902, 921
ZrmI	AGTACT	1 cut(s)	380
Zsp2I	ATGCAT	3 cut(s)	6, 809, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.