Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009519

Physical Location & Seq

Genomic Coordinates Forward (+)

12565875 .. 12573908

Gene Structure 8034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2625 bp

ATGAAATCCTCCTCCGCCGCCGCCGCCGCCGCCAAGGCCACGCTTAATCCGCTCAGTGTCGCCTACGAGAACAAGAGTGATTTGGCTGAAGCTGAGTTAGTGTTTGAGATCGGAGCTGTTCGTTTGTGTGTAGTTTTGGTAGGATTTGTGTTTTCGTTTGCTTTTGAATGTGCATTGAGGCAATGCCGAGCTCTATGGGAAGTAGAATATGCCAATTGCAGGGATGCTTATGGATTTGCTGTGAGACCTCAGCATGTGCACCGCTACCGAGAATATGCCAATATCTACAAGGTTTTACTCTATCTTAATTTCCACTTTCCAGTTGACGTTTCGGGTTTGTATGAGAAATGTGAAGAAGAGGAAGAAAGATCAGAAAGGTGGACCTCTTTTTTGCAACGGCAAGCAGAGTCTGCAAGGTTGCCCGTAAATGGATCATCTAATGCAGAAGATAACAAGGCCTTGCAAGCTGAGACCTCAGAGCAAGAACTAGATTCCAGTTCAGAGAAGGGTGTTGATGGCGATGTTTTAGGTGACCAGAAGCCGGGTTCGAATTCTCCAATAAAAAATGATAGCGAAATGGAGGAACTGGCAGCGAAGGAGACAAAAGCTCATGGGATCCAAATATGGAATGAGATTAGATCATCCCTTCACGAAATTGAAGAAATGATGAGTATTCGTGTAAAGAAGAAGAGCAATTTATCAAAGACAGAGCAGGACACGAGAAATGGAAAGCCGGTTCATCCTATTGAAGAGTTTAGACCCCCAAAAGGAGCATCTGAGGAGGACTCTGAGGACGAGTTCTACGACATGGAGAGGTCAGACCAAGATGCCCCTTCAAGTGACAGTATAAATGCCTCTGCAACAGGTGCTGCTTCTGACGTAGTCCCTTCAGAATCCTTATTTCCTTGGAAACAAGAGTTGGAGGTTCTTGTTCGTGGGGGAGTACCCATGGCTCTGAGGGGAGAGCTTTGGCAAGCATTTGTGGGTGTGAAGGTGCGGCGTGTTGATAATTATTACCAGGATCTGCTAGCTTCTGAAACTAAAGCTGGCAGTGATGTGGAACAACATAGCTTGGACTCAGACATAAATAGCAAGTTGTCAACAACTGATTCTGCATATGTACCCGAAAAGTGGAAAGGACAGATTGAGAAGGACCTACCTCGTACATTTCCAGGTCACCCTGCTCTAGATGTGGATGGTAGAAATGCTTTGAGGCGATTGCTTACTGCATATGCGCGACACAATCCTTCTGTTGGGTACTGTCAGGCCATGAATTTCTTTGCTGGCTTGCTACTACTTCTCATGCCTGAAGAAAATGCTTTTTGGGCTTTGATGGGAATCCTAGATGATTATTTTGAGGGCTATTACTCTGAGGAAATGATAGAATCTCAGGTGGATCAACTTGTTTTCGAGGAGTTGGTGCATGAGAGATTTCCTAAATTAGGTTTTCAATCATCTAGATTACCTGGGAGTGCAAGTGGCATGGGTGACTGGACCATGGTTCCTTTCCATTTTCATGAATATGCTGCCATGGGAAAGTGGTCAGTTCTACGAGTCTGGGATGTGCTTCTTTTTGAGGGGAACCGCGTGATGCTATTTAGGACCGCACTTGCTTTGATGGAGTTATATGGCCCTGCACTGGTTACTACCAAGGATGCTGGAGATGCAGTCACTCTGCTGCAATCGCTGGCTGGCTCCACATTTGATAGCAGTCAACTAGTATTGACAGCTTGCATGGGTTACCAAAATGTAAATGAAACTAGATTACAAGAGTTGAGAAATAAACATCGGCCTGCTGTAATTAATGCTATTGAGGAAAGATCAAAGGGACTTCGGGCTTGGAAGGATTCTCAGGGTCTAGCTTCTAAGCTATACAATTTTAAGCAAGATCCTAAATCAATGATAATAGAAACGAAGAAAGCAGAAAGAAATGGTGATTTATCACGTTCAGAGTCTGGGTCCACTAATGCAGATGAAATTCTTATTAGCTTGACTGAGGATGGGGAGTTGGATTCTGTTCCAGATCTTCAAGAGCAGGTTGAGCAATTAGAGCAAGAGGTCGCCGATCTTCGCCGAGCCCTTTCTGATAAGCAGGAACAGGAGAGTGTCATGCTCCAGGTGTTGATGCGAGTAGAGCAAGAGCAGAGATTAACTGAAGATGCGCGGAGATTTTCTGAGCAAGATGCAGCAGCACAGAGATATGCTGCTCAAGTGCTTCAGGAAAAGTATGAAGAGGCCACTGCTTCCCTCGCAGAAATGGAGAAGAGAGTTGTTATGGCAGAATCAATGTTAGAGGCTACTTTACAGTACCAAACTGGTCAACAGAAAACACAACCTTCTCCACGATCTTTATCTTTAGATTCTTCACCCAGAAGCAATCAAGAGCCCACACAAGAGTTCCCTGCAAGAAAGATTAGTTTGCTATCTCGACCATTTGGACTTGGTTGGTGCAATCGCAGTGAGGGAAAAACTGCTTCCAGTGAGGGACAGTGTCCTACCACAGAAAGGAAAGAAACAAATGCAGAACTTAAAGAGGCGAATGACGGCAAGCATATCAGTGAAGGACAAAGTCCTACCGCAGAATGCAAAGAGACAAATGGCATTGAAGTACAAGATAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

874

Amino Acids

98.02

Weight (kDa)

4.85

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	318 - 545	4.4e-37	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	403 - 563	7e-15	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55020 AT3G55020 AT3G55020
fragaria_vesca	FvH4_7g20590 FvH4_7g20590
malus_domestica	MD01G1114800.v1.1 MD07G1182800.v1.1
prunus_persica	Prupe.2G221500_v2.0.a1 Prupe.2G221500_v2.0.a1
pyrus_communis	pycom01g14370 pycom07g17540
rosa_chinensis	RchiOBHm_Chr1g0364631
rosa_laevigata	RLG00000027471
rosa_multiflora	Rmu_ssc0000282.1_g000019
rosa_roxburghii	Rroxscaffold_4G00291790 Rroxscaffold_4G00292210
rosa_rugosa	Rorug01G0317200
rosa_samantha	Rh1AG326200 Rh1BG287400 Rh1CG304200 Rh1DG319100
rosa_wichuraiana	Rw1G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2026
AccBSI	CCGCTC	1 cut(s)	52
AccII	CGCG	3 cut(s)	1237, 1587, 2164
AclWI	GGATC	6 cut(s)	439, 610, 623, 1029, 1404, 1883
AcsI	RAATTY	3 cut(s)	550, 1273, 1977
AcuI	CTGAAG	5 cut(s)	108, 873, 1329, 2175, 2201
AfaI	GTAC	6 cut(s)	945, 1122, 1165, 1259, 2309, 2610
AfiI	CCNNNNNNNGG	9 cut(s)	219, 428, 541, 767, 1131, 1253, 1442, 1639, 2505
AgsI	TTSAA	7 cut(s)	167, 659, 749, 837, 1451, 2030, 2606
AhlI	ACTAGT	1 cut(s)	1717
AjnI	CCWGG	4 cut(s)	1017, 1171, 1465, 2115
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AloI	GAACNNNNNNTCC	2 cut(s)	720, 752
Alw21I	GWGCWC	2 cut(s)	193, 261
Alw26I	GTCTC	4 cut(s)	238, 464, 593, 2585
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	6 cut(s)	439, 610, 623, 1029, 1404, 1883
AlwNI	CAGNNNCTG	4 cut(s)	410, 869, 1024, 1955
AoxI	GGCC	6 cut(s)	36, 456, 1266, 1630, 1790, 2235
