Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007883

Physical Location & Seq

Genomic Coordinates Forward (+)

53556325 .. 53559501

Gene Structure 3177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG303100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACGATATAGAGCCACATCTGAATGAGGACACCATTCTGGCTGATTTAGTTTGCTGCTTGCAGAATTTGCAGCTGTGTTTCCAAACTGAAGAGAAAGCAAGGAGGCTCTTGTCAAATGTGTCGTCCTTACTGAAGCCAGGGGGTTATTTTTTTGGTATTACTCCTGACTCATCTACAATATGGGCAAAGTACCAGAAGAATGTAGAAGCATACCACAACAGAAGTGCTGGCATGAAACCAAACATTGTTCCCAACTGCATCAGATCAGAGAACTATGTGATCACTTTTGAAATTGAGGAAGAGAAGTTCCCCTTATTCGGAAAGAAGTACCTGCTAAAGTTGGCTAATGATCTCCCCCCTGAAACCCATTGCTTGGTTCATTTCCCTAGCTTCATTAGGTTAGCCAGAGAAGCTGGTCTTGAGTATGTGGAGATTCAAAATCTAACTGAATTTTATGATGACAACAGAGCACAGTTTGCAGGCATGCTAATGAACTATGGCCCAAACCTTGCGGATCCGAGAGGCAGACTTCTTCCTCGATCATATGATGTGTTAGGTTTGTATACCACATTTATATTTCAAAAGCCAGACCCTGATGTTGCTCCTCCACCTATGACACCGGTGCATCAGGATGCACCATACATTATTGATGAGAAAGAGTGGCAAGGAACCCTCTGGAGAGATGATGAAAAGAGTGCACCTGTAGAGCCGCCTCCTCTTCCCGGCCTAGGGAAGATCAGTGAGCAAAAAGGGATTTTGGGTCCTGGCCCTGCTGAGTTGCGTTTTTCTGAGCCACTTGACCTGGTGGTTGTTGCAAGCAAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

277

Amino Acids

31.37

Weight (kDa)

