RchiOBHm_Chr1g0359991

DNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012649
Physical Location & Seq
Reverse (-)
51796423 .. 51799655
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58501

Sequence Viewer

Length: 1059 bp
ATGTCGAAACCAATCCACCAGAATAATCTAGAAATCAAGCGGCATGAAGATAATATTAAGTTTCTGCAGACTGAGATAAACTGCTTGAGTCATTCTATTCTTAATTTGCAAGTAAGTCTTGCAAAGCGTCATTCAGGGAATGGGAATGGAACAGCAGATGAAAATGGTGCTACTCGTGTGGAGGAGGAAGAAACAGAACAGATTATGCGGCATGAAAAATCTGCAGCTGCCTTATTGTGCAAGCTGAAACCAATGAAATCTCATCATGCGACTCAGGCTTTGAATTTGGCTCTGACTAAGGATATGCTGGGTATCATTGGTGTTGTTGCCTCTCTTGGAAGAGTTGATGATGACGACCTTAGCAGGATTCTCTCAGAGTACTTGGGACTGGAAACTATGCTAGCAATTGTATGCAGGACGTATGAAGGTGTTAAGGTTCTAGAGAAGTATGATGGGGATGGCATGATAATCAGCAGTGCTGGTATTCATGGACTAGGTTCTTCTATTGGGAACAGTATAAAAGGGCGCTTTCAAGTTATATGTCTCGAAGATTTGAGGCCATATGTTGGTGGGTTTGTAGCTGATAACCCACAACGGAAGCTTGCTCTTCCTAAACCTCAATTACCAAATGGGGAGTGTCCTCATGGCTTTCTTGATTATGCAGTGAACATGATCAATTTGGATAAAAGAAACCTACTTTCTCTCACTACTGGTGGGCATGGACTCAGAGAGACACTATTCTATAGCGTCTTTTCTCGCCTACAAGTTTACAAGACCAGGCGGGAGATGCTTCTTGCTCTTCCATGCATAAATGATGGAGCTGTGTCTTTGGATGGTGGGATGATTAAAGAAAGTGGCGTGTTCGCCCTAGGAAGCAGGAAAAATATAGATGTTAAATTTCTAGCAACCACTGGAGAGTCTAGTATGCCTGCAAACTACATTGAAACTGAGGATATGCTCAAGAAGCTTAAATTGGAGCGAACTCATGTTACTGAGGATATGCAAAGGGAACAAGAATTGTTGGACCTTGCCAAGATAAACTTAAGCACGATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.93

Weight (kDa)