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	7 cut(s)	590, 869, 1526, 1678, 2186, 2189, 2204
ApoI	RAATTY	3 cut(s)	550, 1273, 1977
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AseI	ATTAAT	1 cut(s)	1803
AspLEI	GCGC	2 cut(s)	1237, 2164
AspS9I	GGNCC	6 cut(s)	381, 1153, 1494, 1602, 1631, 1959
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	5 cut(s)	542, 1169, 1499, 1946, 2358
AsuII	TTCGAA	1 cut(s)	548
AsuNHI	GCTAGC	1 cut(s)	1027
AvaII	GGWCC	5 cut(s)	381, 1153, 1494, 1602, 1959
BaeGI	GKGCMC	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	615
BanII	GRGCYC	3 cut(s)	193, 2080, 2388
BauI	CACGAG	1 cut(s)	718
Bbv12I	GWGCWC	2 cut(s)	193, 261
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	7 cut(s)	602, 856, 1513, 1665, 2191, 2198, 2201
BccI	CCATC	5 cut(s)	509, 1190, 1327, 1612, 1994
BceAI	ACGGC	2 cut(s)	413, 2560
BciT130I	CCWGG	4 cut(s)	1019, 1173, 1467, 2117
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	4 cut(s)	238, 464, 593, 2585
BcuI	ACTAGT	1 cut(s)	1717
BfaI	CTAG	8 cut(s)	488, 1028, 1187, 1343, 1458, 1718, 1761, 1859
BfuAI	ACCTGC	1 cut(s)	2026
BglI	GCCNNNNNGGC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	2023
Bme1390I	CCNGG	5 cut(s)	543, 1019, 1173, 1467, 2117
Bme18I	GGWCC	5 cut(s)	381, 1153, 1494, 1602, 1959
BmgT120I	GGNCC	6 cut(s)	381, 1153, 1494, 1602, 1631, 1959
BmiI	GGNNCC	5 cut(s)	617, 1503, 1583, 1696, 1960
BmrFI	CCNGG	5 cut(s)	543, 1019, 1173, 1467, 2117
BmsI	GCATC	9 cut(s)	214, 782, 817, 1581, 1645, 1654, 2115, 2149, 2173
BmtI	GCTAGC	1 cut(s)	1031
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BpmI	CTGGAG	2 cut(s)	1680, 2099
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	2193
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	2 cut(s)	1337, 2350
BsaI	GGTCTC	2 cut(s)	238, 464
BsaJI	CCNNGG	7 cut(s)	33, 905, 948, 1466, 1497, 1530, 1650
BsaXI	ACNNNNNCTCC	4 cut(s)	1462, 1492, 1653, 1683
Bsc4I	CCNNNNNNNGG	9 cut(s)	219, 428, 541, 767, 1131, 1253, 1442, 1639, 2505
Bse118I	RCCGGY	1 cut(s)	733
Bse1I	ACTGG	7 cut(s)	320, 495, 591, 1496, 1644, 2320, 2478
Bse3DI	GCAATG	1 cut(s)	188
Bse8I	GATNNNNATC	2 cut(s)	1337, 2350
BseBI	CCWGG	4 cut(s)	1019, 1173, 1467, 2117
BseDI	CCNNGG	7 cut(s)	33, 905, 948, 1466, 1497, 1530, 1650
BseGI	GGATG	7 cut(s)	229, 641, 739, 1201, 1567, 1660, 2005
BseJI	GATNNNNATC	2 cut(s)	1337, 2350