5.01

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	4 - 196	2e-21	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52210 AT3G52210 AT3G52210
fragaria_vesca	FvH4_7g18320 FvH4_7g18320 FvH4_7g18320
malus_domestica	MD01G1099500.v1.1 MD07G1166400.v1.1 MD16G1171900.v1.1
prunus_persica	Prupe.2G205200_v2.0.a1 Prupe.2G205200_v2.0.a1
pyrus_communis	pycom01g12660 pycom07g16170
rosa_chinensis	RchiOBHm_Chr1g0362021
rosa_laevigata	RLG00000027679
rosa_multiflora	Rmu_sc0010614.1_g000007
rosa_roxburghii	Rroxscaffold_4G00294580
rosa_rugosa	Rorug01G0292700 Rorug01G0292800
rosa_samantha	Rh1AG303100 Rh1BG266300 Rh1CG284500 Rh1DG296300
rosa_wichuraiana	Rw1G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	566
AciI	CCGC	2 cut(s)	515, 713
AclWI	GGATC	2 cut(s)	512, 525
AcsI	RAATTY	2 cut(s)	67, 452
AcuI	CTGAAG	2 cut(s)	111, 155
AfaI	GTAC	2 cut(s)	194, 332
AfiI	CCNNNNNNNGG	5 cut(s)	320, 376, 725, 731, 732
AgeI	ACCGGT	1 cut(s)	622
AgsI	TTSAA	3 cut(s)	293, 440, 584
AjnI	CCWGG	3 cut(s)	139, 766, 804
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	76, 393, 416
AluI	AGCT	3 cut(s)	76, 393, 416
Alw21I	GWGCWC	2 cut(s)	475, 703
Alw44I	GTGCAC	1 cut(s)	699
AlwI	GGATC	2 cut(s)	512, 525
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	3 cut(s)	502, 727, 769
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	2 cut(s)	57, 73
ApoI	RAATTY	2 cut(s)	67, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AsiGI	ACCGGT	1 cut(s)	622
AspA2I	CCTAGG	1 cut(s)	730
AspS9I	GGNCC	3 cut(s)	503, 764, 770
AsuC2I	CCSGG	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	764
AvrII	CCTAGG	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	703
BamHI	GGATCC	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	475, 703
BbvI	GCAGC	2 cut(s)	44, 85
BciT130I	CCWGG	3 cut(s)	141, 768, 806
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	726
BfaI	CTAG	2 cut(s)	390, 731
BfmI	CTRYAG	1 cut(s)	705
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	58, 74, 713
BlnI	CCTAGG	1 cut(s)	730
BlsI	GCNGC	3 cut(s)	59, 75, 714
Bme1390I	CCNGG	4 cut(s)	141, 726, 768, 806
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	3 cut(s)	503, 764, 770
BmiI	GGNNCC	3 cut(s)	519, 673, 765
BmrFI	CCNGG	4 cut(s)	141, 726, 768, 806
BmsI	GCATC	3 cut(s)	270, 625, 637
BpmI	CTGGAG	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	140, 730
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	5 cut(s)	320, 376, 725, 731, 732
Bse118I	RCCGGY	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	141, 768, 806
BseDI	CCNNGG	2 cut(s)	140, 730
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	5 cut(s)	320, 376, 725, 731, 732
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	768, 783
BseRI	GAGGAG	2 cut(s)	597, 708
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	44, 85
BshFI	GGCC	3 cut(s)	504, 729, 771
BshTI	ACCGGT	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	475, 703
BsiSI	CCGG	2 cut(s)	623, 726
BslI	CCNNNNNNNGG	5 cut(s)	320, 376, 725, 731, 732
BsnI	GGCC	3 cut(s)	504, 729, 771
Bsp1286I	GDGCHC	2 cut(s)	475, 703
Bsp143I	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
BspACI	CCGC	2 cut(s)	515, 713
BspANI	GGCC	3 cut(s)	504, 729, 771
BspCNI	CTCAG	2 cut(s)	769, 784
BspLI	GGNNCC	3 cut(s)	519, 673, 765
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	2 cut(s)	512, 525
BsrDI	GCAATG	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	140, 730
BssMI	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
BssNAI	GTATAC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	730
Bst1107I	GTATAC	1 cut(s)	567
Bst2UI	CCWGG	3 cut(s)	141, 768, 806
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	3 cut(s)	87, 297, 726
BstAPI	GCANNNNNTGC	2 cut(s)	70, 479
BstC8I	GCNNGC	5 cut(s)	62, 232, 484, 488, 820
BstDEI	CTNAG	2 cut(s)	777, 792
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	6 cut(s)	269, 285, 355, 520, 545, 741
BstMBI	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 413, 479
BstNI	CCWGG	3 cut(s)	141, 768, 806
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	4 cut(s)	139, 724, 766, 804
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	44, 85
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BstZ17I	GTATAC	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	504, 729, 771