6.28

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 566
AciI CCGC 3 cut(s) 40, 208, 781
AcsI RAATTY 2 cut(s) 283, 896
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 566
AflII CTTAAG 1 cut(s) 1042
AgsI TTSAA 3 cut(s) 283, 533, 944
AjnI CCWGG 1 cut(s) 776
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AluBI AGCT 6 cut(s) 227, 244, 581, 601, 821, 967
AluI AGCT 6 cut(s) 227, 244, 581, 601, 821, 967
Alw26I GTCTC 2 cut(s) 548, 725
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 224, 227
ApoI RAATTY 2 cut(s) 283, 896
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspA2I CCTAGG 1 cut(s) 868
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 1024
AsuNHI GCTAGC 1 cut(s) 400
AvaII GGWCC 1 cut(s) 1024
AvrII CCTAGG 1 cut(s) 868
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 2 cut(s) 214, 236
BccI CCATC 4 cut(s) 446, 452, 809, 827
BciT130I CCWGG 1 cut(s) 778
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 548, 725
BfaI CTAG 7 cut(s) 29, 401, 440, 494, 869, 902, 921
BfmI CTRYAG 3 cut(s) 65, 222, 742
BfoI RGCGCY 1 cut(s) 529
BfrI CTTAAG 1 cut(s) 1042
BisI GCNGC 4 cut(s) 41, 209, 225, 228
BlnI CCTAGG 1 cut(s) 868
BlsI GCNGC 4 cut(s) 42, 210, 226, 229
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 778
Bme18I GGWCC 1 cut(s) 1024
BmgT120I GGNCC 1 cut(s) 1024
BmrFI CCNGG 1 cut(s) 778
BmsI GCATC 1 cut(s) 777
BmtI GCTAGC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 2 cut(s) 106, 944
BsaJI CCNNGG 1 cut(s) 868
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 3 cut(s) 393, 715, 916
BseBI CCWGG 1 cut(s) 778
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 3 cut(s) 463, 838, 846
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 6 cut(s) 63, 287, 387, 739, 939, 984
BseNI ACTGG 3 cut(s) 393, 715, 916
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 214, 236
BseYI CCCAGC 1 cut(s) 307
BshFI GGCC 1 cut(s) 559
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 548, 725
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 1 cut(s) 559
Bsp143I GATC 1 cut(s) 672
BspACI CCGC 3 cut(s) 40, 208, 781
BspANI GGCC 1 cut(s) 559
BspCNI CTCAG 6 cut(s) 64, 286, 386, 738, 940, 985
BspMAI CTGCAG 2 cut(s) 69, 226
BspOI GCTAGC 1 cut(s) 404
BspQI GCTCTTC 2 cut(s) 612, 804
BspTI CTTAAG 1 cut(s) 1042
BsrI ACTGG 3 cut(s) 393, 715, 916
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 1 cut(s) 672
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 868
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 778
Bst4CI ACNGT 1 cut(s) 515
Bst6I CTCTTC 3 cut(s) 334, 612, 804
BstAFI CTTAAG 1 cut(s) 1042
BstC8I GCNNGC 4 cut(s) 242, 402, 603, 930
BstDEI CTNAG 8 cut(s) 72, 273, 297, 359, 373, 725, 948, 993
BstF5I GGATG 3 cut(s) 463, 838, 846
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 1 cut(s) 675
BstMAI GTCTC 2 cut(s) 548, 725
BstMBI GATC 1 cut(s) 672
BstMWI GCNNNNNNNGC 3 cut(s) 275, 787, 964
BstNI CCWGG 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 776
BstSFI CTRYAG 3 cut(s) 65, 222, 742
BstV1I GCAGC 2 cut(s) 214, 236
BsuRI GGCC 1 cut(s) 559
BtsCI GGATG 3 cut(s) 463, 838, 846
BtsI GCAGTG 2 cut(s) 481, 669
BtsIMutI CAGTG 3 cut(s) 481, 669, 909
Cac8I GCNNGC 4 cut(s) 242, 402, 603, 930
CfoI GCGC 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 1024
CseI GACGC 2 cut(s) 116, 736
Csp6I GTAC 1 cut(s) 379
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 8 cut(s) 72, 273, 297, 359, 373, 725, 948, 993
DpnI GATC 1 cut(s) 674
DpnII GATC 1 cut(s) 672
Eam1104I CTCTTC 3 cut(s) 334, 612, 804
EarI CTCTTC 3 cut(s) 334, 612, 804
Eco130I CCWWGG 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 868
EcoT22I ATGCAT 1 cut(s) 809
ErhI CCWWGG 1 cut(s) 868
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 1025, 1057
FaqI GGGAC 1 cut(s) 399
FauI CCCGC 1 cut(s) 774
