Rh1DG282600

DNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012649
Physical Location & Seq
Reverse (-)
50443667 .. 50446853
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG282600.1

Sequence Viewer

Length: 855 bp
ATGCGGCATGAAAAATCTGCAGCTGCCTTATTGTGCAAGCTGAAACCAATGAAATCTCATCATGCGACTCAGGCTTTGAATTTGGCTCTGACTAAGGATATGCTGGGTATCATTGGTGTTGTTGCCTCTCTTGGAAGAGTTGATGATGACGACCTTAGCAGGATTCTCTCGGAGTACTTGGGACCGGAAACTATGCTAGCAATTGTATGCAGGACATATGAAGGTGTTAAGGTTCTAGAGAAGTATGATGGGGATGGCATGATAATCAGCAGTGCTGGTATTCATGGACTAGGTTCTTCTATTGGGAACAGTATAAAAGGGCGCTTTCAAGTTATATGTCTTGAAGATTTGAGGCCATATGTTGGTGGGTTTGTAGCTGATAACCCACAAAGGAAGCTTGCTCTTCCTAAACCCCAATTACCGAATGGGGAGTGTCCTCATGGCTTTCTTGATTATGCAGCGAACATGATCAATTTGGATAAAAGAAACTTACTTTCTCTCACTACTGGTGGGCATGGACTCAGAGAGACACTATTCTATAGCCTCTTTTCTCGCCTACAAGTTTACAAGACCAGGCGGGAGATGCTTCTTGCTCTTCCATGCATAAATGATGGAGCTGTGTCTTTGGATGGTGGGATGATTAAAGAAAGTGGCGTGTTCGCCCTAGGAAGCAGGAAAAATATAGATGTTAAATTTCTAGCAACCACTGGAGAGTCTAGTATGCCTGCAAACTACATTGAAACTGAGGATATGCTCAAGAAGCTTAAATTGGAGCGAACTCATGTTACTGAGGATATGCAAAGGGAACAAGAATTGTTGGACCTTGCCAAGATAAACTTAAGCACGATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.24

Weight (kDa)

