Prupe.2G190000_v2.0.a1

DNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012649
Physical Location & Seq
Reverse (-)
22931913 .. 22935824
3912 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G190000.1

Sequence Viewer

Length: 1068 bp
ATGTCTAGACCAAACCACCACCAGCAACAGATTAATCTAGAAATCAAGCGGCATGAAGATAATATTAAATTTCTGCAGAGTGAGATAAACCGCTTGAGTGAATCTATACTTGATTTGCAAGTGAGTCTTGGAAAGCATCTCCCAGCCAATGGAACTGGAACAACAAATGAAAGCAGCACTACTCTTGCTGAGAAGGATGAAACAGAACAGATATTGCGGCATGAGAAATCTGCAGCTAGCTTATTGTGCAGGCTGAACCTGTTGAAATCTCCTCACACGACTCAGGCTTTGAATTTGGCTCTGACAAAGGATGTTCTGGGTATTGTTGGCATTGTTGCCACCCTTGGCAGAGTCGATGATGACAACCTTAGCAGGCTTCTCTCAGAATACTTGGGACTGGAAACGATGCTAGCAATTGTATGCAGGACGTATGAAGGTGTTAAGGTTCTAGAGAAGTATGATGCGGATGGCACAATAATCAGCACTGCCGGTATACATGGGCTAGGATCTTCTATTGGGAAGAGCATAAAAGGGCGGTTTCTTGTTATATGTCTTGAAGATTTAAGCCCATATGTTGGGGGATTTGTAGCTGATGACCCACAAAGGAAGCTTTCTCTTCCAAAACCAAAACTACCAAATGGGGAGTGTCCGCCTGGCTTTCTTGATTATGCAGTGAACACAATCAATTTGGATGACAAAAACTTGGATTGTCTCACCAGCGGTGGGCATGGTCTCAGAGAGACACTATTCTATAGCCTCTTTTCTCGCCTCCAAATATATAGAACCAGAGCGGAGATGCGTCTTGCTCTGCCATGCATAAATGATGGAGCACTGTCTTTAGATGGCGGGGTTATTAAAAAGAGTGGCGTGTTCATCCTGGGAAGCAGGAAAGATATAGAGGTCAAATTTCCTGCAACCTCCGTAGAATCTAGTATGTCTGCAAAATACCTTGAAACTGAGGATATGATCAAGAAGCTGAAATGGGAGCGATCTCATGTTACCGAGGATATGCAAAGAGAACAAGAATTGTTGGACTTCGCTAAGACAAACTTCACCAGACAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.38

Weight (kDa)

