Rorug01G0274200

DNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012649
Physical Location & Seq
Reverse (-)
38670891 .. 38671994
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0274200.1

Sequence Viewer

Length: 819 bp
ATGCCGCGGTGGTTTGAGCTCAACCTTGATCGCCGCAAAGAGATTTCGCTGAAGGAGGCCGTCGGAGCCATGGCTCAAGTAGCCTCAACCGACATAGAGCTTGCCGGCCGTCCCCAAAAGACCGACCTCTGCGTCACTCCGAAGATCGTTGCACTGGTTTCTAGAACCCAGGCTACTGATGCCGTCAGCATGCTGCTGATGCCGAAACCGTTGATGTCTAGCTTCGAGTGCTCTGAAAGCCGGAATCTGCAGTTCAATCTGGAAATCTTCCACCACCAATTGCAGCTGAACAATCGGTATGCACTCATTCTTTATGGTGAGGTAGAATGTAAGGATATGCTTGGCTATGAAGATCCGATCGGCTTCGCGACCCTGAATTCCGACAGGAAGCTCAAATCCAAGGGTAAGATTGTGAAAGATGTCCGGTACACTATATTCTCCCCATTCGATGGGCAGCCGTGTGCAGATCATGATAGGGCAAGAGGAGAAGGAGTATTCCTAGCAGCAGCAACATTGAGACCCGAGACCATGTATGGACAAACAAATGCATGGGTATTACCCGATGCTAAGTATGGAGCCTTTGAGATCAACGATACAGATGTCTTTATTCTTACACATAGAGCAGCACTTAATCTTGCCTATCAGAACTACTCTAGGATCCCAGAGAAACCTACTTGCTTGGTCGAACTGACTGGTTATGATTTGATTGGCCTTCCATTAAAGTCACCACTTGCATTCAATCAGATCATATATGCCCTTCCTATGTTGACCATCCCAACTGACAAAGGCACTGGGATAATTAGTCACCAGCGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.52

Weight (kDa)

