Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007883

Physical Location & Seq

Genomic Coordinates Reverse (-)

40894453 .. 40895746

Gene Structure 1294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0292800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAAACATTTTCTCCAATGCTTCCATTACACCACGTCTCACTGCTCAGCACCACCACCTCAGTTTACAGCCAAATCAGCGTTACAGTGTCTGCAGAATTCGTTGCAGTGGTGAAAACCCAACAAGCAAATCAACATCCAATACAGAATCCCAACCAGAAAATGCAAATGTAGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCGTTTTTCAACCCGCCATCCAAAGTTGAAGCTCCTGAAACTGCTCTTGAGCTTGCAAGAGATGGGTCTGGAGCCGTTGATCGTGCTGGAGTAGTAAAATCAATCAAAGATGACTTTGAAAGATCATACTTTGTCACAGGGAACCTTACGCTTGATGCATATGAAGAGGATTGTGAATTTGCTGATCCTGCAAGCTCATTCAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGATCCCTTTTAAAGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGATAAAGGATTGGTCACTGGAGATTCAGTTGTATCTTGTCATTCCCTTGGAGGCCAATTCTATCTGGTATGCTTTTGTGCAGTCACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

202

Amino Acids

22.29

Weight (kDa)

6.09

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	105 - 168	7.5e-06	Uncharacterized conserved protein (DUF2358)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52210 AT3G52210 AT3G52210
fragaria_vesca	FvH4_7g18320 FvH4_7g18320 FvH4_7g18320
malus_domestica	MD01G1099500.v1.1 MD07G1166400.v1.1 MD16G1171900.v1.1
prunus_persica	Prupe.2G205200_v2.0.a1 Prupe.2G205200_v2.0.a1
pyrus_communis	pycom01g12660 pycom07g16170
rosa_chinensis	RchiOBHm_Chr1g0362021
rosa_laevigata	RLG00000027679
rosa_multiflora	Rmu_sc0010614.1_g000007
rosa_roxburghii	Rroxscaffold_4G00294580
rosa_rugosa	Rorug01G0292700 Rorug01G0292800
rosa_samantha	Rh1AG303100 Rh1BG266300 Rh1CG284500 Rh1DG296300
rosa_wichuraiana	Rw1G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	3 cut(s)	401, 459, 472
AcsI	RAATTY	2 cut(s)	99, 398
AfaI	GTAC	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	6 cut(s)	232, 251, 341, 424, 434, 442
AjiI	CACGTC	1 cut(s)	38
AluBI	AGCT	4 cut(s)	254, 274, 417, 493
AluI	AGCT	4 cut(s)	254, 274, 417, 493
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	401, 459, 472
AlwNI	CAGNNNCTG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	99, 398
AsuHPI	GGTGA	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	464
BccI	CCATC	2 cut(s)	247, 278
BceAI	ACGGC	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	295, 365, 466
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	3 cut(s)	312, 330, 555
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	562
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 528, 558
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	2 cut(s)	137, 239
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	62, 76, 192
BseNI	ACTGG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	570
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	301, 344, 406, 464
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	61, 75, 193
BspLI	GGNNCC	3 cut(s)	295, 365, 466
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	3 cut(s)	401, 459, 472
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	4 cut(s)	301, 344, 406, 464
BssT1I	CCWWGG	1 cut(s)	562
Bst4CI	ACNGT	2 cut(s)	89, 452
Bst6I	CTCTTC	1 cut(s)	381
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	276, 415
BstDEI	CTNAG	3 cut(s)	48, 62, 201
BstF5I	GGATG	2 cut(s)	137, 239
BstKTI	GATC	4 cut(s)	304, 347, 409, 467
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	4 cut(s)	301, 344, 406, 464
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 194, 410
BstSFI	CTRYAG	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	137, 239
BtsI	GCAGTG	2 cut(s)	42, 115
BtsIMutI	CAGTG	4 cut(s)	42, 94, 115, 531
Cac8I	GCNNGC	2 cut(s)	276, 415
CaiI	CAGNNNCTG	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	453
CviJI	RGCY	8 cut(s)	73, 254, 274, 296, 417, 430, 493, 570
CviKI_1	RGCY	8 cut(s)	73, 254, 274, 296, 417, 430, 493, 570
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	48, 62, 201
DpnI	GATC	4 cut(s)	303, 346, 408, 466
DpnII	GATC	4 cut(s)	301, 344, 406, 464
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	44
FaiI	YATR	7 cut(s)	195, 349, 382, 384, 488, 497, 586
FauI	CCCGC	1 cut(s)	243
FauNDI	CATATG	1 cut(s)	382
FokI	GGATG	2 cut(s)	124, 226
GsuI	CTGGAG	3 cut(s)	312, 330, 555
HaeIII	GGCC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	149, 539
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	3 cut(s)	257, 269, 291
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	89, 452
HpyCH4IV	ACGT	2 cut(s)	37, 436
HpyCH4V	TGCA	7 cut(s)	96, 108, 167, 278, 380, 413, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 194, 410
HpyF3I	CTNAG	3 cut(s)	48, 62, 201
HpySE526I	ACGT	2 cut(s)	37, 436
Kzo9I	GATC	4 cut(s)	301, 344, 406, 464
LmnI	GCTCC	2 cut(s)	259, 293
LpnPI	CCDG	8 cut(s)	171, 270, 276, 294, 345, 423, 519, 566
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	2 cut(s)	37, 436
MaeIII	GTNAC	4 cut(s)	83, 355, 529, 598
MalI	GATC	4 cut(s)	303, 346, 408, 466
MboI	GATC	4 cut(s)	301, 344, 406, 464
MboII	GAAGA	2 cut(s)	398, 518
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	4 cut(s)	99, 398, 457, 572
MnlI	CCTC	5 cut(s)	71, 208, 382, 508, 560
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	3 cut(s)	180, 473, 607
MspCI	CTTAAG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	79, 194, 410
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	4 cut(s)	301, 344, 406, 464
NlaIV	GGNNCC	3 cut(s)	295, 365, 466
NmuCI	GTSAC	3 cut(s)	355, 529, 598
NsiI	ATGCAT	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	149, 539
Psp1406I	AACGTT	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	295, 365, 466
PstI	CTGCAG	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	180, 473, 607
Sau3AI	GATC	4 cut(s)	301, 344, 406, 464
SetI	ASST	9 cut(s)	40, 63, 186, 256, 276, 369, 419, 439, 495
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	179, 269
SmoI	CTYRAG	2 cut(s)	179, 269
Sse9I	AATT	4 cut(s)	99, 398, 457, 572
SsiI	CCGC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	2 cut(s)	89, 452
TaiI	ACGT	2 cut(s)	40, 439
TasI	AATT	4 cut(s)	99, 398, 457, 572
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	149, 539
Tru1I	TTAA	3 cut(s)	180, 473, 607
Tru9I	TTAA	3 cut(s)	180, 473, 607
TscAI	CASTG	4 cut(s)	49, 94, 115, 538
TseFI	GTSAC	3 cut(s)	355, 529, 598
Tsp45I	GTSAC	3 cut(s)	355, 529, 598
TspDTI	ATGAA	3 cut(s)	399, 503, 512
TspRI	CASTG	4 cut(s)	49, 94, 115, 538
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	99, 398
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.