Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009519

Physical Location & Seq

Genomic Coordinates Forward (+)

11948505 .. 11955884

Gene Structure 7380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGAAATCCTCCTCCGCCGCCGCCGCCAAGGCCACGCTTAATCCGCTCAGTGTCGCCTACGAGAACAAGAGGGATGCTTATGGATTTGCTGTGAGACCTCAGCATGTGCAACGCTACCGAGAATATGCCAATATCTACAAGGAAGAAGAGGAAGAAAGATCAGAAAGGTGGACCTCTTTTTTGCAACGGCAAGCAGAGTCTGCAAGATTGCCCGTAAATGGATCATCTAATGCAGAAGATAACAAGGCCTTGCAAGCTGAAACCTCAGAGCAAGAACTAGATTCCAGTTCAGAGAAGGGTGTTGATGGCGATGTTTTAGGTGATCAGAAGCCGGGTTCGAATTCTCCAATAAAAACTGATAGCGAAATGGAGGAACTGGCAGCTAAGGAGACAAAAGCTCATGGGATCCAAATATGGAATGAGATTAGATCATCCCTTCACGAAATTGAAGAAATGATGAGTATTCGTGTAAAGAAGAAGAGCAATTTATCAAAGACAGAGCAGGACACGAGAAATGGAAAGCCGGTTCATCCTATTGAAGAGTTTAGACCCCCAAAAGGAGCATCTGAGGAGGACTCTGAGGACGAGTTCTACGACGTGGAGAGGTCAGATCAAGATGCCCCTTCAAGTGACAGTATAAATGCCTCTGCAACAGGTGCTGCTTCTGACGTAGTCCCTTCAGAATCCTTATTTCCTTGGAAACAAGAGTTGGAGGTTCTTGTTCGTGGGGGAGTACCCATGGCTCTGAGGGGAGAGCTTTGGCAAGCATTTGTGGGTGTGAAGTTGCGGCGTGTTGATAATTATTACCAGGATCTGCTAGCTTCAGAAACTAAAGCTGGCAGTGATGTGGAACAACATAGCTTGGACTCAGACATAAATAGCAAGTTGTCAACAACTGATTCTGTATATGTACCTGAAAAGTGGAAAGGGCAGATTGAGAAGGATCTACCTCGTACATTTCCAGGTCACCCTGCTCTAGATGTGGATGGTAGAAATGCTTTGAGGCGGTTGCTTACCGCATATGCGCGACACAATCCTTCTGTTGGGTACTGTCAGGCCATGAATTTCTTTGCTGGCTTGCTACTACTTCTCATGCCCGAAGAAAATGCTTTTTGGGCTTTGATGGGAATCCTAGATGATTATTTTGATGGCTATTACTCTGAGGAAATGATAGAATCTCAGGTGGATCAACTTGTTTTCGAGGAGTTGGTGCATGAGAGATTTCCTAAATTAGTCAATCATCTAGATTACCTGGGAGTGCAAGTGGCATGGGTGACTGGACCATGGTTCCTTTCCATTTTCATGAATATGCTGCCATGGGAAAGTGTTCTACGAGTCTGGGATGTGCTTCTTTTTGAGGGGAACCGCGTGATGCTATTTAGGACCGCACTTGCTTTGATGGAGTTATATGGCCCTGCACTGGTTACTACCAAGGATGCTGGAGACGCAGTCACTCTGCTGCAATCACTGGCTGGCTCCACATTTGATAGCAGTCAACTAGTATTGACAGCTTGCATGGGTTACCAAAATGTAAATGAAACTAGATTACAAGAGTTGAGAAATAAACATCGGCCTGCTGTAATTAATGCTATTGAGGAAAGATCAAAGGGACTTCGGGCTTGGAAGGATTCTCAGGGTCTAGCTTCTAAGCTATACAATTTTAAGCACGACCCTAAATCAATGATAATAGAAACGAAGAAAGCAGAAAGAAATGGTGATTTATCACGTTCAGAGTCTGGGTCCACTAATGCAGATGAAATTCTTATTAGCTTGACTGGGGATGGGGAGTTGGATTCTGTTCCAGATCTTCAAGAGCAGATCTCTGTTTTGATACACACACACACACACACACACACACACACATTCATCAATGTACACCTGTCCATGGATTGCCAATTATTTTGCTTTTTGGAAAGAAAAAGATGCACGCATGGAACCTCATATCCGCTTCTAGCTGAGGAGCTGGAGACAGCATTGATGGAGATGGTTAAGCAGGATAATCGTCGGCAATTGCATGCTAGGGTTGAGCAATTAGAGCAAGAGGTTGCCGATCTTCGCCGAGCCCTTTCTGATAAGCAGGAACAGGAGAGTGTCATGCTCCAGGTGTTGATGCGAGTAGAGCAAGAGCAGAGATTAACTGAAGATGCGCGGAGATTTTCTGAGCAGGATGCAGCAGCACAGAGATATGCTGCTCAAGTGCTTCAGGAAAAGTATGAAGAGGCCACAGCTTCCCTCGCGGAAATGGAGAAGAGAGTTGTTATGGCAGAATCAATGTTAGAGGCTACTTTACAGTACCAAACTGGTCAACAGAAAACACAACCTTCTCCAAGATCTATACCTTCAGATTCTTCACCCAGAAGCAATCAAGAGCCCACACAAGAGTTCCCTGCAAGAAAGATTAGTTTGCTATCTCGACCATTTGGACTTGGTTGGCGCAATCGCAGCGAGGGAAAAACTGCTTCCAGCGAGGGACAGAGTCCTACCACAGAAAAGAAGGAAACAAATGCAGAACTTAAAGAGGCGAATGACGGCAAGCATATCAGTGAAGGACAAAGTCCTACCGCAGAATGCAAAGAGACAAATGCAGAACTTAAAGAGACAAATGGCATTGAAGTACAAGATAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