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	748
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	5 cut(s)	62, 232, 484, 488, 820
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	503, 764, 770
CsiI	ACCWGGT	1 cut(s)	804
Csp6I	GTAC	2 cut(s)	193, 331
CspAI	ACCGGT	1 cut(s)	622
CviAII	CATG	2 cut(s)	235, 487
CviQI	GTAC	2 cut(s)	193, 331
DdeI	CTNAG	2 cut(s)	777, 792
DpnI	GATC	6 cut(s)	268, 284, 354, 519, 544, 740
DpnII	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
Eam1104I	CTCTTC	3 cut(s)	87, 297, 726
EarI	CTCTTC	3 cut(s)	87, 297, 726
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	764
Eco57I	CTGAAG	2 cut(s)	111, 155
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	3 cut(s)	139, 766, 804
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	2 cut(s)	238, 490
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 405, 437
FatI	CATG	2 cut(s)	234, 486
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	3 cut(s)	58, 74, 713
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	58, 74, 713
FspBI	CTAG	2 cut(s)	390, 731
GluI	GCNGC	3 cut(s)	58, 74, 713
GsuI	CTGGAG	1 cut(s)	700
HaeIII	GGCC	3 cut(s)	504, 729, 771
HapII	CCGG	2 cut(s)	623, 726
Hin1II	CATG	2 cut(s)	238, 490
HinfI	GANTC	2 cut(s)	170, 436
HpaII	CCGG	2 cut(s)	623, 726
Hpy166II	GTNNAC	2 cut(s)	567, 701
Hpy188I	TCNGA	6 cut(s)	24, 266, 271, 323, 522, 793
Hpy188III	TCNNGA	4 cut(s)	167, 422, 632, 679
Hpy8I	GTNNAC	2 cut(s)	567, 701
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	64, 73, 261, 482, 628, 638, 701, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 413, 479
HpyF3I	CTNAG	2 cut(s)	777, 792
Hsp92II	CATG	2 cut(s)	238, 490
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	2 cut(s)	44, 85
LweI	GCATC	3 cut(s)	270, 625, 637
MabI	ACCWGGT	1 cut(s)	804
MaeI	CTAG	2 cut(s)	390, 731
MalI	GATC	6 cut(s)	268, 284, 354, 519, 544, 740
MboI	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
MboII	GAAGA	6 cut(s)	104, 211, 314, 527, 713, 748
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	2 cut(s)	475, 703
MluCI	AATT	4 cut(s)	67, 294, 452, 829
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	9 cut(s)	22, 99, 292, 518, 549, 618, 686, 726, 729
MslI	CAYNNNNRTG	3 cut(s)	24, 491, 633
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	623, 726
MspR9I	CCNGG	4 cut(s)	141, 726, 768, 806
MvaI	CCWGG	3 cut(s)	141, 768, 806
MwoI	GCNNNNNNNGC	3 cut(s)	70, 413, 479
NciI	CCSGG	1 cut(s)	726
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
NlaIII	CATG	2 cut(s)	238, 490
NlaIV	GGNNCC	3 cut(s)	519, 673, 765
NspI	RCATGY	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	59, 75, 714
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	764
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	139, 766, 804
PspGI	CCWGG	3 cut(s)	139, 766, 804
PspN4I	GGNNCC	3 cut(s)	519, 673, 765
PspPI	GGNCC	3 cut(s)	503, 764, 770
PspPPI	RGGWCCY	1 cut(s)	764
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	2 cut(s)	194, 332
RsaNI	GTAC	2 cut(s)	193, 331
RseI	CAYNNNNRTG	3 cut(s)	24, 491, 633
SatI	GCNGC	3 cut(s)	58, 74, 713
Sau3AI	GATC	6 cut(s)	266, 282, 352, 517, 542, 738
Sau96I	GGNCC	3 cut(s)	503, 764, 770
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	141, 726, 768, 806
SduI	GDGCHC	2 cut(s)	475, 703
SexAI	ACCWGGT	1 cut(s)	804
SfaNI	GCATC	3 cut(s)	270, 625, 637
SfcI	CTRYAG	1 cut(s)	705
SgrAI	CRCCGGYG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	3 cut(s)	24, 491, 633
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	4 cut(s)	67, 294, 452, 829
SsiI	CCGC	2 cut(s)	515, 713
SspMI	CTAG	2 cut(s)	390, 731
StyD4I	CCNGG	4 cut(s)	139, 724, 766, 804
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	541
TasI	AATT	4 cut(s)	67, 294, 452, 829
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	1 cut(s)	436
TscAI	CASTG	1 cut(s)	748
TseI	GCWGC	2 cut(s)	57, 73
TspDTI	ATGAA	5 cut(s)	251, 371, 385, 509, 705
TspRI	CASTG	1 cut(s)	748
Van91I	CCANNNNNTGG	1 cut(s)	376
VneI	GTGCAC	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	2 cut(s)	67, 452
XceI	RCATGY	1 cut(s)	490
XmaJI	CCTAGG	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	566
XspI	CTAG	2 cut(s)	390, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.