6.53

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 449
AccII CGCG 2 cut(s) 7, 368
AciI CCGC 3 cut(s) 5, 7, 34
AclWI GGATC 3 cut(s) 347, 652, 665
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 428, 814
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 2 cut(s) 256, 739
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 5 cut(s) 19, 100, 222, 286, 391
AluI AGCT 5 cut(s) 19, 100, 222, 286, 391
Alw21I GWGCWC 2 cut(s) 21, 233
Alw26I GTCTC 2 cut(s) 511, 518
AlwI GGATC 3 cut(s) 347, 652, 665
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 3 cut(s) 57, 106, 709
ApeKI GCWGC 6 cut(s) 193, 283, 454, 503, 506, 623
ApoI RAATTY 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 329, 717, 797
AvaI CYCGRG 1 cut(s) 521
BaeI ACNNNNGTAYC 3 cut(s) 585, 618, 796
BamHI GGATCC 1 cut(s) 657
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 21, 233
BbvI GCAGC 6 cut(s) 180, 295, 466, 515, 518, 635
BccI CCATC 2 cut(s) 443, 779
BceAI ACGGC 4 cut(s) 44, 93, 167, 442
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 511, 518
BfaI CTAG 5 cut(s) 162, 219, 500, 654, 817
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 8 cut(s) 5, 34, 194, 284, 455, 504, 507, 624
BlsI GCNGC 8 cut(s) 6, 35, 195, 285, 456, 505, 508, 625
Bme1390I CCNGG 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 521
BmiI GGNNCC 3 cut(s) 67, 577, 659
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 3 cut(s) 169, 189, 553
BmuI ACTGGG 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 60
BsaI GGTCTC 2 cut(s) 511, 518
BsaJI CCNNGG 4 cut(s) 5, 69, 168, 399
BsaWI WCCGGW 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 3 cut(s) 159, 697, 796
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 4 cut(s) 5, 69, 168, 399
BseGI GGATG 1 cut(s) 771
BseLI CCNNNNNNNGG 1 cut(s) 449
BseNI ACTGG 3 cut(s) 159, 697, 796
BseRI GAGGAG 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 6 cut(s) 180, 295, 466, 515, 518, 635
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 2 cut(s) 7, 368
Bsh1285I CGRYCG 2 cut(s) 109, 360
BshFI GGCC 3 cut(s) 59, 108, 711
BsiEI CGRYCG 2 cut(s) 109, 360
BsiHKAI GWGCWC 2 cut(s) 21, 233
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 3 cut(s) 105, 241, 424
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 511, 518
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 3 cut(s) 59, 108, 711
Bso31I GGTCTC 2 cut(s) 511, 518
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 21, 233
Bsp143I GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
Bsp19I CCATGG 1 cut(s) 69
Bsp68I TCGCGA 1 cut(s) 368
BspACI CCGC 3 cut(s) 5, 7, 34
BspANI GGCC 3 cut(s) 59, 108, 711
BspFNI CGCG 2 cut(s) 7, 368
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 3 cut(s) 67, 577, 659
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 3 cut(s) 347, 652, 665
BspTNI GGTCTC 2 cut(s) 511, 518
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 3 cut(s) 159, 697, 796
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 5, 69, 168, 399
BssMI GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
BssT1I CCWWGG 2 cut(s) 69, 399
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 3 cut(s) 102, 106, 191
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 2 cut(s) 5, 69
BstF5I GGATG 1 cut(s) 771
BstFNI CGCG 2 cut(s) 7, 368
BstKTI GATC 8 cut(s) 31, 147, 355, 360, 469, 588, 660, 747
BstMAI GTCTC 2 cut(s) 511, 518
BstMBI GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
BstMCI CGRYCG 2 cut(s) 109, 360
BstMWI GCNNNNNNNGC 6 cut(s) 65, 80, 179, 199, 228, 237
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 2 cut(s) 7, 368
BstV1I GCAGC 6 cut(s) 180, 295, 466, 515, 518, 635
BstX2I RGATCY 2 cut(s) 352, 657
BstYI RGATCY 2 cut(s) 352, 657
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 3 cut(s) 59, 108, 711
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 152, 789
BtuMI TCGCGA 1 cut(s) 368
Cac8I GCNNGC 3 cut(s) 102, 106, 191
CciI TCATGA 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 104
Cfr42I CCGCGG 1 cut(s) 8
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 427, 813
CviAII CATG 5 cut(s) 70, 190, 470, 529, 549
CviQI GTAC 2 cut(s) 427, 813
DdeI CTNAG 1 cut(s) 567
DpnI GATC 8 cut(s) 30, 146, 354, 359, 468, 587, 659, 746