877

Amino Acids

98.77

Weight (kDa)

5.01

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	248 - 472	1.5e-51	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	333 - 490	1.9e-25	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55020 AT3G55020 AT3G55020
fragaria_vesca	FvH4_7g20590 FvH4_7g20590
malus_domestica	MD01G1114800.v1.1 MD07G1182800.v1.1
prunus_persica	Prupe.2G221500_v2.0.a1 Prupe.2G221500_v2.0.a1
pyrus_communis	pycom01g14370 pycom07g17540
rosa_chinensis	RchiOBHm_Chr1g0364631
rosa_laevigata	RLG00000027471
rosa_multiflora	Rmu_ssc0000282.1_g000019
rosa_roxburghii	Rroxscaffold_4G00291790 Rroxscaffold_4G00292210
rosa_rugosa	Rorug01G0317200
rosa_samantha	Rh1AG326200 Rh1BG287400 Rh1CG304200 Rh1DG319100
rosa_wichuraiana	Rw1G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	4 cut(s)	1027, 1368, 2149, 2237
AclWI	GGATC	6 cut(s)	229, 400, 413, 819, 951, 1194
AcsI	RAATTY	3 cut(s)	340, 1063, 1758
AcuI	CTGAAG	5 cut(s)	663, 807, 2160, 2186, 2325
AfaI	GTAC	7 cut(s)	735, 912, 955, 1049, 1875, 2294, 2616
AfiI	CCNNNNNNNGG	5 cut(s)	218, 557, 1043, 1420, 1885
AgsI	TTSAA	5 cut(s)	449, 539, 627, 1811, 2612
AhlI	ACTAGT	1 cut(s)	1498
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	4 cut(s)	807, 961, 1251, 2100
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AloI	GAACNNNNNNTCC	4 cut(s)	510, 542, 1927, 1959
Alw26I	GTCTC	6 cut(s)	88, 383, 1437, 1961, 2570, 2591
AlwI	GGATC	6 cut(s)	229, 400, 413, 819, 951, 1194
AlwNI	CAGNNNCTG	4 cut(s)	200, 659, 814, 1736
AoxI	GGCC	6 cut(s)	30, 246, 1056, 1411, 1571, 2220
ApeKI	GCWGC	8 cut(s)	380, 659, 1312, 1459, 2171, 2174, 2189, 2442
ApoI	RAATTY	3 cut(s)	340, 1063, 1758
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AseI	ATTAAT	1 cut(s)	1584
Asp700I	GAANNNNTTC	1 cut(s)	1326
AspLEI	GCGC	3 cut(s)	1027, 2149, 2436
AspS9I	GGNCC	5 cut(s)	171, 1280, 1383, 1412, 1740
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	5 cut(s)	332, 959, 1285, 1727, 2343
AsuII	TTCGAA	1 cut(s)	338
AsuNHI	GCTAGC	1 cut(s)	817
AvaII	GGWCC	4 cut(s)	171, 1280, 1383, 1740
BamHI	GGATCC	1 cut(s)	405
BanII	GRGCYC	2 cut(s)	2065, 2373
BauI	CACGAG	1 cut(s)	508
BbvCI	CCTCAGC	2 cut(s)	99, 1956
BbvI	GCAGC	8 cut(s)	392, 646, 1299, 1446, 2176, 2183, 2186, 2454
