Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009519

Physical Location & Seq

Genomic Coordinates Reverse (-)

22902585 .. 22909981

Gene Structure 7397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGTGCCCCCCTCTCTCTCCCTCTCCAACTTCCTTGCTCAATCAACCAACTCACACTCTACTTCTACCCAGTCTTCTCTCTCCGACTGCCTCCCTCCCACGCACAGACGCTGAGTTGAAAATTCAGTTGCAGAAAATCAAGGGCCAGCCGCGGAGCAACGAAACCCGATCTCCCCGCTCACCCGGACCCGATGAAAATGAAATTCGCCGCCAAAGTCTCGCTCAACCCGCTCGGCGCCTACGAGCACAAGAGGTTAGGGATGCTTATGGATTTGCTGTGAGGCCTCAGCATGTACAACGATACCGAGAATATGCCAGTATCTACAAGGAAGAGGAGGAGGAAAGATCAGAAAGGTGGAAGTCTTTCCTGGAACTACAAGCAGAGTCGACTGAATTGCCAGTAGATGGATTATCTAAGGGACAAGATAACTCAGTTGTCGAAGCCTCAGCGAAAGAACTAGACTCTAATTCAGAAAAGGGTGTTGATGGCGATGATTTAAGTGACCAGAAGACAGGTTCTGATTCTCCAACCAAAAGCGATAATGACAAGGAGGAACTGGCAGCTAACGACAAAAAAGCTCATGGCATCCAAATATGGAATGAGATTAGACCATCCCTTCATGCCATTGAGAATCTGATGAGTATTCGTATAAAGAAGAAGAAGAACAATTTATCAAAGCATGAGCAGGACACAGGAACTGGGAAGCCACTTACTTCTATTGAAGAGGCTAGATCCCCAAAAGGAGCATCTGAGGAGGATTCCGAGGATGAGTTCTATGATGTGGAGAGGTCAGACCCAGTTCAAGATGTCCCTTCGAGTGACAGTCTGAGTGCATCTGCAACTGGTGCTGTTTCTGACACAGTTGATTCAGAATCTTTATTTCCTTGGAAGGAGGAATTGGAGGTTCTTGTTCGTGGGGGAGTGCCAATGGCTCTCAGGGGAGAGCTTTGGCAAGCCTTTGTGGGTGTGAAGGCACGGCGCGCGGATAACTATTACCAGGATCTGCTAGCTTCTGAAACTAATGCTGGTGGTGATGTGGAAAAACATAGCTCGGAATCAGACAGTGATATCAAATTGTCAACAACAGATCCTGTATCTGTACCTGAAAAATGGAAAGGGCAGATTGAGAAGGATCTACCTCGAACATTTCCAGGTCACCCTGCTCTTGATGAAGATGGTAGAAATGCTTTGAGGCGTTTGCTTACCGCATATGCGCGACACAATCCCACTGTTGGGTACTGTCAGGCCATGAATTTTTTTGCTGGCTTATTACTACTTCTCATGCCTGAAGAAAATGCCTTTTGGGCTTTAATGGGGCTCTTAGATGATTATTTTGATGGCTATTACTCCGAGGAAATGATAGAATCTCAGGTGGATCAACTGGTTTTTGAGGAGTTGGTGCATGAGAGATTTCCTAAATTGGTCAACCATCTAGGTTACCTGGGAGTGCAGGTGGCATGGGTTACCGGGCCATGGTTCCTTACCATTTTCATGAACATGCTTCCATGGGAAAGTGTTCTTCGGGTCTGGGACGTTCTTCTTTTTGAGGGGAACCGCGTGATGCTGTTCAGAACAGCACTTGCCTTGATGGAGTTATATGGCCCTGCACTGGTTACTACTAAGGATGCTGGAGATGCAGTCACTCTTCTGCAATCGCTAGCTGGCTCTACATTCGATAGCAGTCAACTGGTATTGACAGCTTGCATGGGTTACCAAAATGTAAATGAAACTAGATTACAAGAGCTGAGAAATAAACATCGGCCAGCTGTAATTGTCGCTATCGAGGAAAGATCGAAGGGACTTCAGGCTTTGAAAGATTCTCAGGGTCTAGCATCTAAGCTATATAATTTTAAGCAAGACCCTAAATCATTGATAATAGAGACAAAGAAAGCAGAGCTGTTGGTCAATTCACATACAAATGGTGATTTATCTCATTCAGAGTCTGGGTCCTCTAATGCAGATGAAATTCTTATTAGCTTGACTGGAAATGGGGAATTAGATTCCGTTCCAGATCTTCACGAACAGGTGGTATGGTTGAAGGTTGAATTATGCAAGCTGCTGGAGGATAAAAGATCTGCTGAACTCAGAGCTGAGGAGCTGGAGACAGCATTGATGGAGATGGTCAAGCAGGATAATCGTCGGCAACTGAGTGCCAGGGTTGAGCAATTAGAGCAAGAGGTTGCTGAGCTTCGCCGAGCCCTTTCTGATAAGCAGGAACAGGAGAGCGTCATGCTCCAGGTCTTAATGCGAGTAGAGCAAGAGCAGAAACTAACAGAAGATGCTCGCAGATTTTCTGAGCAAGATGCAGAAGCACAGAGATTTGCTGCTCAAGTGCTTCAGGAGAAGTATGAGGAGGCCACTGCTGCGCTTGCGGAAATGGAGAAGAGAGCTGTTATGGCAGAATCAATGTTGGAGGCTACTTTGCAATACCAATCTGGTCAAGTGAAAACACAATCTCCACGATCTGTATCTTTACCAGTACAAAGCAATCAAGAGCAGCTGACACAAGAAATTCCTGCTAGAAAGATTAGTTTGCTAGGTCGACCATTTGGCCTTGGCTGGCGCGACCGGAACAAGGGAAAACCTGCTAACAGTGAGGAGCCAAATGATGGCAAGCCTACCAGTGAAGGACAGAGCCCCACTGCGGAAGCAGAAGTAAAAGAGACGAATGGCGTTAAAGCGGAAGATAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

899

Amino Acids

100.53

Weight (kDa)

4.91

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	311 - 535	8.8e-52	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	396 - 554	1.5e-26	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55020 AT3G55020 AT3G55020
fragaria_vesca	FvH4_7g20590 FvH4_7g20590
malus_domestica	MD01G1114800.v1.1 MD07G1182800.v1.1
prunus_persica	Prupe.2G221500_v2.0.a1 Prupe.2G221500_v2.0.a1
pyrus_communis	pycom01g14370 pycom07g17540
rosa_chinensis	RchiOBHm_Chr1g0364631
rosa_laevigata	RLG00000027471
rosa_multiflora	Rmu_ssc0000282.1_g000019
rosa_roxburghii	Rroxscaffold_4G00291790 Rroxscaffold_4G00292210
rosa_rugosa	Rorug01G0317200
rosa_samantha	Rh1AG326200 Rh1BG287400 Rh1CG304200 Rh1DG319100
rosa_wichuraiana	Rw1G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1441
Acc36I	ACCTGC	2 cut(s)	1441, 2593
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	2 cut(s)	404, 2609
AccBSI	CCGCTC	2 cut(s)	177, 230
AccI	GTMKAC	2 cut(s)	386, 2542
AccII	CGCG	6 cut(s)	151, 981, 983, 1216, 1557, 2565
AclWI	GGATC	5 cut(s)	726, 1008, 1082, 1140, 1383
AcoI	YGGCCR	1 cut(s)	1760
AcsI	RAATTY	5 cut(s)	120, 201, 1252, 1965, 2511
AcuI	CTGAAG	3 cut(s)	1308, 1787, 2321
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	4 cut(s)	294, 1101, 1238, 2481
AfiI	CCNNNNNNNGG	8 cut(s)	404, 1232, 1233, 1473, 1609, 2575, 2609, 2644
AgsI	TTSAA	6 cut(s)	118, 722, 803, 1813, 2038, 2045
AjnI	CCWGG	6 cut(s)	366, 996, 1150, 1440, 2153, 2235
AjuI	GAANNNNNNNTTGG	2 cut(s)	881, 913
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	4 cut(s)	221, 1874, 2096, 2657
AlwI	GGATC	5 cut(s)	726, 1008, 1082, 1140, 1383
AlwNI	CAGNNNCTG	6 cut(s)	110, 518, 698, 1003, 1091, 1943
AoxI	GGCC	8 cut(s)	142, 281, 1245, 1469, 1600, 1760, 2355, 2551
ApeKI	GCWGC	5 cut(s)	560, 2056, 2324, 2363, 2497
ApoI	RAATTY	5 cut(s)	120, 201, 1252, 1965, 2511