BseLI	CCNNNNNNNGG	9 cut(s)	219, 428, 541, 767, 1131, 1253, 1442, 1639, 2505
BseMI	GCAATG	1 cut(s)	188
BseNI	ACTGG	7 cut(s)	320, 495, 591, 1496, 1644, 2320, 2478
BseRI	GAGGAG	2 cut(s)	794, 1427
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	7 cut(s)	602, 856, 1513, 1665, 2191, 2198, 2201
BsgI	GTGCAG	1 cut(s)	1620
Bsh1236I	CGCG	3 cut(s)	1237, 1587, 2164
BshFI	GGCC	6 cut(s)	38, 458, 1268, 1632, 1792, 2237
BsiHKAI	GWGCWC	2 cut(s)	193, 261
BsiSI	CCGG	2 cut(s)	542, 734
BslFI	GGGAC	3 cut(s)	869, 1842, 2499
BslI	CCNNNNNNNGG	9 cut(s)	219, 428, 541, 767, 1131, 1253, 1442, 1639, 2505
BsmAI	GTCTC	4 cut(s)	238, 464, 593, 2585
BsmFI	GGGAC	3 cut(s)	869, 1842, 2499
BsmI	GAATGC	1 cut(s)	2588
BsnI	GGCC	6 cut(s)	38, 458, 1268, 1632, 1792, 2237
Bso31I	GGTCTC	2 cut(s)	238, 464
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	4 cut(s)	193, 261, 2080, 2388
Bsp19I	CCATGG	3 cut(s)	948, 1497, 1530
BspANI	GGCC	6 cut(s)	38, 458, 1268, 1632, 1792, 2237
BspFNI	CGCG	3 cut(s)	1237, 1587, 2164
BspHI	TCATGA	1 cut(s)	1516
BspLI	GGNNCC	5 cut(s)	617, 1503, 1583, 1696, 1960
BspMI	ACCTGC	1 cut(s)	2026
BspOI	GCTAGC	1 cut(s)	1031
BspPI	GGATC	6 cut(s)	439, 610, 623, 1029, 1404, 1883
BspQI	GCTCTTC	1 cut(s)	683
BspT104I	TTCGAA	1 cut(s)	548
BspTNI	GGTCTC	2 cut(s)	238, 464
BsrBI	CCGCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	733
BsrI	ACTGG	7 cut(s)	320, 495, 591, 1496, 1644, 2320, 2478
BssAI	RCCGGY	1 cut(s)	733
BssECI	CCNNGG	7 cut(s)	33, 905, 948, 1466, 1497, 1530, 1650
BssSI	CACGAG	1 cut(s)	718
BssT1I	CCWWGG	6 cut(s)	33, 905, 948, 1497, 1530, 1650
Bst2BI	CACGAG	1 cut(s)	718
Bst2UI	CCWGG	4 cut(s)	1019, 1173, 1467, 2117
Bst4CI	ACNGT	4 cut(s)	845, 1262, 2307, 2490
Bst6I	CTCTTC	5 cut(s)	351, 683, 744, 2226, 2258
BstAPI	GCANNNNNTGC	2 cut(s)	410, 866
BstBI	TTCGAA	1 cut(s)	548
BstDSI	CCRYGG	3 cut(s)	948, 1497, 1530
BstEII	GGTNACC	3 cut(s)	530, 1175, 1739
BstENI	CCTNNNNNAGG	1 cut(s)	1440
BstF5I	GGATG	7 cut(s)	229, 641, 739, 1201, 1567, 1660, 2005
BstFNI	CGCG	3 cut(s)	1237, 1587, 2164
BstHHI	GCGC	2 cut(s)	1237, 2164
BstMAI	GTCTC	4 cut(s)	238, 464, 593, 2585
BstNI	CCWGG	4 cut(s)	1019, 1173, 1467, 2117
BstNSI	RCATGY	1 cut(s)	257
BstPI	GGTNACC	3 cut(s)	530, 1175, 1739
BstSCI	CCNGG	5 cut(s)	541, 1017, 1171, 1465, 2115