BccI	CCATC	8 cut(s)	299, 980, 1117, 1142, 1393, 1775, 1972, 1978
BceAI	ACGGC	2 cut(s)	203, 2545
BcgI	CGANNNNNNTGC	4 cut(s)	1088, 1122, 1982, 2016
BciT130I	CCWGG	4 cut(s)	809, 963, 1253, 2102
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	6 cut(s)	88, 383, 1437, 1961, 2570, 2591
BcuI	ACTAGT	1 cut(s)	1498
BglI	GCCNNNNNGGC	1 cut(s)	29
BglII	AGATCT	3 cut(s)	1804, 1818, 2330
Bme1390I	CCNGG	5 cut(s)	333, 809, 963, 1253, 2102
Bme18I	GGWCC	4 cut(s)	171, 1280, 1383, 1740
BmgBI	CACGTC	1 cut(s)	598
BmgT120I	GGNCC	5 cut(s)	171, 1280, 1383, 1412, 1740
BmiI	GGNNCC	6 cut(s)	407, 1289, 1364, 1477, 1741, 1936
BmrFI	CCNGG	5 cut(s)	333, 809, 963, 1253, 2102
BmrI	ACTGGG	1 cut(s)	1785
BmsI	GCATC	9 cut(s)	64, 572, 607, 1362, 1426, 1913, 2100, 2134, 2158
BmtI	GCTAGC	1 cut(s)	821
BmuI	ACTGGG	1 cut(s)	1785
BplI	GAGNNNNNCTC	4 cut(s)	560, 592, 1805, 1837
BpmI	CTGGAG	3 cut(s)	1461, 1985, 2084
Bpu10I	CCTNAGC	3 cut(s)	99, 384, 1956
Bpu14I	TTCGAA	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	2178
BpuMI	CCSGG	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	1127
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	8 cut(s)	27, 695, 738, 1252, 1283, 1316, 1431, 1884
BsaXI	ACNNNNNCTCC	4 cut(s)	1248, 1278, 1434, 1464
Bsc4I	CCNNNNNNNGG	5 cut(s)	218, 557, 1043, 1420, 1885
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	7 cut(s)	285, 381, 1282, 1425, 1473, 1780, 2305
Bse8I	GATNNNNATC	1 cut(s)	1127
BseBI	CCWGG	4 cut(s)	809, 963, 1253, 2102
BseDI	CCNNGG	8 cut(s)	27, 695, 738, 1252, 1283, 1316, 1431, 1884
BseGI	GGATG	8 cut(s)	79, 431, 529, 991, 1348, 1441, 1786, 2173
BseJI	GATNNNNATC	1 cut(s)	1127
BseLI	CCNNNNNNNGG	5 cut(s)	218, 557, 1043, 1420, 1885
BseNI	ACTGG	7 cut(s)	285, 381, 1282, 1425, 1473, 1780, 2305
BseRI	GAGGAG	3 cut(s)	584, 1217, 1973
BseXI	GCAGC	8 cut(s)	392, 646, 1299, 1446, 2176, 2183, 2186, 2454
BsgI	GTGCAG	1 cut(s)	1401
Bsh1236I	CGCG	4 cut(s)	1027, 1368, 2149, 2237
BshFI	GGCC	6 cut(s)	32, 248, 1058, 1413, 1573, 2222
BsiSI	CCGG	2 cut(s)	332, 524
BslFI	GGGAC	3 cut(s)	659, 1623, 2484
BslI	CCNNNNNNNGG	5 cut(s)	218, 557, 1043, 1420, 1885
BsmAI	GTCTC	6 cut(s)	88, 383, 1437, 1961, 2570, 2591
BsmBI	CGTCTC	1 cut(s)	1437
BsmFI	GGGAC	3 cut(s)	659, 1623, 2484
BsmI	GAATGC	1 cut(s)	2573
BsnI	GGCC	6 cut(s)	32, 248, 1058, 1413, 1573, 2222
Bso31I	GGTCTC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	2065, 2373
Bsp1407I	TGTACA	1 cut(s)	1873
Bsp19I	CCATGG	4 cut(s)	738, 1283, 1316, 1884
BspANI	GGCC	6 cut(s)	32, 248, 1058, 1413, 1573, 2222
BspFNI	CGCG	4 cut(s)	1027, 1368, 2149, 2237
