Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007883

Physical Location & Seq

Genomic Coordinates Reverse (-)

21276393 .. 21279880

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1099500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGACGAGTCTGCACGGGGGCACGAAGGCCGAGTCGACTCACCAACGGCTCTACGAGTTCGCAAAATCAGCACTTACCAGAATCTTCGTCCACCCTTACGCCACGGTGTGCGAATTGTACTGCGGCGGAGGAGTCGACGCCGAGAAATGGGACGATGCTCAAATCGGCCATTACATTGGGATCGATGTTTCTTCTTCGGGAATAAGCCAGAGAAGAGAAGCGTGGGAGAGCCAGAGGAAGGCTTACACTGCTGATTTCTTTGAGCTTGACCCTTGCATGGAAGATGTGGAGATGCATCTAAAAGATAAGGCAAACACAGCTGATTTAGTTTGCTGCTTGCAGAATTTGCAGCTGTGTTTCCAAACCGAGGAGAAAGCAAGGAAACTTTTGCTTAATGTGTCATCCTTATTGAAACCGAGGGGATATTTTTTTGGTATTACTCCTGACTCATCTACAATATGGGCAAAGTACCAGAAGAATGTTGAAGCATATCACAATAGAAGTGGTGGCATGAAACCAAACATTGTCCCCAATTGCATTAGATCAGAGAACTACATGATCACCTTTGAAGTTGAGGAAGAGAAGTTTCCTATATTTGGAAAGAAATACCAATTGAAATTTGCCAATGATTTCTCTCCCGAAAATCATGTCTTGGTTCATTTCCCAAGCTTCATCAGGTTAGCCAGAGAAGCTGGTCTTGAGTATGTGGAGATTCAAAACTTAACTGAATTTTACGATGACAACAGAGCGCAATTTGCAGGCATGATAATGAATTCGTGTTCGAACCTTGTGGATCCTAGAGGAAGACTTCTTCCTCGATCATATGATGTATTAGGTTTGTATACCACATTTATATTCCAAAAGCCAGACCCTGATATTACTCCACCGCTCATGACACCAGTGCTGCACGATGTAACTTACATTCAAGATGAGGAGAGAGAGTGGCAAGTGCCAGTGACAACCATCTGGAGAGATGATGAAAAGAGCGTGCCTGTAGAGCCGCCTCCTGGCCTGGGCAAGATTAGTGAACAGAAAGGGATTTTGGGTCCTGGCCCTGCTGAGTTGCGTTTTTCGGAGGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

362

Amino Acids

41.16

Weight (kDa)