DpnII GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 69, 399
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 2 cut(s) 511, 518
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 69, 399
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 69, 399
FaeI CATG 5 cut(s) 73, 193, 473, 532, 552
FaqI GGGAC 1 cut(s) 96
FatI CATG 5 cut(s) 69, 189, 469, 528, 548
Fnu4HI GCNGC 8 cut(s) 5, 34, 194, 284, 455, 504, 507, 624
FokI GGATG 1 cut(s) 758
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 8 cut(s) 5, 34, 194, 284, 455, 504, 507, 624
FspBI CTAG 5 cut(s) 162, 219, 500, 654, 817
GluI GCNGC 8 cut(s) 5, 34, 194, 284, 455, 504, 507, 624
HaeIII GGCC 3 cut(s) 59, 108, 711
HapII CCGG 3 cut(s) 105, 241, 424
HgaI GACGC 1 cut(s) 121
Hin1II CATG 5 cut(s) 73, 193, 473, 532, 552
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 1 cut(s) 244
HpaII CCGG 3 cut(s) 105, 241, 424
HphI GGTGA 3 cut(s) 329, 717, 797
Hpy166II GTNNAC 2 cut(s) 429, 768
Hpy188I TCNGA 7 cut(s) 65, 141, 235, 357, 382, 645, 744
Hpy188III TCNNGA 4 cut(s) 162, 260, 367, 470
Hpy8I GTNNAC 2 cut(s) 429, 768
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 46, 482, 722, 767
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 7 cut(s) 152, 250, 283, 302, 464, 548, 734
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 80, 179, 199, 228, 237
HpyF3I CTNAG 1 cut(s) 567
Hsp92II CATG 5 cut(s) 73, 193, 473, 532, 552
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
LmnI GCTCC 2 cut(s) 65, 575
Lsp1109I GCAGC 6 cut(s) 180, 295, 466, 515, 518, 635
LweI GCATC 3 cut(s) 169, 189, 553
MaeI CTAG 5 cut(s) 162, 219, 500, 654, 817
MaeIII GTNAC 3 cut(s) 133, 723, 803
MalI GATC 8 cut(s) 30, 146, 354, 359, 468, 587, 659, 746
MboI GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
MboII GAAGA 3 cut(s) 154, 259, 362
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 2 cut(s) 352, 657
MhlI GDGCHC 2 cut(s) 21, 233
MluCI AATT 3 cut(s) 278, 376, 798
MmeI TCCRAC 2 cut(s) 43, 405
MnlI CCTC 5 cut(s) 49, 94, 137, 313, 476
Mph1103I ATGCAT 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 2 cut(s) 630, 719
MspA1I CMGCKG 2 cut(s) 7, 286
MspI CCGG 3 cut(s) 105, 241, 424
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 7, 368
MwoI GCNNNNNNNGC 6 cut(s) 65, 80, 179, 199, 228, 237
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 69
NdeII GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 73, 193, 473, 532, 552
NlaIV GGNNCC 3 cut(s) 67, 577, 659
NmuCI GTSAC 3 cut(s) 133, 723, 803
NruI TCGCGA 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PagI TCATGA 1 cut(s) 469
PctI GAATGC 1 cut(s) 734
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 8 cut(s) 6, 35, 195, 285, 456, 505, 508, 625
Ple19I CGATCG 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 3 cut(s) 67, 577, 659
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 2 cut(s) 352, 657
PvuI CGATCG 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 286
RruI TCGCGA 1 cut(s) 368
RsaI GTAC 2 cut(s) 428, 814
RsaNI GTAC 2 cut(s) 427, 813
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 630, 719
SatI GCNGC 8 cut(s) 5, 34, 194, 284, 455, 504, 507, 624
Sau3AI GATC 8 cut(s) 28, 144, 352, 357, 466, 585, 657, 744
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 21, 233
SfaNI GCATC 3 cut(s) 169, 189, 553
SfcI CTRYAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SphI GCATGC 1 cut(s) 193
Sse9I AATT 3 cut(s) 278, 376, 798
SsiI CCGC 3 cut(s) 5, 7, 34
SspMI CTAG 5 cut(s) 162, 219, 500, 654, 817
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 69, 399
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 225, 447, 684
TaqII GACCGA 1 cut(s) 137
TasI AATT 3 cut(s) 278, 376, 798
TauI GCSGC 2 cut(s) 7, 36
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 630, 719
Tru9I TTAA 2 cut(s) 630, 719
TscAI CASTG 2 cut(s) 159, 796
TseFI GTSAC 3 cut(s) 133, 723, 803
TseI GCWGC 6 cut(s) 193, 283, 454, 503, 506, 623
Tsp45I GTSAC 3 cut(s) 133, 723, 803
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 159, 796
Van91I CCANNNNNTGG 1 cut(s) 449
XapI RAATTY 1 cut(s) 376
XbaI TCTAGA 1 cut(s) 161
XceI RCATGY 1 cut(s) 193
XspI CTAG 5 cut(s) 162, 219, 500, 654, 817
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.