Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012649

Physical Location & Seq

Genomic Coordinates Reverse (-)

16947989 .. 16950678

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAAAACCGAACCACCAGAATAATCTAGAAATCAAGCGGCACGAGGATAATATTAAGTTCCTTCAGAATGAGATAAACCGCTTGGGTGAATCTTTACTGGAATTGCAAGTGAGTCTTGCAAAGCATCAGTCAGCCAATGGTACTGTAACAACAAATGAAAATGGTCCTACTGCTGAGGAGGAAGACCAAATATTGCGGCATGAAAAATCCGCGGCTGGCTTATTGTGCAGGCTGAAACTGTTAAAATCACAGCATGCGAGTCAGGCTTTGAATTTGGCTCTGACAAAGGATGTGCTGGGTATTGTTGGCATTGTTGCCACACTTGGCAGAGTCGAGGATGACAACCTTAGCAGGCTTCTCTCGGAGTACTTGGGACTGGAAACTATGCTAGCAATTGTATGCAGGACAAGTGAAGCTGTTATGGTTCTAGAGAAGTATGATGGGGATGGGACAGTACTCACCAGCGCTGGCATACATGGTCTAGGAGCTTCTATTGGGAAGAGCATAAAAGGGCGGTTTCTGGTCATATGTCTAGATGATTTGAGTCCATATGTTGGGGGATTTGTAGCTGATGATCGACAAAGGAAGCTTGCTCTTCCCAAACCACAGCTACCAAATGGGGAGTGTCCGTGCGGCTTTCTTGATTATGCAGTGAACACGATCAATTTGGATGGCAATAACTTAGTTAATGTCACCAGCAGTGGGCATGGTCTCAGAGAGACACTATTCTATAGTCTCTTTTCTCGCCTCCAAATATACAGAACCAGAGCAGAGATGCTTCTCGCTCTCCCATGCATAAATCATGGAGCACTGTCTTTAGATGGCGGGATTATTAAAAAGAGTGGTGTGTTCATCCTGGGAAGCAGCAAAGATACAGAGATCAAATTTCTTGCAAAATCTGGAGAATCTAGTATGACTGCGAAGTATGAAGAAACTGAGGATATGATCAAGAAGCTGAAATTAAAGCGAACGCATGTTGCTGAGGATATGCAAAGAGAACAAGAATTGTTGGACTTCGCTAAGGCAAACTTGGCACAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

38.16

Weight (kDa)