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	3 cut(s)	1237, 1587, 2164
BstV1I	GCAGC	7 cut(s)	602, 856, 1513, 1665, 2191, 2198, 2201
BstX2I	RGATCY	4 cut(s)	615, 1021, 1888, 2023
BstYI	RGATCY	4 cut(s)	615, 1021, 1888, 2023
BsuRI	GGCC	6 cut(s)	38, 458, 1268, 1632, 1792, 2237
BtgI	CCRYGG	3 cut(s)	948, 1497, 1530
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	7 cut(s)	229, 641, 739, 1201, 1567, 1660, 2005
BtsI	GCAGTG	3 cut(s)	1057, 2238, 2464
BtsIMutI	CAGTG	8 cut(s)	61, 1057, 1637, 2238, 2464, 2485, 2495, 2563
BveI	ACCTGC	1 cut(s)	2026
CaiI	CAGNNNCTG	4 cut(s)	410, 869, 1024, 1955
CciI	TCATGA	1 cut(s)	1516
CfoI	GCGC	2 cut(s)	1237, 2164
Cfr10I	RCCGGY	1 cut(s)	733
Cfr13I	GGNCC	6 cut(s)	381, 1153, 1494, 1602, 1631, 1959
Csp6I	GTAC	6 cut(s)	944, 1121, 1164, 1258, 2308, 2609
CviQI	GTAC	6 cut(s)	944, 1121, 1164, 1258, 2308, 2609
Eam1104I	CTCTTC	5 cut(s)	351, 683, 744, 2226, 2258
EarI	CTCTTC	5 cut(s)	351, 683, 744, 2226, 2258
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	6 cut(s)	33, 905, 948, 1497, 1530, 1650
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	3 cut(s)	193, 2080, 2388
Eco31I	GGTCTC	2 cut(s)	238, 464
Eco47I	GGWCC	5 cut(s)	381, 1153, 1494, 1602, 1959
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	5 cut(s)	108, 873, 1329, 2175, 2201
Eco91I	GGTNACC	3 cut(s)	530, 1175, 1739
EcoICRI	GAGCTC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	1440
EcoO109I	RGGNCCY	1 cut(s)	1153
EcoO65I	GGTNACC	3 cut(s)	530, 1175, 1739
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	4 cut(s)	1017, 1171, 1465, 2115
EcoT14I	CCWWGG	6 cut(s)	33, 905, 948, 1497, 1530, 1650
EcoT38I	GRGCYC	3 cut(s)	193, 2080, 2388
ErhI	CCWWGG	6 cut(s)	33, 905, 948, 1497, 1530, 1650
FaqI	GGGAC	3 cut(s)	869, 1842, 2499
FauNDI	CATATG	2 cut(s)	1117, 1231
FokI	GGATG	7 cut(s)	236, 628, 726, 1208, 1574, 1667, 2012
FriOI	GRGCYC	3 cut(s)	193, 2080, 2388
FspBI	CTAG	8 cut(s)	488, 1028, 1187, 1343, 1458, 1718, 1761, 1859
GlaI	GCGC	2 cut(s)	1236, 2163
GsuI	CTGGAG	2 cut(s)	1680, 2099
HaeIII	GGCC	6 cut(s)	38, 458, 1268, 1632, 1792, 2237
HapII	CCGG	2 cut(s)	542, 734
HhaI	GCGC	2 cut(s)	1237, 2164
Hin6I	GCGC	2 cut(s)	1235, 2162
HinP1I	GCGC	2 cut(s)	1235, 2162
HincII	GTYRAC	4 cut(s)	325, 1101, 1715, 2321
HindII	GTYRAC	4 cut(s)	325, 1101, 1715, 2321
HpaII	CCGG	2 cut(s)	542, 734