BspHI	TCATGA	1 cut(s)	1302
BspLI	GGNNCC	6 cut(s)	407, 1289, 1364, 1477, 1741, 1936
BspOI	GCTAGC	1 cut(s)	821
BspPI	GGATC	6 cut(s)	229, 400, 413, 819, 951, 1194
BspQI	GCTCTTC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	523
BsrGI	TGTACA	1 cut(s)	1873
BsrI	ACTGG	7 cut(s)	285, 381, 1282, 1425, 1473, 1780, 2305
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	8 cut(s)	27, 695, 738, 1252, 1283, 1316, 1431, 1884
BssSI	CACGAG	1 cut(s)	508
BssT1I	CCWWGG	7 cut(s)	27, 695, 738, 1283, 1316, 1431, 1884
Bst2BI	CACGAG	1 cut(s)	508
Bst2UI	CCWGG	4 cut(s)	809, 963, 1253, 2102
Bst4CI	ACNGT	3 cut(s)	635, 1052, 2292
Bst6I	CTCTTC	5 cut(s)	141, 473, 534, 2211, 2243
BstAPI	GCANNNNNTGC	2 cut(s)	200, 656
BstAUI	TGTACA	1 cut(s)	1873
BstBI	TTCGAA	1 cut(s)	338
BstDSI	CCRYGG	4 cut(s)	738, 1283, 1316, 1884
BstEII	GGTNACC	2 cut(s)	965, 1520
BstF5I	GGATG	8 cut(s)	79, 431, 529, 991, 1348, 1441, 1786, 2173
BstFNI	CGCG	4 cut(s)	1027, 1368, 2149, 2237
BstHHI	GCGC	3 cut(s)	1027, 2149, 2436
BstMAI	GTCTC	6 cut(s)	88, 383, 1437, 1961, 2570, 2591
BstNI	CCWGG	4 cut(s)	809, 963, 1253, 2102
BstNSI	RCATGY	2 cut(s)	107, 2018
BstPI	GGTNACC	2 cut(s)	965, 1520
BstSCI	CCNGG	5 cut(s)	331, 807, 961, 1251, 2100
BstUI	CGCG	4 cut(s)	1027, 1368, 2149, 2237
BstV1I	GCAGC	8 cut(s)	392, 646, 1299, 1446, 2176, 2183, 2186, 2454
BstX2I	RGATCY	6 cut(s)	405, 811, 943, 1804, 1818, 2330
BstYI	RGATCY	6 cut(s)	405, 811, 943, 1804, 1818, 2330
BsuRI	GGCC	6 cut(s)	32, 248, 1058, 1413, 1573, 2222
BtgI	CCRYGG	4 cut(s)	738, 1283, 1316, 1884
BtgZI	GCGATG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	8 cut(s)	79, 431, 529, 991, 1348, 1441, 1786, 2173
BtsI	GCAGTG	1 cut(s)	847
BtsIMutI	CAGTG	5 cut(s)	55, 847, 1418, 1466, 2548
CaiI	CAGNNNCTG	4 cut(s)	200, 659, 814, 1736
CciI	TCATGA	1 cut(s)	1302
CfoI	GCGC	3 cut(s)	1027, 2149, 2436
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	5 cut(s)	171, 1280, 1383, 1412, 1740
CseI	GACGC	1 cut(s)	1454
Csp6I	GTAC	7 cut(s)	734, 911, 954, 1048, 1874, 2293, 2615
CviQI	GTAC	7 cut(s)	734, 911, 954, 1048, 1874, 2293, 2615
Eam1104I	CTCTTC	5 cut(s)	141, 473, 534, 2211, 2243
EarI	CTCTTC	5 cut(s)	141, 473, 534, 2211, 2243
EciI	GGCGGA	1 cut(s)	4
Eco130I	CCWWGG	7 cut(s)	27, 695, 738, 1283, 1316, 1431, 1884
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	2065, 2373
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	4 cut(s)	171, 1280, 1383, 1740
Eco57I	CTGAAG	5 cut(s)	663, 807, 2160, 2186, 2325
Eco91I	GGTNACC	2 cut(s)	965, 1520
EcoO65I	GGTNACC	2 cut(s)	965, 1520
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	4 cut(s)	807, 961, 1251, 2100
