Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009519

Physical Location & Seq

Genomic Coordinates Reverse (-)

43524661 .. 43526728

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0317200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCGTTGATCCCCAGAACCACACTCACACTCACACTCCCCAGAACACTCCTCGCCCTTCGATCCTTCTCCTGCAAAATGTCATCCGACCCGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTAAGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTGTTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCACAATCCGTGAGGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCAATATGTATATATGTATAATGCCATAGCAGGACATAAGTTAGAAGCTGCTATTTATCGATATTACTGGCAAAGTAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

218

Amino Acids

23.92

Weight (kDa)

6.84

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55020 AT3G55020 AT3G55020
fragaria_vesca	FvH4_7g20590 FvH4_7g20590
malus_domestica	MD01G1114800.v1.1 MD07G1182800.v1.1
prunus_persica	Prupe.2G221500_v2.0.a1 Prupe.2G221500_v2.0.a1
pyrus_communis	pycom01g14370 pycom07g17540
rosa_chinensis	RchiOBHm_Chr1g0364631
rosa_laevigata	RLG00000027471
rosa_multiflora	Rmu_ssc0000282.1_g000019
rosa_roxburghii	Rroxscaffold_4G00291790 Rroxscaffold_4G00292210
rosa_rugosa	Rorug01G0317200
rosa_samantha	Rh1AG326200 Rh1BG287400 Rh1CG304200 Rh1DG319100
rosa_wichuraiana	Rw1G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AccII	CGCG	1 cut(s)	375
AciI	CCGC	4 cut(s)	92, 135, 159, 375
AclWI	GGATC	3 cut(s)	4, 57, 473
AcuI	CTGAAG	2 cut(s)	245, 329
AfaI	GTAC	1 cut(s)	453
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	389, 620, 651
AluI	AGCT	3 cut(s)	389, 620, 651
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	4, 57, 473
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	121
Aor51HI	AGCGCT	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	620
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	521
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	544
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	3 cut(s)	135, 159, 621
BlsI	GCNGC	3 cut(s)	136, 160, 622
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	354, 523
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	2 cut(s)	175, 255
BmuI	ACTGGG	2 cut(s)	175, 255
BpmI	CTGGAG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	631
BsaI	GGTCTC	1 cut(s)	544
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	4 cut(s)	181, 250, 477, 644
BseBI	CCWGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	631
BseGI	GGATG	2 cut(s)	83, 502
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	4 cut(s)	181, 250, 477, 644
BseRI	GAGGAG	3 cut(s)	41, 163, 166
BseXI	GCAGC	1 cut(s)	607
Bsh1236I	CGCG	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	9, 62, 150, 465
BspACI	CCGC	4 cut(s)	92, 135, 159, 375
BspDI	ATCGAT	1 cut(s)	631
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	354, 523
BspPI	GGATC	3 cut(s)	4, 57, 473
BspT107I	GGYRCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	4 cut(s)	181, 250, 477, 644
BssAI	RCCGGY	1 cut(s)	379
BssMI	GATC	4 cut(s)	9, 62, 150, 465
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	99, 263
BstC8I	GCNNGC	2 cut(s)	373, 483
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	83, 502
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	4 cut(s)	12, 65, 153, 468
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	4 cut(s)	9, 62, 150, 465
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	631
BsuTUI	ATCGAT	1 cut(s)	631
BtsCI	GGATG	2 cut(s)	83, 502
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	373, 483
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	631
CpoI	CGGWCCG	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	452
CspI	CGGWCCG	1 cut(s)	377
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	8 cut(s)	142, 223, 272, 383, 389, 422, 620, 651
CviKI_1	RGCY	8 cut(s)	142, 223, 272, 383, 389, 422, 620, 651
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	4 cut(s)	11, 64, 152, 467
DpnII	GATC	4 cut(s)	9, 62, 150, 465
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	245, 329
Eco88I	CYCGRG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	235
FalI	AAGNNNNNCTT	1 cut(s)	637
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	135, 159, 621
FokI	GGATG	2 cut(s)	70, 509
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	135, 159, 621
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	135, 159, 621
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	102, 128
HindII	GTYRAC	2 cut(s)	102, 128
HinfI	GANTC	5 cut(s)	103, 124, 200, 250, 407
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	2 cut(s)	102, 128
Hpy188I	TCNGA	5 cut(s)	88, 276, 294, 309, 412
Hpy188III	TCNNGA	4 cut(s)	121, 148, 187, 654
Hpy8I	GTNNAC	2 cut(s)	102, 128
Hpy99I	CGWCG	2 cut(s)	158, 263
HpyAV	CCTTC	3 cut(s)	68, 76, 456
HpyCH4III	ACNGT	2 cut(s)	99, 263
HpyCH4V	TGCA	2 cut(s)	75, 371
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	9, 62, 150, 465
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	1 cut(s)	607
MalI	GATC	4 cut(s)	11, 64, 152, 467
MboI	GATC	4 cut(s)	9, 62, 150, 465
MboII	GAAGA	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	97, 133
MmeI	TCCRAC	3 cut(s)	111, 439, 474
MnlI	CCTC	7 cut(s)	62, 122, 184, 187, 288, 406, 529
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	375
NdeII	GATC	4 cut(s)	9, 62, 150, 465
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	354, 523
NmeAIII	GCCGAG	2 cut(s)	163, 498
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	200, 250, 407
PkrI	GCNGC	3 cut(s)	136, 160, 622
PleI	GAGTC	2 cut(s)	97, 132
PpsI	GAGTC	2 cut(s)	97, 132
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	354, 523
PspPI	GGNCC	1 cut(s)	377
PstNI	CAGNNNCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
Rsr2I	CGGWCCG	1 cut(s)	377
RsrII	CGGWCCG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	135, 159, 621
Sau3AI	GATC	4 cut(s)	9, 62, 150, 465
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	97, 133
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	354, 361, 391, 447, 457, 540, 622, 653
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	377
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	92, 135, 159, 375
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	99, 263
TaqI	TCGA	2 cut(s)	61, 631
TasI	AATT	1 cut(s)	288
TauI	GCSGC	2 cut(s)	137, 161
TfiI	GAWTC	3 cut(s)	200, 250, 407
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	1 cut(s)	620
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.