7.05

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AciI CCGC 2 cut(s) 4, 577
AcsI RAATTY 2 cut(s) 79, 692
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 362
AflII CTTAAG 1 cut(s) 838
AgsI TTSAA 4 cut(s) 79, 329, 344, 740
AjnI CCWGG 1 cut(s) 572
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 6 cut(s) 23, 40, 377, 397, 617, 763
AluI AGCT 6 cut(s) 23, 40, 377, 397, 617, 763
Alw26I GTCTC 1 cut(s) 521
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 3 cut(s) 20, 23, 458
ApoI RAATTY 2 cut(s) 79, 692
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspA2I CCTAGG 1 cut(s) 664
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 182, 820
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 2 cut(s) 182, 820
AvrII CCTAGG 1 cut(s) 664
BbvI GCAGC 3 cut(s) 10, 32, 470
BccI CCATC 4 cut(s) 242, 248, 605, 623
BciT130I CCWGG 1 cut(s) 574
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 6 cut(s) 197, 236, 290, 665, 698, 717
BfmI CTRYAG 2 cut(s) 18, 538
BfoI RGCGCY 1 cut(s) 325
BfrI CTTAAG 1 cut(s) 838
BisI GCNGC 4 cut(s) 5, 21, 24, 459
BlnI CCTAGG 1 cut(s) 664
BlsI GCNGC 4 cut(s) 6, 22, 25, 460
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 2 cut(s) 182, 820
BmgT120I GGNCC 2 cut(s) 182, 820
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 573
BmtI GCTAGC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 740
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 511, 712
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 3 cut(s) 259, 634, 642
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 4 cut(s) 83, 535, 735, 780
BseNI ACTGG 2 cut(s) 511, 712
BseXI GCAGC 3 cut(s) 10, 32, 470
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 355
Bsp143I GATC 1 cut(s) 468
BspACI CCGC 2 cut(s) 4, 577
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 4 cut(s) 82, 534, 736, 781
BspLI GGNNCC 1 cut(s) 183
BspMAI CTGCAG 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 200
BspQI GCTCTTC 2 cut(s) 408, 600
BspTI CTTAAG 1 cut(s) 838
BsrI ACTGG 2 cut(s) 511, 712
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 1 cut(s) 468
BssT1I CCWWGG 1 cut(s) 664
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 3 cut(s) 130, 408, 600
BstAFI CTTAAG 1 cut(s) 838
BstC8I GCNNGC 4 cut(s) 38, 198, 399, 726
BstDEI CTNAG 6 cut(s) 69, 93, 155, 521, 744, 789
BstF5I GGATG 3 cut(s) 259, 634, 642
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 471
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 3 cut(s) 71, 583, 760
BstNI CCWGG 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 572
BstSFI CTRYAG 2 cut(s) 18, 538
BstV1I GCAGC 3 cut(s) 10, 32, 470
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 3 cut(s) 259, 634, 642
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 277, 705
Cac8I GCNNGC 4 cut(s) 38, 198, 399, 726
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 182, 820
Csp6I GTAC 1 cut(s) 175
CviAII CATG 9 cut(s) 8, 62, 259, 284, 440, 466, 515, 600, 782
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 6 cut(s) 69, 93, 155, 521, 744, 789
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eam1104I CTCTTC 3 cut(s) 130, 408, 600
EarI CTCTTC 3 cut(s) 130, 408, 600
Eco130I CCWWGG 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 182, 820
EcoRII CCWGG 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 664
EcoT22I ATGCAT 1 cut(s) 605
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 9 cut(s) 11, 65, 262, 287, 443, 469, 518, 603, 785
FalI AAGNNNNNCTT 2 cut(s) 821, 853
FaqI GGGAC 1 cut(s) 195
FatI CATG 9 cut(s) 7, 61, 258, 283, 439, 465, 514, 599, 781
FauI CCCGC 1 cut(s) 570
FauNDI CATATG 2 cut(s) 217, 358
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 4 cut(s) 5, 21, 24, 459
FokI GGATG 3 cut(s) 266, 641, 649
Fsp4HI GCNGC 4 cut(s) 5, 21, 24, 459
FspBI CTAG 6 cut(s) 197, 236, 290, 665, 698, 717
GlaI GCGC 1 cut(s) 323
GluI GCNGC 4 cut(s) 5, 21, 24, 459
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 729
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 1 cut(s) 355
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 324
Hin1II CATG 9 cut(s) 11, 65, 262, 287, 443, 469, 518, 603, 785
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HindIII AAGCTT 2 cut(s) 395, 761
HinfI GANTC 5 cut(s) 67, 163, 519, 713, 847
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 3 cut(s) 90, 172, 524
Hpy188III TCNNGA 4 cut(s) 236, 341, 449, 757
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 7 cut(s) 20, 36, 210, 458, 603, 728, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 583, 760
HpyF3I CTNAG 6 cut(s) 69, 93, 155, 521, 744, 789
Hsp92II CATG 9 cut(s) 11, 65, 262, 287, 443, 469, 518, 603, 785
HspAI GCGC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 1 cut(s) 468
LguI GCTCTTC 2 cut(s) 408, 600
LmnI GCTCC 2 cut(s) 614, 772
Lsp1109I GCAGC 3 cut(s) 10, 32, 470
LweI GCATC 1 cut(s) 573
MaeI CTAG 6 cut(s) 197, 236, 290, 665, 698, 717
MaeIII GTNAC 1 cut(s) 784
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 5 cut(s) 147, 288, 356, 395, 587
MfeI CAATTG 1 cut(s) 201
MluCI AATT 7 cut(s) 79, 201, 416, 472, 692, 767, 812
MlyI GAGTC 3 cut(s) 61, 513, 722
MmeI TCCRAC 1 cut(s) 798
MnlI CCTC 6 cut(s) 136, 345, 447, 554, 739, 784
Mph1103I ATGCAT 1 cut(s) 605
MseI TTAA 5 cut(s) 228, 642, 690, 765, 839
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 574
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 71, 583, 760
NdeI CATATG 2 cut(s) 217, 358
NdeII GATC 1 cut(s) 468
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 9 cut(s) 11, 65, 262, 287, 443, 469, 518, 603, 785
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 605
PciSI GCTCTTC 2 cut(s) 408, 600
PfeI GAWTC 2 cut(s) 163, 847
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 4 cut(s) 6, 22, 25, 460
PleI GAGTC 3 cut(s) 61, 513, 721
PpsI GAGTC 3 cut(s) 61, 513, 721
Psp6I CCWGG 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 182, 820
PsrI GAACNNNNNNTAC 2 cut(s) 769, 801
PstI CTGCAG 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SapI GCTCTTC 2 cut(s) 408, 600
SaqAI TTAA 5 cut(s) 228, 642, 690, 765, 839
SatI GCNGC 4 cut(s) 5, 21, 24, 459
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 2 cut(s) 182, 820
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 3 cut(s) 61, 513, 722
ScrFI CCNGG 1 cut(s) 574
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 2 cut(s) 18, 538
SinI GGWCC 2 cut(s) 182, 820
SmlI CTYRAG 2 cut(s) 755, 838
SmoI CTYRAG 2 cut(s) 755, 838
Sse9I AATT 7 cut(s) 79, 201, 416, 472, 692, 767, 812
SsiI CCGC 2 cut(s) 4, 577
SspMI CTAG 6 cut(s) 197, 236, 290, 665, 698, 717
StyD4I CCNGG 1 cut(s) 572
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 1 cut(s) 311
TasI AATT 7 cut(s) 79, 201, 416, 472, 692, 767, 812
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 163, 847
Tru1I TTAA 5 cut(s) 228, 642, 690, 765, 839
Tru9I TTAA 5 cut(s) 228, 642, 690, 765, 839
TscAI CASTG 2 cut(s) 277, 712
TseI GCWGC 3 cut(s) 20, 23, 458
TspDTI ATGAA 4 cut(s) 24, 65, 234, 272
TspRI CASTG 2 cut(s) 277, 712
Van91I CCANNNNNTGG 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 182, 820
XapI RAATTY 2 cut(s) 79, 692
XbaI TCTAGA 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmaJI CCTAGG 1 cut(s) 664
XspI CTAG 6 cut(s) 197, 236, 290, 665, 698, 717
ZrmI AGTACT 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.