Asp700I	GAANNNNTTC	2 cut(s)	362, 1515
AspLEI	GCGC	6 cut(s)	237, 981, 983, 1216, 2368, 2565
AspS9I	GGNCC	5 cut(s)	142, 185, 1469, 1601, 1947
AsuC2I	CCSGG	2 cut(s)	183, 1468
AsuHPI	GGTGA	4 cut(s)	171, 1043, 1148, 1934
AsuNHI	GCTAGC	2 cut(s)	1006, 1657
AvaII	GGWCC	2 cut(s)	185, 1947
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	3 cut(s)	1320, 2200, 2639
BbsI	GAAGAC	2 cut(s)	65, 515
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	3 cut(s)	285, 445, 2091
BbvI	GCAGC	5 cut(s)	572, 2043, 2311, 2350, 2509
BceAI	ACGGC	1 cut(s)	992
BcgI	CGANNNNNNTGC	4 cut(s)	376, 410, 2117, 2151
BciT130I	CCWGG	6 cut(s)	368, 998, 1152, 1442, 2155, 2237
BcnI	CCSGG	2 cut(s)	183, 1468
BcoDI	GTCTC	4 cut(s)	221, 1874, 2096, 2657
BfaI	CTAG	9 cut(s)	458, 729, 1007, 1433, 1658, 1731, 1829, 2520, 2537
BfoI	RGCGCY	1 cut(s)	238
BfuAI	ACCTGC	2 cut(s)	1441, 2593
BglI	GCCNNNNNGGC	1 cut(s)	1304
BglII	AGATCT	2 cut(s)	2011, 2072
BisI	GCNGC	7 cut(s)	149, 208, 561, 2057, 2325, 2364, 2498
BlpI	GCTNAGC	1 cut(s)	2184
BlsI	GCNGC	7 cut(s)	150, 209, 562, 2058, 2326, 2365, 2499
Bme1390I	CCNGG	8 cut(s)	183, 368, 998, 1152, 1442, 1468, 2155, 2237
Bme18I	GGWCC	2 cut(s)	185, 1947
BmgT120I	GGNCC	5 cut(s)	142, 185, 1469, 1601, 1947
BmiI	GGNNCC	6 cut(s)	187, 236, 1478, 1553, 1948, 2601
BmrFI	CCNGG	8 cut(s)	183, 368, 998, 1152, 1442, 1468, 2155, 2237
BmrI	ACTGGG	3 cut(s)	63, 708, 791
BmtI	GCTAGC	2 cut(s)	1010, 1661
BmuI	ACTGGG	3 cut(s)	63, 708, 791
BpiI	GAAGAC	2 cut(s)	65, 515
BpmI	CTGGAG	4 cut(s)	1650, 2081, 2120, 2219
Bpu10I	CCTNAGC	3 cut(s)	285, 445, 2091
Bpu1102I	GCTNAGC	1 cut(s)	2184
BpuEI	CTTGAG	1 cut(s)	2313
BpuMI	CCSGG	2 cut(s)	183, 1468
BsaBI	GATNNNNATC	1 cut(s)	2467
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	9 cut(s)	149, 762, 884, 1350, 1441, 1472, 1505, 2154, 2554
BsaWI	WCCGGW	1 cut(s)	2568
BsaXI	ACNNNNNCTCC	8 cut(s)	154, 184, 1437, 1467, 1623, 1653, 2440, 2470
Bsc4I	CCNNNNNNNGG	8 cut(s)	404, 1232, 1233, 1473, 1609, 2575, 2609, 2644
Bse8I	GATNNNNATC	1 cut(s)	2467
BseBI	CCWGG	6 cut(s)	368, 998, 1152, 1442, 2155, 2237
BseDI	CCNNGG	9 cut(s)	149, 762, 884, 1350, 1441, 1472, 1505, 2154, 2554
BseGI	GGATG	5 cut(s)	265, 585, 611, 772, 1630
BseJI	GATNNNNATC	1 cut(s)	2467
BseLI	CCNNNNNNNGG	8 cut(s)	404, 1232, 1233, 1473, 1609, 2575, 2609, 2644
BsePI	GCGCGC	1 cut(s)	979
BseRI	GAGGAG	7 cut(s)	347, 350, 767, 1406, 2108, 2366, 2612
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	572, 2043, 2311, 2350, 2509