6.17

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 149, 575
AccBSI CCGCTC 1 cut(s) 791
AccI GTMKAC 1 cut(s) 493
AciI CCGC 9 cut(s) 49, 91, 217, 464, 535, 650, 720, 791, 846
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 3 cut(s) 68, 292, 905
AfiI CCNNNNNNNGG 3 cut(s) 149, 575, 723
AgsI TTSAA 4 cut(s) 265, 292, 557, 953
AjnI CCWGG 2 cut(s) 652, 876
AluBI AGCT 5 cut(s) 236, 240, 590, 610, 976
AluI AGCT 5 cut(s) 236, 240, 590, 610, 976
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 3 cut(s) 716, 734, 737
AlwI GGATC 1 cut(s) 514
ApeKI GCWGC 2 cut(s) 174, 233
ApoI RAATTY 3 cut(s) 68, 292, 905
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AseI ATTAAT 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 706, 1045
AsuNHI GCTAGC 2 cut(s) 236, 409
Bbv12I GWGCWC 1 cut(s) 832
BbvI GCAGC 2 cut(s) 186, 245
BccI CCATC 3 cut(s) 461, 818, 836
BciT130I CCWGG 2 cut(s) 654, 878
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 3 cut(s) 716, 734, 737
BfaI CTAG 7 cut(s) 6, 38, 237, 410, 449, 503, 930
BfmI CTRYAG 3 cut(s) 74, 231, 751
BisI GCNGC 4 cut(s) 50, 175, 218, 234
BlsI GCNGC 4 cut(s) 51, 176, 219, 235
Bme1390I CCNGG 2 cut(s) 654, 878
BmrFI CCNGG 2 cut(s) 654, 878
BmsI GCATC 4 cut(s) 145, 396, 451, 786
BmtI GCTAGC 2 cut(s) 240, 413
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 343, 877, 1002
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 575, 723
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 160, 402
BseBI CCWGG 2 cut(s) 654, 878
BseDI CCNNGG 3 cut(s) 343, 877, 1002
BseGI GGATG 5 cut(s) 202, 316, 472, 697, 873
BseLI CCNNNNNNNGG 3 cut(s) 149, 575, 723
BseMII CTCAG 5 cut(s) 180, 296, 396, 748, 948
BseNI ACTGG 2 cut(s) 160, 402
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 186, 245
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 832
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 149, 575, 723
BsmAI GTCTC 3 cut(s) 716, 734, 737
BsmFI GGGAC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 737
Bsp1286I GDGCHC 1 cut(s) 832
Bsp143I GATC 3 cut(s) 506, 966, 989
BspACI CCGC 9 cut(s) 49, 91, 217, 464, 535, 650, 720, 791, 846
BspCNI CTCAG 5 cut(s) 181, 295, 395, 747, 949
BspMAI CTGCAG 2 cut(s) 78, 235
BspOI GCTAGC 2 cut(s) 240, 413
BspPI GGATC 1 cut(s) 514
BspQI GCTCTTC 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 737
BsrBI CCGCTC 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 2 cut(s) 160, 402
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 3 cut(s) 343, 877, 1002
BssMI GATC 3 cut(s) 506, 966, 989
BssNAI GTATAC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 494
Bst2UI CCWGG 2 cut(s) 654, 878
Bst4CI ACNGT 1 cut(s) 834
Bst6I CTCTTC 2 cut(s) 515, 621
BstC8I GCNNGC 4 cut(s) 238, 251, 374, 411
BstDEI CTNAG 7 cut(s) 189, 282, 368, 382, 734, 957, 1041
BstF5I GGATG 5 cut(s) 202, 316, 472, 697, 873
BstKTI GATC 3 cut(s) 509, 969, 992
BstMAI GTCTC 3 cut(s) 716, 734, 737
BstMBI GATC 3 cut(s) 506, 966, 989
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 2 cut(s) 654, 878
BstSCI CCNGG 2 cut(s) 652, 876
BstSFI CTRYAG 3 cut(s) 74, 231, 751
BstV1I GCAGC 2 cut(s) 186, 245
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BstZ17I GTATAC 1 cut(s) 494
BtsCI GGATG 5 cut(s) 202, 316, 472, 697, 873
BtsI GCAGTG 2 cut(s) 483, 678
BtsIMutI CAGTG 3 cut(s) 483, 678, 830
Cac8I GCNNGC 4 cut(s) 238, 251, 374, 411
Cfr10I RCCGGY 1 cut(s) 488
CseI GACGC 1 cut(s) 788
CviAII CATG 6 cut(s) 53, 221, 497, 728, 813, 995
DdeI CTNAG 7 cut(s) 189, 282, 368, 382, 734, 957, 1041
DpnI GATC 3 cut(s) 508, 968, 991
DpnII GATC 3 cut(s) 506, 966, 989
Eam1104I CTCTTC 2 cut(s) 515, 621
EarI CTCTTC 2 cut(s) 515, 621
EciI GGCGGA 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 737
EcoRII CCWGG 2 cut(s) 652, 876
EcoT14I CCWWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 818
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 6 cut(s) 56, 224, 500, 731, 816, 998
FalI AAGNNNNNCTT 4 cut(s) 111, 143, 1034, 1066