EcoT14I	CCWWGG	7 cut(s)	27, 695, 738, 1283, 1316, 1431, 1884
EcoT38I	GRGCYC	2 cut(s)	2065, 2373
ErhI	CCWWGG	7 cut(s)	27, 695, 738, 1283, 1316, 1431, 1884
Esp3I	CGTCTC	1 cut(s)	1437
FaqI	GGGAC	3 cut(s)	659, 1623, 2484
FauNDI	CATATG	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	322
FokI	GGATG	8 cut(s)	86, 418, 516, 998, 1355, 1448, 1793, 2180
FriOI	GRGCYC	2 cut(s)	2065, 2373
GlaI	GCGC	3 cut(s)	1026, 2148, 2435
GsuI	CTGGAG	3 cut(s)	1461, 1985, 2084
HaeIII	GGCC	6 cut(s)	32, 248, 1058, 1413, 1573, 2222
HapII	CCGG	2 cut(s)	332, 524
HgaI	GACGC	1 cut(s)	1454
HhaI	GCGC	3 cut(s)	1027, 2149, 2436
Hin6I	GCGC	3 cut(s)	1025, 2147, 2434
HinP1I	GCGC	3 cut(s)	1025, 2147, 2434
HincII	GTYRAC	3 cut(s)	891, 1496, 2306
HindII	GTYRAC	3 cut(s)	891, 1496, 2306
HpaII	CCGG	2 cut(s)	332, 524
HphI	GGTGA	5 cut(s)	332, 959, 1285, 1727, 2343
Hpy166II	GTNNAC	6 cut(s)	171, 891, 1496, 1743, 1876, 2306
Hpy8I	GTNNAC	6 cut(s)	171, 891, 1496, 1743, 1876, 2306
Hpy99I	CGWCG	2 cut(s)	599, 2007
HpyCH4III	ACNGT	3 cut(s)	635, 1052, 2292
HpyCH4IV	ACGT	3 cut(s)	597, 669, 1726
HpySE526I	ACGT	3 cut(s)	597, 669, 1726
HspAI	GCGC	3 cut(s)	1025, 2147, 2434
Ksp22I	TGATCA	1 cut(s)	322
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	4 cut(s)	560, 1481, 1960, 2103
Lsp1109I	GCAGC	8 cut(s)	392, 646, 1299, 1446, 2176, 2183, 2186, 2454
LweI	GCATC	9 cut(s)	64, 572, 607, 1362, 1426, 1913, 2100, 2134, 2158
MaeII	ACGT	3 cut(s)	597, 669, 1726
MaeIII	GTNAC	6 cut(s)	629, 965, 1273, 1423, 1450, 1520
MbiI	CCGCTC	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	2009
MflI	RGATCY	6 cut(s)	405, 811, 943, 1804, 1818, 2330
MhlI	GDGCHC	2 cut(s)	2065, 2373
MlyI	GAGTC	6 cut(s)	206, 569, 860, 1344, 1742, 2485
MmeI	TCCRAC	2 cut(s)	690, 1770
MroXI	GAANNNNTTC	1 cut(s)	1326
MseI	TTAA	7 cut(s)	39, 1584, 1662, 1989, 2135, 2514, 2592
MslI	CAYNNNNRTG	3 cut(s)	1301, 1307, 2541
MspI	CCGG	2 cut(s)	332, 524
MspR9I	CCNGG	5 cut(s)	333, 809, 963, 1253, 2102
MunI	CAATTG	1 cut(s)	2009
Mva1269I	GAATGC	1 cut(s)	2573
MvaI	CCWGG	4 cut(s)	809, 963, 1253, 2102
MvnI	CGCG	4 cut(s)	1027, 1368, 2149, 2237
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	4 cut(s)	738, 1283, 1316, 1884
NdeI	CATATG	1 cut(s)	1021
NheI	GCTAGC	1 cut(s)	817
NlaIV	GGNNCC	6 cut(s)	407, 1289, 1364, 1477, 1741, 1936
NmeAIII	GCCGAG	1 cut(s)	2084
NmuCI	GTSAC	4 cut(s)	629, 965, 1273, 1450
NspI	RCATGY	2 cut(s)	107, 2018
NspV	TTCGAA	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	2018
PagI	TCATGA	1 cut(s)	1302
PceI	AGGCCT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PctI	GAATGC	1 cut(s)	2573
