Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007883

Physical Location & Seq

Genomic Coordinates Reverse (-)

24070796 .. 24074106

Gene Structure 3311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1166400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGTCTGCACGCGGGGACGAAGGCGGAGTCGACTCACCACCGACTCTACGAGTTCGCAAAAGCTGCACTCACCAGAATCTTCGTCCACCCTTACGCCACGGTGTGCGAATTGTACTGCGGCGGAGGAGTCGACGCCGAGAAGTGGGACGATGCTCAAATCGGCCATTACATCGGAATCGATATTTCGTCGTCGGGAATAAGCCAGAGAAGAGAAGCGTGGGAGAGCCAGAGGAAGGCTTACACTGCTGACTTCTTTGAGCTTGACCCTTGCATGGAAGATGTAGAGATGCATTTGAAAGATAAGGCAAACACGACTGATTTAGTTTGCTGCTTGCAGAATTTGCAGATGTGTTTCCAAACTGAGGAGAGAGCAAGGAAACTATTGCTTAATGTGTCATCCTTATTGAAACCGGGGGGTTATTTTTTTGGTATTACTCCTGACTCATCTACAATATGGGCAAAGTACCAGAAGAATGTTGAAGCATACCACAATAGAAGTGGTGGCATGAAACCGAACATTGTCCCCAATTGCATTAGATCAGAGAACTACACGATTACCTTTGAAGTTGAGGAAGAGAAGTTTCCTATATTTGGAAAGAAATACCAACTGAAATTTGCTAATGATATCTCTCCTGAAAGTCATCACTTGGTTCATTTCCCAAGCTTTATCAGGTTAGCCAGAGAAGCTGGTCTTGAGTATGTGGAGATTCAAAACTTAACTGAATTTTACGATGACAACAGAGCACAATTTGCAGGCATGATAATGAATTCCTGTTCAAACCTTGTGGATCCTCGAGGAAGACTTCTTCCTCGATCATATGATGTATTAGGTTTATATACCACGTTTATATTCCAAAAGCCGGACCCTGATATTACTCCCCCGCTCATGACACCAGTGCTGCACGATGTAACGTACATTCAAGATGAGAGAGAGTGGCAAGTGCCAGTGACGACTATCTGGAGAGATGACGAAAAGACCGTACCAGTAGAGCCGCCTCCTGGGCTGGGAAAGATTAGTGAACAAAAAGGGATTTTGGGTCCAGGCCCTGCTGAGTTGCGTTTTTCCGAGGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

360

Amino Acids

40.89

Weight (kDa)