BsgI	GTGCAG	2 cut(s)	1469, 1590
Bsh1236I	CGCG	6 cut(s)	151, 981, 983, 1216, 1557, 2565
Bsh1285I	CGRYCG	1 cut(s)	2569
BshFI	GGCC	8 cut(s)	144, 283, 1247, 1471, 1602, 1762, 2357, 2553
BshNI	GGYRCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	2569
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	183, 1467, 2569
BslFI	GGGAC	4 cut(s)	432, 794, 1544, 1812
BslI	CCNNNNNNNGG	8 cut(s)	404, 1232, 1233, 1473, 1609, 2575, 2609, 2644
BsmAI	GTCTC	4 cut(s)	221, 1874, 2096, 2657
BsmBI	CGTCTC	1 cut(s)	2657
BsmFI	GGGAC	4 cut(s)	432, 794, 1544, 1812
BsnI	GGCC	8 cut(s)	144, 283, 1247, 1471, 1602, 1762, 2357, 2553
Bsp1286I	GDGCHC	5 cut(s)	8, 247, 1320, 2200, 2639
Bsp1407I	TGTACA	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	2184
Bsp19I	CCATGG	2 cut(s)	1472, 1505
BspANI	GGCC	8 cut(s)	144, 283, 1247, 1471, 1602, 1762, 2357, 2553
BspFNI	CGCG	6 cut(s)	151, 981, 983, 1216, 1557, 2565
BspHI	TCATGA	1 cut(s)	1491
BspLI	GGNNCC	6 cut(s)	187, 236, 1478, 1553, 1948, 2601
BspMI	ACCTGC	2 cut(s)	1441, 2593
BspOI	GCTAGC	2 cut(s)	1010, 1661
BspPI	GGATC	5 cut(s)	726, 1008, 1082, 1140, 1383
BspT107I	GGYRCC	1 cut(s)	234
BsrBI	CCGCTC	2 cut(s)	177, 230
BsrGI	TGTACA	1 cut(s)	292
BssECI	CCNNGG	9 cut(s)	149, 762, 884, 1350, 1441, 1472, 1505, 2154, 2554
BssHII	GCGCGC	1 cut(s)	979
BssNI	GRCGYC	1 cut(s)	235
BssT1I	CCWWGG	4 cut(s)	884, 1472, 1505, 2554
Bst2UI	CCWGG	6 cut(s)	368, 998, 1152, 1442, 2155, 2237
Bst4CI	ACNGT	6 cut(s)	824, 862, 1064, 1231, 1241, 2594
Bst6I	CTCTTC	4 cut(s)	324, 717, 1650, 2378
BstACI	GRCGYC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstAUI	TGTACA	1 cut(s)	292
BstDSI	CCRYGG	3 cut(s)	149, 1472, 1505
BstEII	GGTNACC	4 cut(s)	1154, 1436, 1462, 1709
BstF5I	GGATG	5 cut(s)	265, 585, 611, 772, 1630
BstFNI	CGCG	6 cut(s)	151, 981, 983, 1216, 1557, 2565
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	6 cut(s)	237, 981, 983, 1216, 2368, 2565
BstMAI	GTCTC	4 cut(s)	221, 1874, 2096, 2657
BstMCI	CGRYCG	1 cut(s)	2569
BstNI	CCWGG	6 cut(s)	368, 998, 1152, 1442, 2155, 2237
BstNSI	RCATGY	2 cut(s)	293, 1501
BstPI	GGTNACC	4 cut(s)	1154, 1436, 1462, 1709
BstSCI	CCNGG	8 cut(s)	181, 366, 996, 1150, 1440, 1466, 2153, 2235
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	6 cut(s)	151, 981, 983, 1216, 1557, 2565
BstV1I	GCAGC	5 cut(s)	572, 2043, 2311, 2350, 2509
BstV2I	GAAGAC	2 cut(s)	65, 515
BstX2I	RGATCY	6 cut(s)	731, 1000, 1087, 1132, 2011, 2072
BstYI	RGATCY	6 cut(s)	731, 1000, 1087, 1132, 2011, 2072