PdmI	GAANNNNTTC	1 cut(s)	1326
PfeI	GAWTC	9 cut(s)	281, 683, 899, 1128, 1175, 1628, 1793, 2267, 2345
PflFI	GACNNNGTC	4 cut(s)	671, 1448, 2475, 2553
PleI	GAGTC	6 cut(s)	205, 569, 860, 1343, 1741, 2484
PpsI	GAGTC	6 cut(s)	205, 569, 860, 1343, 1741, 2484
PshBI	ATTAAT	1 cut(s)	1584
Psp6I	CCWGG	4 cut(s)	807, 961, 1251, 2100
PspEI	GGTNACC	2 cut(s)	965, 1520
PspGI	CCWGG	4 cut(s)	807, 961, 1251, 2100
PspN4I	GGNNCC	6 cut(s)	407, 1289, 1364, 1477, 1741, 1936
PspPI	GGNCC	5 cut(s)	171, 1280, 1383, 1412, 1740
PstNI	CAGNNNCTG	4 cut(s)	200, 659, 814, 1736
PsuI	RGATCY	6 cut(s)	405, 811, 943, 1804, 1818, 2330
PsyI	GACNNNGTC	4 cut(s)	671, 1448, 2475, 2553
RsaI	GTAC	7 cut(s)	735, 912, 955, 1049, 1875, 2294, 2616
RsaNI	GTAC	7 cut(s)	734, 911, 954, 1048, 1874, 2293, 2615
RseI	CAYNNNNRTG	3 cut(s)	1301, 1307, 2541
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	7 cut(s)	39, 1584, 1662, 1989, 2135, 2514, 2592
Sau96I	GGNCC	5 cut(s)	171, 1280, 1383, 1412, 1740
SchI	GAGTC	6 cut(s)	206, 569, 860, 1344, 1742, 2485
ScrFI	CCNGG	5 cut(s)	333, 809, 963, 1253, 2102
SduI	GDGCHC	2 cut(s)	2065, 2373
SfaNI	GCATC	9 cut(s)	64, 572, 607, 1362, 1426, 1913, 2100, 2134, 2158
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	4 cut(s)	171, 1280, 1383, 1740
SmiMI	CAYNNNNRTG	3 cut(s)	1301, 1307, 2541
SmlI	CTYRAG	1 cut(s)	2193
SmoI	CTYRAG	1 cut(s)	2193
SpeI	ACTAGT	1 cut(s)	1498
SphI	GCATGC	1 cut(s)	2018
SseBI	AGGCCT	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	5 cut(s)	331, 807, 961, 1251, 2100
StyI	CCWWGG	7 cut(s)	27, 695, 738, 1283, 1316, 1431, 1884
TaaI	ACNGT	3 cut(s)	635, 1052, 2292
TaiI	ACGT	3 cut(s)	600, 672, 1729
TaqI	TCGA	3 cut(s)	338, 1200, 2413
TatI	WGTACW	2 cut(s)	1873, 2614
TauI	GCSGC	4 cut(s)	20, 23, 26, 790
TfiI	GAWTC	9 cut(s)	281, 683, 899, 1128, 1175, 1628, 1793, 2267, 2345
Tru1I	TTAA	7 cut(s)	39, 1584, 1662, 1989, 2135, 2514, 2592
Tru9I	TTAA	7 cut(s)	39, 1584, 1662, 1989, 2135, 2514, 2592
TscAI	CASTG	5 cut(s)	55, 847, 1425, 1473, 2548
TseFI	GTSAC	4 cut(s)	629, 965, 1273, 1450
TseI	GCWGC	8 cut(s)	380, 659, 1312, 1459, 2171, 2174, 2189, 2442
Tsp45I	GTSAC	4 cut(s)	629, 965, 1273, 1450
TspDTI	ATGAA	9 cut(s)	17, 518, 1076, 1291, 1319, 1551, 1770, 1855, 2229
TspRI	CASTG	5 cut(s)	55, 847, 1425, 1473, 2548
Tth111I	GACNNNGTC	4 cut(s)	671, 1448, 2475, 2553
VpaK11BI	GGWCC	4 cut(s)	171, 1280, 1383, 1740
VspI	ATTAAT	1 cut(s)	1584
XapI	RAATTY	3 cut(s)	340, 1063, 1758
XbaI	TCTAGA	2 cut(s)	976, 1243
XceI	RCATGY	2 cut(s)	107, 2018
XmnI	GAANNNNTTC	1 cut(s)	1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.