5.36

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	14 - 166	1.6e-07	Methyltransferase domain
Methyltransf_31	PF13847	33 - 167	4.4e-08	Methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	34 - 287	7.1e-37	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_25	PF13649	35 - 140	2.1e-07	Methyltransferase domain
Methyltransf_12	PF08242	40 - 142	2.3e-07	Methyltransferase domain
Methyltransf_11	PF08241	40 - 143	2e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52210 AT3G52210 AT3G52210
fragaria_vesca	FvH4_7g18320 FvH4_7g18320 FvH4_7g18320
malus_domestica	MD01G1099500.v1.1 MD07G1166400.v1.1 MD16G1171900.v1.1
prunus_persica	Prupe.2G205200_v2.0.a1 Prupe.2G205200_v2.0.a1
pyrus_communis	pycom01g12660 pycom07g16170
rosa_chinensis	RchiOBHm_Chr1g0362021
rosa_laevigata	RLG00000027679
rosa_multiflora	Rmu_sc0010614.1_g000007
rosa_roxburghii	Rroxscaffold_4G00294580
rosa_rugosa	Rorug01G0292700 Rorug01G0292800
rosa_samantha	Rh1AG303100 Rh1BG266300 Rh1CG284500 Rh1DG296300
rosa_wichuraiana	Rw1G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	795
AccBSI	CCGCTC	1 cut(s)	886
AccI	GTMKAC	2 cut(s)	32, 132
AccII	CGCG	1 cut(s)	14
AciI	CCGC	6 cut(s)	14, 26, 120, 123, 884, 995
AclWI	GGATC	2 cut(s)	785, 798
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	4 cut(s)	340, 614, 725, 769
AcyI	GRCGYC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	105
AfaI	GTAC	4 cut(s)	116, 467, 917, 984
AfiI	CCNNNNNNNGG	8 cut(s)	144, 235, 274, 364, 593, 862, 1001, 1007
AgsI	TTSAA	7 cut(s)	298, 409, 482, 566, 713, 780, 923
AjnI	CCWGG	2 cut(s)	1000, 1042
AluBI	AGCT	4 cut(s)	65, 262, 666, 689
AluI	AGCT	4 cut(s)	65, 262, 666, 689
Alw21I	GWGCWC	1 cut(s)	748
AlwI	GGATC	2 cut(s)	785, 798
AlwNI	CAGNNNCTG	1 cut(s)	1049
Ama87I	CYCGRG	1 cut(s)	795
AoxI	GGCC	2 cut(s)	163, 1045
ApeKI	GCWGC	3 cut(s)	65, 330, 901
ApoI	RAATTY	4 cut(s)	340, 614, 725, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspS9I	GGNCC	3 cut(s)	865, 1040, 1046
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	29, 64
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	865, 1040
BamHI	GGATCC	1 cut(s)	790
BbsI	GAAGAC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	3 cut(s)	52, 317, 888
BciT130I	CCWGG	2 cut(s)	1002, 1044
BcnI	CCSGG	1 cut(s)	414
BglI	GCCNNNNNGGC	1 cut(s)	1003
BisI	GCNGC	5 cut(s)	66, 121, 331, 902, 995
BlsI	GCNGC	5 cut(s)	67, 122, 332, 903, 996
Bme1390I	CCNGG	3 cut(s)	414, 1002, 1044
Bme18I	GGWCC	2 cut(s)	865, 1040
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	3 cut(s)	865, 1040, 1046
BmiI	GGNNCC	3 cut(s)	792, 867, 1041
BmrFI	CCNGG	3 cut(s)	414, 1002, 1044
BmsI	GCATC	2 cut(s)	142, 279
BpiI	GAAGAC	1 cut(s)	808
BpmI	CTGGAG	1 cut(s)	982
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	414
Bsa29I	ATCGAT	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	4 cut(s)	99, 413, 1001, 1068
Bsc4I	CCNNNNNNNGG	8 cut(s)	144, 235, 274, 364, 593, 862, 1001, 1007
Bse1I	ACTGG	3 cut(s)	896, 947, 986
BseBI	CCWGG	2 cut(s)	1002, 1044
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	99, 413, 1001, 1068
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	8 cut(s)	144, 235, 274, 364, 593, 862, 1001, 1007
BseMII	CTCAG	2 cut(s)	354, 1044
BseNI	ACTGG	3 cut(s)	896, 947, 986
BseRI	GAGGAG	2 cut(s)	141, 380
BseXI	GCAGC	3 cut(s)	52, 317, 888
BseYI	CCCAGC	1 cut(s)	1006
BsgI	GTGCAG	2 cut(s)	51, 887
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	165, 1047
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	795