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 41, 209, 225, 228
FokI GGATG 3 cut(s) 470, 845, 853
Fsp4HI GCNGC 4 cut(s) 41, 209, 225, 228
FspBI CTAG 7 cut(s) 29, 401, 440, 494, 869, 902, 921
GlaI GCGC 1 cut(s) 527
GluI GCNGC 4 cut(s) 41, 209, 225, 228
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 1 cut(s) 559
HgaI GACGC 2 cut(s) 116, 736
HhaI GCGC 1 cut(s) 528
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HindIII AAGCTT 2 cut(s) 599, 965
HinfI GANTC 6 cut(s) 88, 271, 367, 723, 917, 1051
Hpy166II GTNNAC 2 cut(s) 667, 769
Hpy188I TCNGA 3 cut(s) 294, 376, 728
Hpy188III TCNNGA 5 cut(s) 29, 440, 545, 653, 961
Hpy8I GTNNAC 2 cut(s) 667, 769
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4IV ACGT 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 787, 964
HpyF3I CTNAG 8 cut(s) 72, 273, 297, 359, 373, 725, 948, 993
HpySE526I ACGT 1 cut(s) 419
HspAI GCGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 1 cut(s) 672
LguI GCTCTTC 2 cut(s) 612, 804
LmnI GCTCC 2 cut(s) 818, 976
Lsp1109I GCAGC 2 cut(s) 214, 236
LweI GCATC 1 cut(s) 777
MaeI CTAG 7 cut(s) 29, 401, 440, 494, 869, 902, 921
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 988
MalI GATC 1 cut(s) 674
MboI GATC 1 cut(s) 672
MboII GAAGA 7 cut(s) 59, 200, 351, 492, 560, 599, 791
MfeI CAATTG 1 cut(s) 405
MluCI AATT 8 cut(s) 103, 283, 405, 620, 676, 896, 971, 1016
MlyI GAGTC 4 cut(s) 97, 265, 717, 926
MmeI TCCRAC 1 cut(s) 1002
MnlI CCTC 8 cut(s) 175, 178, 340, 549, 627, 651, 943, 988
Mph1103I ATGCAT 1 cut(s) 809
MseI TTAA 7 cut(s) 57, 102, 432, 846, 894, 969, 1043
MspA1I CMGCKG 1 cut(s) 227
MspCI CTTAAG 1 cut(s) 1042
MspR9I CCNGG 1 cut(s) 778
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 778
MwoI GCNNNNNNNGC 3 cut(s) 275, 787, 964
NdeI CATATG 1 cut(s) 562
NdeII GATC 1 cut(s) 672
NheI GCTAGC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 809
PciSI GCTCTTC 2 cut(s) 612, 804
PfeI GAWTC 2 cut(s) 367, 1051
PflMI CCANNNNNTGG 1 cut(s) 566
PkrI GCNGC 4 cut(s) 42, 210, 226, 229
PleI GAGTC 4 cut(s) 96, 265, 717, 925
PpsI GAGTC 4 cut(s) 96, 265, 717, 925
Psp6I CCWGG 1 cut(s) 776
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 1 cut(s) 776
PspPI GGNCC 1 cut(s) 1024
PsrI GAACNNNNNNTAC 2 cut(s) 973, 1005
PstI CTGCAG 2 cut(s) 69, 226
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SapI GCTCTTC 2 cut(s) 612, 804
SaqAI TTAA 7 cut(s) 57, 102, 432, 846, 894, 969, 1043
SatI GCNGC 4 cut(s) 41, 209, 225, 228
Sau3AI GATC 1 cut(s) 672
Sau96I GGNCC 1 cut(s) 1024
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 4 cut(s) 97, 265, 717, 926
ScrFI CCNGG 1 cut(s) 778
SfaNI GCATC 1 cut(s) 777
SfcI CTRYAG 3 cut(s) 65, 222, 742
SinI GGWCC 1 cut(s) 1024
SmlI CTYRAG 3 cut(s) 85, 959, 1042
SmoI CTYRAG 3 cut(s) 85, 959, 1042
Sse9I AATT 8 cut(s) 103, 283, 405, 620, 676, 896, 971, 1016
SsiI CCGC 3 cut(s) 40, 208, 781
SspI AATATT 1 cut(s) 55
SspMI CTAG 7 cut(s) 29, 401, 440, 494, 869, 902, 921
StyD4I CCNGG 1 cut(s) 776
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 1 cut(s) 515
TaiI ACGT 1 cut(s) 422
TaqI TCGA 2 cut(s) 5, 546
TasI AATT 8 cut(s) 103, 283, 405, 620, 676, 896, 971, 1016
TatI WGTACW 1 cut(s) 378
TauI GCSGC 2 cut(s) 43, 211
TfiI GAWTC 2 cut(s) 367, 1051
Tru1I TTAA 7 cut(s) 57, 102, 432, 846, 894, 969, 1043
Tru9I TTAA 7 cut(s) 57, 102, 432, 846, 894, 969, 1043
TscAI CASTG 3 cut(s) 481, 669, 916
TseI GCWGC 2 cut(s) 224, 227
TspDTI ATGAA 6 cut(s) 60, 174, 228, 269, 438, 476
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 3 cut(s) 481, 669, 916
Van91I CCANNNNNTGG 1 cut(s) 566
Vha464I CTTAAG 1 cut(s) 1042
VpaK11BI GGWCC 1 cut(s) 1024
XapI RAATTY 2 cut(s) 283, 896
XbaI TCTAGA 2 cut(s) 28, 439
XmaJI CCTAGG 1 cut(s) 868
XspI CTAG 7 cut(s) 29, 401, 440, 494, 869, 902, 921
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.