HphI	GGTGA	5 cut(s)	542, 1169, 1499, 1946, 2358
Hpy166II	GTNNAC	7 cut(s)	259, 325, 381, 1101, 1715, 1962, 2321
Hpy188III	TCNNGA	9 cut(s)	650, 1187, 1458, 1517, 2021, 2030, 2219, 2381, 2427
Hpy8I	GTNNAC	7 cut(s)	259, 325, 381, 1101, 1715, 1962, 2321
HpyCH4III	ACNGT	4 cut(s)	845, 1262, 2307, 2490
HpyCH4IV	ACGT	3 cut(s)	327, 879, 1945
HpySE526I	ACGT	3 cut(s)	327, 879, 1945
HspAI	GCGC	2 cut(s)	1235, 2162
LguI	GCTCTTC	1 cut(s)	683
LmnI	GCTCC	4 cut(s)	113, 770, 1700, 2118
Lsp1109I	GCAGC	7 cut(s)	602, 856, 1513, 1665, 2191, 2198, 2201
LweI	GCATC	9 cut(s)	214, 782, 817, 1581, 1645, 1654, 2115, 2149, 2173
MaeI	CTAG	8 cut(s)	488, 1028, 1187, 1343, 1458, 1718, 1761, 1859
MaeII	ACGT	3 cut(s)	327, 879, 1945
MaeIII	GTNAC	7 cut(s)	530, 839, 1175, 1487, 1642, 1669, 1739
MbiI	CCGCTC	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	214
MflI	RGATCY	4 cut(s)	615, 1021, 1888, 2023
MhlI	GDGCHC	4 cut(s)	193, 261, 2080, 2388
MlyI	GAGTC	5 cut(s)	416, 779, 1070, 1563, 1961
MmeI	TCCRAC	2 cut(s)	900, 1989
MseI	TTAA	6 cut(s)	45, 306, 1803, 1881, 2150, 2529
MslI	CAYNNNNRTG	3 cut(s)	1515, 1521, 2556
MspI	CCGG	2 cut(s)	542, 734
MspR9I	CCNGG	5 cut(s)	543, 1019, 1173, 1467, 2117
MunI	CAATTG	1 cut(s)	214
Mva1269I	GAATGC	1 cut(s)	2588
MvaI	CCWGG	4 cut(s)	1019, 1173, 1467, 2117
MvnI	CGCG	3 cut(s)	1237, 1587, 2164
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	3 cut(s)	948, 1497, 1530
NdeI	CATATG	2 cut(s)	1117, 1231
NheI	GCTAGC	1 cut(s)	1027
NlaIV	GGNNCC	5 cut(s)	617, 1503, 1583, 1696, 1960
NmeAIII	GCCGAG	2 cut(s)	212, 2099
NmuCI	GTSAC	5 cut(s)	530, 839, 1175, 1487, 1669
NspI	RCATGY	1 cut(s)	257
NspV	TTCGAA	1 cut(s)	548
PagI	TCATGA	1 cut(s)	1516
PceI	AGGCCT	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	2588
PfeI	GAWTC	9 cut(s)	491, 893, 1109, 1338, 1385, 1847, 2012, 2282, 2360
PflFI	GACNNNGTC	3 cut(s)	881, 2490, 2568
PleI	GAGTC	5 cut(s)	415, 779, 1070, 1562, 1960
PpsI	GAGTC	5 cut(s)	415, 779, 1070, 1562, 1960
PpuMI	RGGWCCY	1 cut(s)	1153
PshBI	ATTAAT	1 cut(s)	1803
Psp124BI	GAGCTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	1153
Psp6I	CCWGG	4 cut(s)	1017, 1171, 1465, 2115
PspEI	GGTNACC	3 cut(s)	530, 1175, 1739
PspGI	CCWGG	4 cut(s)	1017, 1171, 1465, 2115
PspN4I	GGNNCC	5 cut(s)	617, 1503, 1583, 1696, 1960
PspPI	GGNCC	6 cut(s)	381, 1153, 1494, 1602, 1631, 1959