6.17

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g16780 FvH4_7g16780 FvH4_7g16780 FvH4_7g16780 FvH4_7g16780
malus_domestica	MD01G1082600.v1.1 MD07G1150900.v1.1
prunus_persica	Prupe.2G190000_v2.0.a1
pyrus_communis	pycom07g14920
rosa_chinensis	RchiOBHm_Chr1g0359991
rosa_laevigata	RLG00000027842
rosa_multiflora	Rmu_ssc0000368.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296590
rosa_rugosa	Rorug01G0274100 Rorug01G0274200
rosa_samantha	Rh1AG288200 Rh1BG253600 Rh1CG271100 Rh1DG282600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccII	CGCG	1 cut(s)	215
AciI	CCGC	8 cut(s)	40, 82, 199, 213, 215, 517, 636, 828
AcsI	RAATTY	2 cut(s)	274, 887
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	145, 371, 459
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	557, 705
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	858
AleI	CACNNNNGTG	1 cut(s)	1042
AluBI	AGCT	6 cut(s)	419, 491, 572, 592, 613, 958
AluI	AGCT	6 cut(s)	419, 491, 572, 592, 613, 958
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	3 cut(s)	716, 719, 743
Aor51HI	AGCGCT	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	867
ApoI	RAATTY	2 cut(s)	274, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	101, 454, 688
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	814
BbvCI	CCTCAGC	2 cut(s)	177, 984
BbvI	GCAGC	1 cut(s)	879
BccI	CCATC	4 cut(s)	437, 443, 668, 818
BciT130I	CCWGG	1 cut(s)	860
BclI	TGATCA	1 cut(s)	948
BcoDI	GTCTC	3 cut(s)	716, 719, 743
BfaI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 912
BfmI	CTRYAG	1 cut(s)	733
BfoI	RGCGCY	1 cut(s)	471
BisI	GCNGC	5 cut(s)	41, 200, 216, 637, 868
BlsI	GCNGC	5 cut(s)	42, 201, 217, 638, 869
BmcAI	AGTACT	2 cut(s)	371, 459
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	860
BmsI	GCATC	2 cut(s)	136, 768
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	924
Bpu10I	CCTNAGC	4 cut(s)	177, 350, 984, 1023
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	213, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 705
Bse1I	ACTGG	2 cut(s)	105, 384
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	2 cut(s)	213, 859
BseGI	GGATG	5 cut(s)	298, 346, 454, 679, 855
BseLI	CCNNNNNNNGG	2 cut(s)	557, 705
BseMII	CTCAG	4 cut(s)	168, 730, 930, 975
BseNI	ACTGG	2 cut(s)	105, 384
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	879
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	814
BslFI	GGGAC	2 cut(s)	390, 466
BslI	CCNNNNNNNGG	2 cut(s)	557, 705
BsmAI	GTCTC	3 cut(s)	716, 719, 743
BsmFI	GGGAC	2 cut(s)	390, 466
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp143I	GATC	4 cut(s)	577, 663, 882, 948
BspACI	CCGC	8 cut(s)	40, 82, 199, 213, 215, 517, 636, 828
BspCNI	CTCAG	4 cut(s)	169, 729, 931, 976
BspFNI	CGCG	1 cut(s)	215
BspOI	GCTAGC	1 cut(s)	395
BspQI	GCTCTTC	2 cut(s)	497, 603
BspTNI	GGTCTC	1 cut(s)	719
BsrI	ACTGG	2 cut(s)	105, 384
BssECI	CCNNGG	2 cut(s)	213, 859
BssMI	GATC	4 cut(s)	577, 663, 882, 948
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	148, 243, 457, 816
Bst6I	CTCTTC	2 cut(s)	497, 603
BstC8I	GCNNGC	7 cut(s)	220, 233, 258, 356, 393, 472, 594
BstDEI	CTNAG	7 cut(s)	177, 350, 685, 716, 939, 984, 1023
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	5 cut(s)	298, 346, 454, 679, 855
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	4 cut(s)	580, 666, 885, 951
BstMAI	GTCTC	3 cut(s)	716, 719, 743
BstMBI	GATC	4 cut(s)	577, 663, 882, 948
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 266, 1034
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	2 cut(s)	260, 980
BstSCI	CCNGG	1 cut(s)	858
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	879
BstV2I	GAAGAC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	5 cut(s)	298, 346, 454, 679, 855
BtsI	GCAGTG	2 cut(s)	660, 709
BtsIMutI	CAGTG	3 cut(s)	660, 709, 812
Cac8I	GCNNGC	7 cut(s)	220, 233, 258, 356, 393, 472, 594
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	167
Cfr42I	CCGCGG	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	144, 370, 458
CviAII	CATG	7 cut(s)	203, 257, 479, 710, 795, 806, 977
CviQI	GTAC	3 cut(s)	144, 370, 458
DdeI	CTNAG	7 cut(s)	177, 350, 685, 716, 939, 984, 1023
DpnI	GATC	4 cut(s)	579, 665, 884, 950
DpnII	GATC	4 cut(s)	577, 663, 882, 948
Eam1104I	CTCTTC	2 cut(s)	497, 603
EarI	CTCTTC	2 cut(s)	497, 603
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	858
EcoT22I	ATGCAT	1 cut(s)	800
FaeI	CATG	7 cut(s)	206, 260, 482, 713, 798, 809, 980
FalI	AAGNNNNNCTT	3 cut(s)	102, 134, 1016
FaqI	GGGAC	2 cut(s)	390, 466