BsuRI	GGCC	8 cut(s)	144, 283, 1247, 1471, 1602, 1762, 2357, 2553
BtgI	CCRYGG	3 cut(s)	149, 1472, 1505
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	5 cut(s)	265, 585, 611, 772, 1630
BtsI	GCAGTG	2 cut(s)	2358, 2640
BtsIMutI	CAGTG	7 cut(s)	1069, 1227, 1607, 2358, 2599, 2629, 2640
BveI	ACCTGC	2 cut(s)	1441, 2593
CaiI	CAGNNNCTG	6 cut(s)	110, 518, 698, 1003, 1091, 1943
CciI	TCATGA	1 cut(s)	1491
CfoI	GCGC	6 cut(s)	237, 981, 983, 1216, 2368, 2565
Cfr13I	GGNCC	5 cut(s)	142, 185, 1469, 1601, 1947
Cfr42I	CCGCGG	1 cut(s)	152
CseI	GACGC	2 cut(s)	116, 2215
Csp6I	GTAC	4 cut(s)	293, 1100, 1237, 2480
CviQI	GTAC	4 cut(s)	293, 1100, 1237, 2480
DinI	GGCGCC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	1760
Eam1104I	CTCTTC	4 cut(s)	324, 717, 1650, 2378
EarI	CTCTTC	4 cut(s)	324, 717, 1650, 2378
Eco130I	CCWWGG	4 cut(s)	884, 1472, 1505, 2554
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	3 cut(s)	1320, 2200, 2639
Eco32I	GATATC	1 cut(s)	1069
Eco47I	GGWCC	2 cut(s)	185, 1947
Eco57I	CTGAAG	3 cut(s)	1308, 1787, 2321
Eco91I	GGTNACC	4 cut(s)	1154, 1436, 1462, 1709
EcoO109I	RGGNCCY	1 cut(s)	1947
EcoO65I	GGTNACC	4 cut(s)	1154, 1436, 1462, 1709
EcoRII	CCWGG	6 cut(s)	366, 996, 1150, 1440, 2153, 2235
EcoRV	GATATC	1 cut(s)	1069
EcoT14I	CCWWGG	4 cut(s)	884, 1472, 1505, 2554
EcoT38I	GRGCYC	3 cut(s)	1320, 2200, 2639
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
ErhI	CCWWGG	4 cut(s)	884, 1472, 1505, 2554
Esp3I	CGTCTC	1 cut(s)	2657
FaqI	GGGAC	4 cut(s)	432, 794, 1544, 1812
FauI	CCCGC	2 cut(s)	182, 235
FauNDI	CATATG	1 cut(s)	1210
FblI	GTMKAC	2 cut(s)	386, 2542
Fnu4HI	GCNGC	7 cut(s)	149, 208, 561, 2057, 2325, 2364, 2498
FokI	GGATG	5 cut(s)	272, 572, 598, 779, 1637
FriOI	GRGCYC	3 cut(s)	1320, 2200, 2639
Fsp4HI	GCNGC	7 cut(s)	149, 208, 561, 2057, 2325, 2364, 2498
FspBI	CTAG	9 cut(s)	458, 729, 1007, 1433, 1658, 1731, 1829, 2520, 2537
GlaI	GCGC	6 cut(s)	236, 980, 982, 1215, 2367, 2564
GluI	GCNGC	7 cut(s)	149, 208, 561, 2057, 2325, 2364, 2498
GsuI	CTGGAG	4 cut(s)	1650, 2081, 2120, 2219
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	8 cut(s)	144, 283, 1247, 1471, 1602, 1762, 2357, 2553
HapII	CCGG	3 cut(s)	183, 1467, 2569
HgaI	GACGC	2 cut(s)	116, 2215
HhaI	GCGC	6 cut(s)	237, 981, 983, 1216, 2368, 2565
Hin1I	GRCGYC	1 cut(s)	235
Hin6I	GCGC	6 cut(s)	235, 979, 981, 1214, 2366, 2563
HinP1I	GCGC	6 cut(s)	235, 979, 981, 1214, 2366, 2563
HincII	GTYRAC	5 cut(s)	387, 1080, 1426, 1685, 2543