PspPPI	RGGWCCY	1 cut(s)	1153
PstNI	CAGNNNCTG	4 cut(s)	410, 869, 1024, 1955
PsuI	RGATCY	4 cut(s)	615, 1021, 1888, 2023
PsyI	GACNNNGTC	3 cut(s)	881, 2490, 2568
RsaI	GTAC	6 cut(s)	945, 1122, 1165, 1259, 2309, 2610
RsaNI	GTAC	6 cut(s)	944, 1121, 1164, 1258, 2308, 2609
RseI	CAYNNNNRTG	3 cut(s)	1515, 1521, 2556
SacI	GAGCTC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	683
SaqAI	TTAA	6 cut(s)	45, 306, 1803, 1881, 2150, 2529
Sau96I	GGNCC	6 cut(s)	381, 1153, 1494, 1602, 1631, 1959
SchI	GAGTC	5 cut(s)	416, 779, 1070, 1563, 1961
ScrFI	CCNGG	5 cut(s)	543, 1019, 1173, 1467, 2117
SduI	GDGCHC	4 cut(s)	193, 261, 2080, 2388
SfaNI	GCATC	9 cut(s)	214, 782, 817, 1581, 1645, 1654, 2115, 2149, 2173
SfuI	TTCGAA	1 cut(s)	548
SinI	GGWCC	5 cut(s)	381, 1153, 1494, 1602, 1959
SmiMI	CAYNNNNRTG	3 cut(s)	1515, 1521, 2556
SmlI	CTYRAG	1 cut(s)	2208
SmoI	CTYRAG	1 cut(s)	2208
SpeI	ACTAGT	1 cut(s)	1717
SseBI	AGGCCT	1 cut(s)	458
SspMI	CTAG	8 cut(s)	488, 1028, 1187, 1343, 1458, 1718, 1761, 1859
SstI	GAGCTC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	5 cut(s)	541, 1017, 1171, 1465, 2115
StyI	CCWWGG	6 cut(s)	33, 905, 948, 1497, 1530, 1650
TaaI	ACNGT	4 cut(s)	845, 1262, 2307, 2490
TaiI	ACGT	3 cut(s)	330, 882, 1948
TaqI	TCGA	3 cut(s)	548, 1410, 2428
TatI	WGTACW	1 cut(s)	2608
TauI	GCSGC	6 cut(s)	20, 23, 26, 29, 32, 1000
TfiI	GAWTC	9 cut(s)	491, 893, 1109, 1338, 1385, 1847, 2012, 2282, 2360
Tru1I	TTAA	6 cut(s)	45, 306, 1803, 1881, 2150, 2529
Tru9I	TTAA	6 cut(s)	45, 306, 1803, 1881, 2150, 2529
TscAI	CASTG	8 cut(s)	61, 1057, 1644, 2245, 2464, 2485, 2495, 2563
TseFI	GTSAC	5 cut(s)	530, 839, 1175, 1487, 1669
TseI	GCWGC	7 cut(s)	590, 869, 1526, 1678, 2186, 2189, 2204
Tsp45I	GTSAC	5 cut(s)	530, 839, 1175, 1487, 1669
TspDTI	ATGAA	8 cut(s)	17, 728, 1286, 1505, 1533, 1770, 1989, 2244
TspRI	CASTG	8 cut(s)	61, 1057, 1644, 2245, 2464, 2485, 2495, 2563
Tth111I	GACNNNGTC	3 cut(s)	881, 2490, 2568
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	5 cut(s)	381, 1153, 1494, 1602, 1959
VspI	ATTAAT	1 cut(s)	1803
XagI	CCTNNNNNAGG	1 cut(s)	1440
XapI	RAATTY	3 cut(s)	550, 1273, 1977
XbaI	TCTAGA	2 cut(s)	1186, 1457
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	8 cut(s)	488, 1028, 1187, 1343, 1458, 1718, 1761, 1859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.