FaqI GGGAC 1 cut(s) 408
FatI CATG 6 cut(s) 52, 220, 496, 727, 812, 994
FauI CCCGC 1 cut(s) 839
FauNDI CATATG 1 cut(s) 571
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 50, 175, 218, 234
FokI GGATG 5 cut(s) 209, 323, 479, 704, 860
Fsp4HI GCNGC 4 cut(s) 50, 175, 218, 234
FspBI CTAG 7 cut(s) 6, 38, 237, 410, 449, 503, 930
GluI GCNGC 4 cut(s) 50, 175, 218, 234
GsaI CCCAGC 1 cut(s) 146
HapII CCGG 1 cut(s) 489
HgaI GACGC 1 cut(s) 788
Hin1II CATG 6 cut(s) 56, 224, 500, 731, 816, 998
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 5 cut(s) 101, 124, 280, 351, 926
HpaII CCGG 1 cut(s) 489
HphI GGTGA 2 cut(s) 706, 1045
Hpy166II GTNNAC 2 cut(s) 494, 676
Hpy188I TCNGA 3 cut(s) 303, 385, 737
Hpy188III TCNNGA 6 cut(s) 6, 38, 449, 554, 662, 970
Hpy8I GTNNAC 2 cut(s) 494, 676
HpyAV CCTTC 2 cut(s) 187, 428
HpyCH4III ACNGT 1 cut(s) 834
HpyCH4IV ACGT 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 7 cut(s) 189, 282, 368, 382, 734, 957, 1041
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 6 cut(s) 56, 224, 500, 731, 816, 998
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 3 cut(s) 506, 966, 989
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 827, 985
Lsp1109I GCAGC 2 cut(s) 186, 245
LweI GCATC 4 cut(s) 145, 396, 451, 786
MaeI CTAG 7 cut(s) 6, 38, 237, 410, 449, 503, 930
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 997
MalI GATC 3 cut(s) 508, 968, 991
MbiI CCGCTC 1 cut(s) 791
MboI GATC 3 cut(s) 506, 966, 989
MboII GAAGA 5 cut(s) 68, 501, 532, 569, 608
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 506
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 6 cut(s) 68, 292, 414, 685, 905, 1025
MlyI GAGTC 3 cut(s) 133, 274, 360
MmeI TCCRAC 1 cut(s) 1011
MnlI CCTC 7 cut(s) 282, 767, 779, 892, 928, 952, 997
Mph1103I ATGCAT 1 cut(s) 818
MseI TTAA 5 cut(s) 33, 66, 441, 563, 855
MspA1I CMGCKG 1 cut(s) 720
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 654, 878
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 2 cut(s) 654, 878
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 571
NdeII GATC 3 cut(s) 506, 966, 989
NheI GCTAGC 2 cut(s) 236, 409
NlaIII CATG 6 cut(s) 56, 224, 500, 731, 816, 998
NsiI ATGCAT 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 101, 926
PflMI CCANNNNNTGG 2 cut(s) 149, 575
PkrI GCNGC 4 cut(s) 51, 176, 219, 235
PleI GAGTC 3 cut(s) 132, 274, 359
PpsI GAGTC 3 cut(s) 132, 274, 359
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 652, 876
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 652, 876
PstI CTGCAG 2 cut(s) 78, 235
PsuI RGATCY 1 cut(s) 506
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 5 cut(s) 33, 66, 441, 563, 855
SatI GCNGC 4 cut(s) 50, 175, 218, 234
Sau3AI GATC 3 cut(s) 506, 966, 989
SchI GAGTC 3 cut(s) 133, 274, 360
ScrFI CCNGG 2 cut(s) 654, 878
SduI GDGCHC 1 cut(s) 832
SfaNI GCATC 4 cut(s) 145, 396, 451, 786
SfcI CTRYAG 3 cut(s) 74, 231, 751
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 6 cut(s) 68, 292, 414, 685, 905, 1025
SsiI CCGC 9 cut(s) 49, 91, 217, 464, 535, 650, 720, 791, 846
SspI AATATT 1 cut(s) 64
SspMI CTAG 7 cut(s) 6, 38, 237, 410, 449, 503, 930
StyD4I CCNGG 2 cut(s) 652, 876
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 834
TaiI ACGT 1 cut(s) 431
TaqI TCGA 1 cut(s) 354
TasI AATT 6 cut(s) 68, 292, 414, 685, 905, 1025
TauI GCSGC 2 cut(s) 52, 220
TfiI GAWTC 2 cut(s) 101, 926
Tru1I TTAA 5 cut(s) 33, 66, 441, 563, 855
Tru9I TTAA 5 cut(s) 33, 66, 441, 563, 855
TscAI CASTG 3 cut(s) 490, 678, 837
TseI GCWGC 2 cut(s) 174, 233
TspDTI ATGAA 5 cut(s) 69, 183, 213, 447, 862
TspGWI ACGGA 1 cut(s) 910
TspRI CASTG 3 cut(s) 490, 678, 837
Van91I CCANNNNNTGG 2 cut(s) 149, 575
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 3 cut(s) 68, 292, 905
XbaI TCTAGA 3 cut(s) 5, 37, 448
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 7 cut(s) 6, 38, 237, 410, 449, 503, 930
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.