FatI	CATG	7 cut(s)	202, 256, 478, 709, 794, 805, 976
FauI	CCCGC	1 cut(s)	821
FauNDI	CATATG	2 cut(s)	530, 553
FbaI	TGATCA	1 cut(s)	948
Fnu4HI	GCNGC	5 cut(s)	41, 200, 216, 637, 868
FokI	GGATG	5 cut(s)	305, 353, 461, 686, 842
Fsp4HI	GCNGC	5 cut(s)	41, 200, 216, 637, 868
FspBI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 912
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	5 cut(s)	41, 200, 216, 637, 868
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	924
HaeII	RGCGCY	1 cut(s)	471
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	7 cut(s)	206, 260, 482, 713, 798, 809, 980
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	6 cut(s)	92, 115, 262, 333, 547, 908
HphI	GGTGA	3 cut(s)	101, 454, 688
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	4 cut(s)	69, 285, 367, 719
Hpy188III	TCNNGA	6 cut(s)	29, 431, 536, 644, 903, 952
Hpy8I	GTNNAC	1 cut(s)	658
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	4 cut(s)	148, 243, 457, 816
HpyCH4V	TGCA	8 cut(s)	109, 122, 231, 405, 653, 798, 896, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 266, 1034
HpyF3I	CTNAG	7 cut(s)	177, 350, 685, 716, 939, 984, 1023
Hsp92II	CATG	7 cut(s)	206, 260, 482, 713, 798, 809, 980
HspAI	GCGC	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	948
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	577, 663, 882, 948
LguI	GCTCTTC	2 cut(s)	497, 603
LmnI	GCTCC	2 cut(s)	488, 809
Lsp1109I	GCAGC	1 cut(s)	879
LweI	GCATC	2 cut(s)	136, 768
MaeI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 912
MaeIII	GTNAC	2 cut(s)	148, 694
MalI	GATC	4 cut(s)	579, 665, 884, 950
MboI	GATC	4 cut(s)	577, 663, 882, 948
MboII	GAAGA	4 cut(s)	197, 514, 590, 944
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	814
MluCI	AATT	7 cut(s)	104, 274, 396, 667, 887, 962, 1007
MlyI	GAGTC	4 cut(s)	124, 271, 342, 556
MmeI	TCCRAC	1 cut(s)	993
MnlI	CCTC	7 cut(s)	40, 172, 175, 331, 761, 934, 979
Mph1103I	ATGCAT	1 cut(s)	800
MseI	TTAA	5 cut(s)	57, 245, 690, 837, 965
MslI	CAYNNNNRTG	1 cut(s)	1042
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	860
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	228, 266, 1034
NdeI	CATATG	2 cut(s)	530, 553
NdeII	GATC	4 cut(s)	577, 663, 882, 948
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	7 cut(s)	206, 260, 482, 713, 798, 809, 980
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	2 cut(s)	260, 980
OliI	CACNNNNGTG	1 cut(s)	1042
PaeI	GCATGC	1 cut(s)	260
PciSI	GCTCTTC	2 cut(s)	497, 603
PfeI	GAWTC	2 cut(s)	92, 908
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	42, 201, 217, 638, 869
PleI	GAGTC	4 cut(s)	123, 270, 341, 555
PpsI	GAGTC	4 cut(s)	123, 270, 341, 555
Psp6I	CCWGG	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	858
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	3 cut(s)	145, 371, 459
RsaNI	GTAC	3 cut(s)	144, 370, 458
RseI	CAYNNNNRTG	1 cut(s)	1042
SacII	CCGCGG	1 cut(s)	216
SapI	GCTCTTC	2 cut(s)	497, 603
SaqAI	TTAA	5 cut(s)	57, 245, 690, 837, 965
SatI	GCNGC	5 cut(s)	41, 200, 216, 637, 868
Sau3AI	GATC	4 cut(s)	577, 663, 882, 948
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	2 cut(s)	371, 459
SchI	GAGTC	4 cut(s)	124, 271, 342, 556
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	1 cut(s)	814
SetI	ASST	7 cut(s)	351, 421, 493, 574, 594, 615, 960
SfaNI	GCATC	2 cut(s)	136, 768
SfcI	CTRYAG	1 cut(s)	733
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	1042
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	7 cut(s)	104, 274, 396, 667, 887, 962, 1007
SsiI	CCGC	8 cut(s)	40, 82, 199, 213, 215, 517, 636, 828
SspI	AATATT	2 cut(s)	55, 195
SspMI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 912
StyD4I	CCNGG	1 cut(s)	858
TaaI	ACNGT	4 cut(s)	148, 243, 457, 816
TaqI	TCGA	2 cut(s)	336, 580
TasI	AATT	7 cut(s)	104, 274, 396, 667, 887, 962, 1007
TatI	WGTACW	2 cut(s)	369, 457
TauI	GCSGC	4 cut(s)	43, 202, 218, 639
TfiI	GAWTC	2 cut(s)	92, 908
Tru1I	TTAA	5 cut(s)	57, 245, 690, 837, 965
Tru9I	TTAA	5 cut(s)	57, 245, 690, 837, 965
TscAI	CASTG	3 cut(s)	660, 709, 819
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	867
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	174, 219, 844, 945
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	3 cut(s)	660, 709, 819
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	274, 887
XbaI	TCTAGA	3 cut(s)	28, 430, 535
XceI	RCATGY	2 cut(s)	260, 980
XspI	CTAG	6 cut(s)	29, 392, 431, 485, 536, 912
ZrmI	AGTACT	2 cut(s)	371, 459
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.