BsiSI	CCGG	2 cut(s)	413, 863
BslFI	GGGAC	3 cut(s)	31, 161, 509
BslI	CCNNNNNNNGG	8 cut(s)	144, 235, 274, 364, 593, 862, 1001, 1007
BsmFI	GGGAC	3 cut(s)	31, 161, 509
BsnI	GGCC	2 cut(s)	165, 1047
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	3 cut(s)	539, 790, 815
BspACI	CCGC	6 cut(s)	14, 26, 120, 123, 884, 995
BspANI	GGCC	2 cut(s)	165, 1047
BspCNI	CTCAG	2 cut(s)	355, 1045
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	3 cut(s)	792, 867, 1041
BspPI	GGATC	2 cut(s)	785, 798
BsrBI	CCGCTC	1 cut(s)	886
BsrI	ACTGG	3 cut(s)	896, 947, 986
BssECI	CCNNGG	4 cut(s)	99, 413, 1001, 1068
BssMI	GATC	3 cut(s)	539, 790, 815
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	1002, 1044
Bst4CI	ACNGT	2 cut(s)	103, 982
Bst6I	CTCTTC	2 cut(s)	205, 570
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	3 cut(s)	65, 343, 752
BstC8I	GCNNGC	3 cut(s)	12, 335, 757
BstDEI	CTNAG	2 cut(s)	363, 1053
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	542, 793, 818
BstMBI	GATC	3 cut(s)	539, 790, 815
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 245, 343, 686, 752, 1003
BstNI	CCWGG	2 cut(s)	1002, 1044
BstSCI	CCNGG	3 cut(s)	412, 1000, 1042
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	52, 317, 888
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	165, 1047
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	398
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	243, 903, 954
Cac8I	GCNNGC	3 cut(s)	12, 335, 757
CaiI	CAGNNNCTG	1 cut(s)	1049
CciI	TCATGA	1 cut(s)	888
Cfr13I	GGNCC	3 cut(s)	865, 1040, 1046
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	4 cut(s)	115, 466, 916, 983
CspCI	CAANNNNNGTGG	4 cut(s)	481, 516, 768, 803
CviAII	CATG	4 cut(s)	274, 508, 760, 889
CviQI	GTAC	4 cut(s)	115, 466, 916, 983
DdeI	CTNAG	2 cut(s)	363, 1053
DpnI	GATC	3 cut(s)	541, 792, 817
DpnII	GATC	3 cut(s)	539, 790, 815
DraIII	CACNNNGTG	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	205, 570
EarI	CTCTTC	2 cut(s)	205, 570
EciI	GGCGGA	2 cut(s)	41, 138
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	865, 1040
Eco88I	CYCGRG	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	2 cut(s)	1000, 1042
EcoRV	GATATC	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	294
FaeI	CATG	4 cut(s)	277, 511, 763, 892
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	3 cut(s)	31, 161, 509
FatI	CATG	4 cut(s)	273, 507, 759, 888
FauI	CCCGC	2 cut(s)	7, 891
FauNDI	CATATG	1 cut(s)	820
FblI	GTMKAC	2 cut(s)	32, 132
Fnu4HI	GCNGC	5 cut(s)	66, 121, 331, 902, 995
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	5 cut(s)	66, 121, 331, 902, 995
GluI	GCNGC	5 cut(s)	66, 121, 331, 902, 995
GsaI	CCCAGC	1 cut(s)	1010
GsuI	CTGGAG	1 cut(s)	982
HaeIII	GGCC	2 cut(s)	165, 1047
HapII	CCGG	2 cut(s)	413, 863
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	277, 511, 763, 892
HincII	GTYRAC	2 cut(s)	33, 133
HindII	GTYRAC	2 cut(s)	33, 133
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	9 cut(s)	4, 29, 34, 45, 78, 129, 177, 443, 709
HpaII	CCGG	2 cut(s)	413, 863
HphI	GGTGA	2 cut(s)	29, 64
Hpy166II	GTNNAC	4 cut(s)	33, 88, 133, 1022
Hpy188I	TCNGA	3 cut(s)	176, 544, 1069
Hpy188III	TCNNGA	7 cut(s)	195, 440, 635, 695, 889, 923, 961
Hpy8I	GTNNAC	4 cut(s)	33, 88, 133, 1022
Hpy99I	CGWCG	3 cut(s)	137, 193, 196
HpyAV	CCTTC	2 cut(s)	16, 229
HpyCH4III	ACNGT	2 cut(s)	103, 982
HpyCH4IV	ACGT	2 cut(s)	845, 914
HpyCH4V	TGCA	9 cut(s)	10, 68, 273, 292, 337, 346, 534, 755, 904