5.25

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	22 - 288	6.5e-34	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	34 - 168	2.3e-07	Methyltransferase domain
Methyltransf_25	PF13649	36 - 141	2.1e-06	Methyltransferase domain
Methyltransf_12	PF08242	41 - 143	1.6e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52210 AT3G52210 AT3G52210
fragaria_vesca	FvH4_7g18320 FvH4_7g18320 FvH4_7g18320
malus_domestica	MD01G1099500.v1.1 MD07G1166400.v1.1 MD16G1171900.v1.1
prunus_persica	Prupe.2G205200_v2.0.a1 Prupe.2G205200_v2.0.a1
pyrus_communis	pycom01g12660 pycom07g16170
rosa_chinensis	RchiOBHm_Chr1g0362021
rosa_laevigata	RLG00000027679
rosa_multiflora	Rmu_sc0010614.1_g000007
rosa_roxburghii	Rroxscaffold_4G00294580
rosa_rugosa	Rorug01G0292700 Rorug01G0292800
rosa_samantha	Rh1AG303100 Rh1BG266300 Rh1CG284500 Rh1DG296300
rosa_wichuraiana	Rw1G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	889
AccI	GTMKAC	3 cut(s)	35, 135, 842
AciI	CCGC	4 cut(s)	123, 126, 887, 1001
AclWI	GGATC	3 cut(s)	188, 788, 801
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	4 cut(s)	343, 617, 728, 772
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	119, 470
AfiI	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 1007, 1013
AgsI	TTSAA	6 cut(s)	412, 485, 569, 616, 716, 926
AjnI	CCWGG	3 cut(s)	1006, 1011, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
AluBI	AGCT	5 cut(s)	265, 320, 352, 669, 692
AluI	AGCT	5 cut(s)	265, 320, 352, 669, 692
AlwI	GGATC	3 cut(s)	188, 788, 801
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	4 cut(s)	27, 166, 1009, 1051
ApeKI	GCWGC	3 cut(s)	333, 349, 904
ApoI	RAATTY	4 cut(s)	343, 617, 728, 772
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 49, 633, 665
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	2 cut(s)	1046, 1052
AsuHPI	GGTGA	2 cut(s)	32, 553
AsuII	TTCGAA	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	1046
BaeGI	GKGCMC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	811
BbvI	GCAGC	3 cut(s)	320, 361, 891
BccI	CCATC	1 cut(s)	971
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	3 cut(s)	1008, 1013, 1050
BclI	TGATCA	1 cut(s)	558
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	1 cut(s)	993
BisI	GCNGC	5 cut(s)	124, 334, 350, 905, 1001
BlsI	GCNGC	5 cut(s)	125, 335, 351, 906, 1002
Bme1390I	CCNGG	3 cut(s)	1008, 1013, 1050
Bme18I	GGWCC	1 cut(s)	1046
BmgT120I	GGNCC	2 cut(s)	1046, 1052
BmiI	GGNNCC	2 cut(s)	795, 1047
BmrFI	CCNGG	3 cut(s)	1008, 1013, 1050
BmsI	GCATC	3 cut(s)	145, 282, 304
BpiI	GAAGAC	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	988
Bpu14I	TTCGAA	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	719
Bsa29I	ATCGAT	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	102, 366, 416, 1012
BsaXI	ACNNNNNCTCC	2 cut(s)	926, 956
Bsc4I	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 1007, 1013
Bse1I	ACTGG	2 cut(s)	899, 953
BseBI	CCWGG	3 cut(s)	1008, 1013, 1050
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	4 cut(s)	102, 366, 416, 1012
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 1007, 1013
BseMII	CTCAG	1 cut(s)	1050
BseNI	ACTGG	2 cut(s)	899, 953
BseRI	GAGGAG	3 cut(s)	144, 383, 947
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	320, 361, 891
BsgI	GTGCAG	1 cut(s)	890
BshFI	GGCC	4 cut(s)	29, 168, 1011, 1053
BshVI	ATCGAT	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	164, 512
BslI	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 1007, 1013
BsmFI	GGGAC	2 cut(s)	164, 512
BsnI	GGCC	4 cut(s)	29, 168, 1011, 1053
Bsp119I	TTCGAA	1 cut(s)	782
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	180, 542, 558, 793, 818
BspACI	CCGC	4 cut(s)	123, 126, 887, 1001
BspANI	GGCC	4 cut(s)	29, 168, 1011, 1053
BspCNI	CTCAG	1 cut(s)	1051
BspDI	ATCGAT	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	795, 1047
BspPI	GGATC	3 cut(s)	188, 788, 801
BspT104I	TTCGAA	1 cut(s)	782
BsrBI	CCGCTC	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	899, 953
BssECI	CCNNGG	4 cut(s)	102, 366, 416, 1012
BssMI	GATC	5 cut(s)	180, 542, 558, 793, 818
BssNAI	GTATAC	1 cut(s)	843
BssNI	GRCGYC	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	843
Bst2UI	CCWGG	3 cut(s)	1008, 1013, 1050
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	208, 573
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	338, 760, 989
BstDEI	CTNAG	1 cut(s)	1059
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	5 cut(s)	183, 545, 561, 796, 821
BstMBI	GATC	5 cut(s)	180, 542, 558, 793, 818
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 248, 317, 346, 689, 755, 997
BstNI	CCWGG	3 cut(s)	1008, 1013, 1050
BstSCI	CCNGG	3 cut(s)	1006, 1011, 1048
BstSFI	CTRYAG	1 cut(s)	993
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	320, 361, 891
BstV2I	GAAGAC	1 cut(s)	811
BstX2I	RGATCY	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	793
BstZ17I	GTATAC	1 cut(s)	843
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	29, 168, 1011, 1053
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	246, 906, 960
Cac8I	GCNNGC	3 cut(s)	338, 760, 989
CaiI	CAGNNNCTG	1 cut(s)	872
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	751
Cfr13I	GGNCC	2 cut(s)	1046, 1052
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	118, 469