HindII	GTYRAC	5 cut(s)	387, 1080, 1426, 1685, 2543
HpaII	CCGG	3 cut(s)	183, 1467, 2569
HphI	GGTGA	4 cut(s)	171, 1043, 1148, 1934
Hpy166II	GTNNAC	5 cut(s)	387, 1080, 1426, 1685, 2543
Hpy188III	TCNNGA	7 cut(s)	803, 1166, 1492, 2009, 2018, 2339, 2492
Hpy8I	GTNNAC	5 cut(s)	387, 1080, 1426, 1685, 2543
Hpy99I	CGWCG	1 cut(s)	2142
HpyAV	CCTTC	8 cut(s)	626, 822, 883, 964, 1123, 1789, 2032, 2621
HpyCH4III	ACNGT	6 cut(s)	824, 862, 1064, 1231, 1241, 2594
HpyCH4IV	ACGT	1 cut(s)	1533
HpySE526I	ACGT	1 cut(s)	1533
Hsp92I	GRCGYC	1 cut(s)	235
HspAI	GCGC	6 cut(s)	235, 979, 981, 1214, 2366, 2563
KasI	GGCGCC	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	152
LmnI	GCTCC	5 cut(s)	153, 743, 2095, 2238, 2599
Lsp1109I	GCAGC	5 cut(s)	572, 2043, 2311, 2350, 2509
MaeI	CTAG	9 cut(s)	458, 729, 1007, 1433, 1658, 1731, 1829, 2520, 2537
MaeII	ACGT	1 cut(s)	1533
MaeIII	GTNAC	8 cut(s)	500, 818, 1154, 1436, 1462, 1612, 1639, 1709
MbiI	CCGCTC	2 cut(s)	177, 230
MflI	RGATCY	6 cut(s)	731, 1000, 1087, 1132, 2011, 2072
MhlI	GDGCHC	5 cut(s)	8, 247, 1320, 2200, 2639
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	3 cut(s)	392, 455, 1949
MmeI	TCCRAC	4 cut(s)	50, 107, 551, 2391
MroXI	GAANNNNTTC	2 cut(s)	362, 1515
MseI	TTAA	5 cut(s)	497, 1310, 1851, 2243, 2676
MslI	CAYNNNNRTG	3 cut(s)	1490, 1496, 1917
MspA1I	CMGCKG	3 cut(s)	151, 1766, 2500
MspI	CCGG	3 cut(s)	183, 1467, 2569
MspR9I	CCNGG	8 cut(s)	183, 368, 998, 1152, 1442, 1468, 2155, 2237
MvaI	CCWGG	6 cut(s)	368, 998, 1152, 1442, 2155, 2237
MvnI	CGCG	6 cut(s)	151, 981, 983, 1216, 1557, 2565
NarI	GGCGCC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	183, 1468
NcoI	CCATGG	2 cut(s)	1472, 1505
NdeI	CATATG	1 cut(s)	1210
NheI	GCTAGC	2 cut(s)	1006, 1657
NlaIV	GGNNCC	6 cut(s)	187, 236, 1478, 1553, 1948, 2601
NmeAIII	GCCGAG	2 cut(s)	211, 2219
NmuCI	GTSAC	4 cut(s)	500, 818, 1154, 1639
NspI	RCATGY	2 cut(s)	293, 1501
PagI	TCATGA	1 cut(s)	1491
PaqCI	CACCTGC	1 cut(s)	1441
PauI	GCGCGC	1 cut(s)	979
PceI	AGGCCT	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PdmI	GAANNNNTTC	2 cut(s)	362, 1515
PflMI	CCANNNNNTGG	2 cut(s)	404, 2609
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	7 cut(s)	150, 209, 562, 2058, 2326, 2365, 2499
PleI	GAGTC	3 cut(s)	391, 455, 1948
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	3 cut(s)	391, 455, 1948
PpuMI	RGGWCCY	1 cut(s)	1947
Psp5II	RGGWCCY	1 cut(s)	1947
Psp6I	CCWGG	6 cut(s)	366, 996, 1150, 1440, 2153, 2235