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 245, 343, 686, 752, 1003
HpyF3I	CTNAG	2 cut(s)	363, 1053
HpySE526I	ACGT	2 cut(s)	845, 914
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	277, 511, 763, 892
Kzo9I	GATC	3 cut(s)	539, 790, 815
Lsp1109I	GCAGC	3 cut(s)	52, 317, 888
LweI	GCATC	2 cut(s)	142, 279
MaeII	ACGT	2 cut(s)	845, 914
MaeIII	GTNAC	2 cut(s)	910, 949
MalI	GATC	3 cut(s)	541, 792, 817
MbiI	CCGCTC	1 cut(s)	886
MboI	GATC	3 cut(s)	539, 790, 815
MboII	GAAGA	7 cut(s)	73, 222, 290, 484, 587, 800, 813
MfeI	CAATTG	1 cut(s)	529
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	7 cut(s)	110, 340, 529, 614, 725, 749, 769
MlyI	GAGTC	6 cut(s)	13, 28, 38, 39, 138, 437
MnlI	CCTC	9 cut(s)	119, 225, 358, 565, 791, 804, 822, 1008, 1063
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	2 cut(s)	390, 719
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	2 cut(s)	413, 863
MspR9I	CCNGG	3 cut(s)	414, 1002, 1044
MunI	CAATTG	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	1002, 1044
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	6 cut(s)	65, 245, 343, 686, 752, 1003
NciI	CCSGG	1 cut(s)	414
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	3 cut(s)	539, 790, 815
NlaIII	CATG	4 cut(s)	277, 511, 763, 892
NlaIV	GGNNCC	3 cut(s)	792, 867, 1041
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	949
NsiI	ATGCAT	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	795
PagI	TCATGA	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	78, 177, 709
PkrI	GCNGC	5 cut(s)	67, 122, 332, 903, 996
PleI	GAGTC	6 cut(s)	12, 28, 37, 39, 137, 437
PpsI	GAGTC	6 cut(s)	12, 28, 37, 39, 137, 437
Psp6I	CCWGG	2 cut(s)	1000, 1042
PspFI	CCCAGC	1 cut(s)	1006
PspGI	CCWGG	2 cut(s)	1000, 1042
PspN4I	GGNNCC	3 cut(s)	792, 867, 1041
PspPI	GGNCC	3 cut(s)	865, 1040, 1046
PspXI	VCTCGAGB	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	1049
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	4 cut(s)	116, 467, 917, 984
RsaNI	GTAC	4 cut(s)	115, 466, 916, 983
RseI	CAYNNNNRTG	1 cut(s)	764
SalI	GTCGAC	2 cut(s)	31, 131
SaqAI	TTAA	2 cut(s)	390, 719
SatI	GCNGC	5 cut(s)	66, 121, 331, 902, 995
Sau3AI	GATC	3 cut(s)	539, 790, 815
Sau96I	GGNCC	3 cut(s)	865, 1040, 1046
SchI	GAGTC	6 cut(s)	13, 28, 38, 39, 138, 437
ScrFI	CCNGG	3 cut(s)	414, 1002, 1044
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	142, 279
Sfr274I	CTCGAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	865, 1040
SlaI	CTCGAG	1 cut(s)	795
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	695, 795
SmoI	CTYRAG	2 cut(s)	695, 795
Sse9I	AATT	7 cut(s)	110, 340, 529, 614, 725, 749, 769
SsiI	CCGC	6 cut(s)	14, 26, 120, 123, 884, 995
StyD4I	CCNGG	3 cut(s)	412, 1000, 1042
TaaI	ACNGT	2 cut(s)	103, 982
TaiI	ACGT	2 cut(s)	848, 917
TaqI	TCGA	5 cut(s)	32, 132, 180, 796, 814
TasI	AATT	7 cut(s)	110, 340, 529, 614, 725, 749, 769
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	2 cut(s)	123, 997
TfiI	GAWTC	3 cut(s)	78, 177, 709
Tru1I	TTAA	2 cut(s)	390, 719
Tru9I	TTAA	2 cut(s)	390, 719
TscAI	CASTG	3 cut(s)	250, 903, 954
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	3 cut(s)	65, 330, 901
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	3 cut(s)	524, 644, 782
TspRI	CASTG	3 cut(s)	250, 903, 954
VpaK11BI	GGWCC	2 cut(s)	865, 1040
XapI	RAATTY	4 cut(s)	340, 614, 725, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	795
XmiI	GTMKAC	2 cut(s)	32, 132
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.