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	6 cut(s)	277, 511, 556, 647, 763, 892
CviQI	GTAC	2 cut(s)	118, 469
DdeI	CTNAG	1 cut(s)	1059
DpnI	GATC	5 cut(s)	182, 544, 560, 795, 820
DpnII	GATC	5 cut(s)	180, 542, 558, 793, 818
DraIII	CACNNNGTG	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	208, 573
EarI	CTCTTC	2 cut(s)	208, 573
EciI	GGCGGA	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	1046
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	3 cut(s)	1006, 1011, 1048
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	6 cut(s)	280, 514, 559, 650, 766, 895
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	2 cut(s)	164, 512
FatI	CATG	6 cut(s)	276, 510, 555, 646, 762, 891
FauNDI	CATATG	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	3 cut(s)	35, 135, 842
Fnu4HI	GCNGC	5 cut(s)	124, 334, 350, 905, 1001
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	124, 334, 350, 905, 1001
FspBI	CTAG	1 cut(s)	798
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	5 cut(s)	124, 334, 350, 905, 1001
GsuI	CTGGAG	1 cut(s)	988
HaeIII	GGCC	4 cut(s)	29, 168, 1011, 1053
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	280, 514, 559, 650, 766, 895
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HincII	GTYRAC	2 cut(s)	36, 136
HindII	GTYRAC	2 cut(s)	36, 136
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	7 cut(s)	7, 32, 37, 81, 132, 446, 712
HphI	GGTGA	2 cut(s)	32, 553
Hpy166II	GTNNAC	5 cut(s)	36, 91, 136, 843, 1028
Hpy188I	TCNGA	2 cut(s)	547, 1075
Hpy188III	TCNNGA	7 cut(s)	198, 443, 638, 698, 892, 926, 967
Hpy8I	GTNNAC	5 cut(s)	36, 91, 136, 843, 1028
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	19, 232
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	8 cut(s)	13, 276, 295, 340, 349, 537, 758, 907
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 248, 317, 346, 689, 755, 997
HpyF3I	CTNAG	1 cut(s)	1059
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	280, 514, 559, 650, 766, 895
HspAI	GCGC	1 cut(s)	749
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	5 cut(s)	180, 542, 558, 793, 818
Lsp1109I	GCAGC	3 cut(s)	320, 361, 891
LweI	GCATC	3 cut(s)	145, 282, 304
MaeI	CTAG	1 cut(s)	798
MaeIII	GTNAC	2 cut(s)	913, 955
MalI	GATC	5 cut(s)	182, 544, 560, 795, 820
MbiI	CCGCTC	1 cut(s)	889
MboI	GATC	5 cut(s)	180, 542, 558, 793, 818
MboII	GAAGA	9 cut(s)	76, 183, 186, 225, 293, 487, 590, 803, 816
MfeI	CAATTG	2 cut(s)	532, 611
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	8 cut(s)	113, 343, 532, 611, 617, 728, 752, 772
MlyI	GAGTC	5 cut(s)	16, 31, 41, 141, 440
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	393, 722
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	2 cut(s)	320, 352
MspR9I	CCNGG	3 cut(s)	1008, 1013, 1050
MunI	CAATTG	2 cut(s)	532, 611
MvaI	CCWGG	3 cut(s)	1008, 1013, 1050
MwoI	GCNNNNNNNGC	7 cut(s)	68, 248, 317, 346, 689, 755, 997
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	5 cut(s)	180, 542, 558, 793, 818
NlaIII	CATG	6 cut(s)	280, 514, 559, 650, 766, 895
NlaIV	GGNNCC	2 cut(s)	795, 1047
NmeAIII	GCCGAG	2 cut(s)	55, 166
NmuCI	GTSAC	1 cut(s)	955
NsiI	ATGCAT	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	782
PagI	TCATGA	1 cut(s)	891
PfeI	GAWTC	2 cut(s)	81, 712
PkrI	GCNGC	5 cut(s)	125, 335, 351, 906, 1002
PleI	GAGTC	5 cut(s)	15, 31, 40, 140, 440
PpsI	GAGTC	5 cut(s)	15, 31, 40, 140, 440
PpuMI	RGGWCCY	1 cut(s)	1046
Psp5II	RGGWCCY	1 cut(s)	1046
Psp6I	CCWGG	3 cut(s)	1006, 1011, 1048
PspGI	CCWGG	3 cut(s)	1006, 1011, 1048
PspN4I	GGNNCC	2 cut(s)	795, 1047
PspPI	GGNCC	2 cut(s)	1046, 1052
PspPPI	RGGWCCY	1 cut(s)	1046
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	793
PvuII	CAGCTG	2 cut(s)	320, 352
RsaI	GTAC	2 cut(s)	119, 470
RsaNI	GTAC	2 cut(s)	118, 469
RseI	CAYNNNNRTG	1 cut(s)	767
SalI	GTCGAC	2 cut(s)	34, 134
SaqAI	TTAA	2 cut(s)	393, 722
SatI	GCNGC	5 cut(s)	124, 334, 350, 905, 1001
Sau3AI	GATC	5 cut(s)	180, 542, 558, 793, 818
Sau96I	GGNCC	2 cut(s)	1046, 1052
SchI	GAGTC	5 cut(s)	16, 31, 41, 141, 440
ScrFI	CCNGG	3 cut(s)	1008, 1013, 1050
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	9 cut(s)	267, 322, 354, 566, 671, 680, 694, 789, 838
SfaNI	GCATC	3 cut(s)	145, 282, 304
SfcI	CTRYAG	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	782
SinI	GGWCC	1 cut(s)	1046
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	8 cut(s)	113, 343, 532, 611, 617, 728, 752, 772
SsiI	CCGC	4 cut(s)	123, 126, 887, 1001
SspMI	CTAG	1 cut(s)	798
StyD4I	CCNGG	3 cut(s)	1006, 1011, 1048
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	5 cut(s)	35, 135, 183, 782, 817
TasI	AATT	8 cut(s)	113, 343, 532, 611, 617, 728, 752, 772
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	126, 1003
TfiI	GAWTC	2 cut(s)	81, 712
Tru1I	TTAA	2 cut(s)	393, 722
Tru9I	TTAA	2 cut(s)	393, 722
TscAI	CASTG	3 cut(s)	253, 906, 960
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	3 cut(s)	333, 349, 904
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	5 cut(s)	527, 647, 661, 785, 993
TspRI	CASTG	3 cut(s)	253, 906, 960
VpaK11BI	GGWCC	1 cut(s)	1046
XapI	RAATTY	4 cut(s)	343, 617, 728, 772
XmiI	GTMKAC	3 cut(s)	35, 135, 842
XspI	CTAG	1 cut(s)	798
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.