PspEI	GGTNACC	4 cut(s)	1154, 1436, 1462, 1709
PspGI	CCWGG	6 cut(s)	366, 996, 1150, 1440, 2153, 2235
PspN4I	GGNNCC	6 cut(s)	187, 236, 1478, 1553, 1948, 2601
PspPI	GGNCC	5 cut(s)	142, 185, 1469, 1601, 1947
PspPPI	RGGWCCY	1 cut(s)	1947
PstNI	CAGNNNCTG	6 cut(s)	110, 518, 698, 1003, 1091, 1943
PsuI	RGATCY	6 cut(s)	731, 1000, 1087, 1132, 2011, 2072
PteI	GCGCGC	1 cut(s)	979
PvuII	CAGCTG	2 cut(s)	1766, 2500
RsaI	GTAC	4 cut(s)	294, 1101, 1238, 2481
RsaNI	GTAC	4 cut(s)	293, 1100, 1237, 2480
RseI	CAYNNNNRTG	3 cut(s)	1490, 1496, 1917
SacII	CCGCGG	1 cut(s)	152
SalI	GTCGAC	2 cut(s)	385, 2541
SaqAI	TTAA	5 cut(s)	497, 1310, 1851, 2243, 2676
SatI	GCNGC	7 cut(s)	149, 208, 561, 2057, 2325, 2364, 2498
Sau96I	GGNCC	5 cut(s)	142, 185, 1469, 1601, 1947
SchI	GAGTC	3 cut(s)	392, 455, 1949
ScrFI	CCNGG	8 cut(s)	183, 368, 998, 1152, 1442, 1468, 2155, 2237
SduI	GDGCHC	5 cut(s)	8, 247, 1320, 2200, 2639
SfoI	GGCGCC	1 cut(s)	236
Sfr303I	CCGCGG	1 cut(s)	152
SgrBI	CCGCGG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	185, 1947
SmiMI	CAYNNNNRTG	3 cut(s)	1490, 1496, 1917
SmlI	CTYRAG	1 cut(s)	2328
SmoI	CTYRAG	1 cut(s)	2328
SseBI	AGGCCT	1 cut(s)	283
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	9 cut(s)	458, 729, 1007, 1433, 1658, 1731, 1829, 2520, 2537
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	8 cut(s)	181, 366, 996, 1150, 1440, 1466, 2153, 2235
StyI	CCWWGG	4 cut(s)	884, 1472, 1505, 2554
TaaI	ACNGT	6 cut(s)	824, 862, 1064, 1231, 1241, 2594
TaiI	ACGT	1 cut(s)	1536
TaqI	TCGA	8 cut(s)	386, 438, 815, 1141, 1674, 1782, 1793, 2542
TatI	WGTACW	2 cut(s)	292, 2479
TauI	GCSGC	2 cut(s)	151, 210
Tru1I	TTAA	5 cut(s)	497, 1310, 1851, 2243, 2676
Tru9I	TTAA	5 cut(s)	497, 1310, 1851, 2243, 2676
TscAI	CASTG	7 cut(s)	1069, 1234, 1614, 2365, 2599, 2629, 2647
TseFI	GTSAC	4 cut(s)	500, 818, 1154, 1639
TseI	GCWGC	5 cut(s)	560, 2056, 2324, 2363, 2497
Tsp45I	GTSAC	4 cut(s)	500, 818, 1154, 1639
TspDTI	ATGAA	9 cut(s)	207, 213, 608, 1185, 1265, 1480, 1508, 1740, 1977
TspGWI	ACGGA	1 cut(s)	1993
TspRI	CASTG	7 cut(s)	1069, 1234, 1614, 2365, 2599, 2629, 2647
Van91I	CCANNNNNTGG	2 cut(s)	404, 2609
VpaK11BI	GGWCC	2 cut(s)	185, 1947
XapI	RAATTY	5 cut(s)	120, 201, 1252, 1965, 2511
XceI	RCATGY	2 cut(s)	293, 1501
XmiI	GTMKAC	2 cut(s)	386, 2542
XmnI	GAANNNNTTC	2 cut(s)	362, 1515
XspI	CTAG	9 cut(s)	458, 729, 1007, 1433, 1658, 1731, 1829, 2520, 2537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.