pycom01g14370

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
14557500 .. 14560923
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14370.7

Sequence Viewer

Length: 1365 bp
ATGAAATCCGCCGCCAAAGTCTCGCTCAACCCGCTCGGCGCCTACGAGCACAAAAGGGATGCTTATGGATTTGCTGTGAGGCCTCAGCATGTACAACGATATCGAGAATATGCCAGTATCTACAAGGAAGAGGAGGAGGAAAGATCAGAAAGGTGGAAGTCTTTCCTGGAACTACAAGCAGAGTCTGCTGAATTGCCAGTAGATGGATCATCTAAGGGACAAGATAACTCGCTTGTCGAAGCCTCAGCAAAAGAACTAGACTCCAATTCAGAAAAGGGTGTTGATGGTGATGATTTAAGTGACCAGAAGACAGGTTCTGATTCTCCAACCAAAAGCGACAATGACAAGGAGGAACTGACAGCTAATGACAAAAATGCTCATGGCATCCAAATATGGAATGAGATTAGACCATCCCTTCATGCCATTGAGAATCTGATGAGTATTCGTATAAAGAAGAAGAAGAACAATTTATCAAAGCATGAGCAGGACACAGGAATTGGGAAGCCACTTACTTCTATTCAAGAGGCTAGATACCCAAAAGGAGCATCTGAGGAGGATTCTGAGGATGAGTTCTATGATGTGGAGAGGTCAGACCCAGTTCAAGATGTCCCTTCGAGTGACAGTCTGAGTACATCTGCAACTGGTGCTGCTTCTGACACAGTTGGTTCAGAATCTTTATTTCCTTGGAAAGAGGAATTGGAGGTTCTTGTTCGTGGGGGAGTGCCAATGGCTCTCAGGGGAGAGCTTTGGCAAGCCTTTGTGGGTGTGAAGGCACGGCGCGCGGATAACTATTACCAGGATCTGCTAGCTTCTGAAACTAATGCTGGTGGTGATGTGGAAAAACATAGCTCGGAATCAGACAGTGATAGCAAATTGTCAACAACAGATCCTGTATCTGTACCTGAAAAATGGAAAGGGCAGATTGAGAAGGATCTACCTCGAACATTTCCAGGTCACCCTGCTCTTGATGAAGATGGTAGAAATGCTTTGAGGCGTTTGCTTACTGCATATGCGCGACACAATCCCACTGTTGGGTACTGTCAGGCCATGAATTTTTTTGCTGGCTTATTACTACTTCTCATGCCTGAAGAAAATGCCTTTTGGGCTTTAATGGGGCTCTTAGATGATTATTTTGATGGCTATTACTCCGAGGAAATGATAGAATCTCAGGTGGATCAACTTGTTTTTGAGGAGTTGGTGCATGAGAGATTTCCTAAATTGGTCAACCATCTAGGTTACCTGGGAGTGCAGGTGGCATGGGTTACCGGGCCATGGTTCCTTACGATTTTCATGAACATGCTTCCATGGGAAAGTGGTCAGTTCTTCGGGTCTGGGACGTTCTTCTTTTTGAGGGGAACCGCGTGA

Protein Analysis

455

Amino Acids

50.88

Weight (kDa)

4.75

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1240
Acc36I ACCTGC 1 cut(s) 1240
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 34
AccII CGCG 4 cut(s) 780, 782, 1015, 1361
AciI CCGC 5 cut(s) 9, 12, 32, 782, 1359
AclWI GGATC 5 cut(s) 214, 807, 881, 939, 1182
AcsI RAATTY 1 cut(s) 1051
AcuI CTGAAG 1 cut(s) 1107
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 4 cut(s) 93, 631, 900, 1037
AfiI CCNNNNNNNGG 4 cut(s) 203, 1031, 1032, 1272
AgsI TTSAA 2 cut(s) 521, 602
AjnI CCWGG 4 cut(s) 165, 795, 949, 1239
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 4 cut(s) 362, 745, 809, 849
AluI AGCT 4 cut(s) 362, 745, 809, 849
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 5 cut(s) 214, 807, 881, 939, 1182
AlwNI CAGNNNCTG 4 cut(s) 185, 317, 802, 890
AoxI GGCC 3 cut(s) 80, 1044, 1268
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 1051
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 4 cut(s) 41, 780, 782, 1015
AspS9I GGNCC 1 cut(s) 1268
AsuC2I CCSGG 1 cut(s) 1267
AsuHPI GGTGA 3 cut(s) 299, 842, 947
AsuNHI GCTAGC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 2 cut(s) 84, 244
BbvI GCAGC 1 cut(s) 634
BccI CCATC 6 cut(s) 197, 278, 418, 968, 1130, 1236
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 4 cut(s) 167, 797, 951, 1241
BcnI CCSGG 1 cut(s) 1267
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 4 cut(s) 257, 528, 806, 1232
BfoI RGCGCY 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 1240
BglI GCCNNNNNGGC 1 cut(s) 1103
BisI GCNGC 2 cut(s) 12, 648
BlsI GCNGC 2 cut(s) 13, 649
Bme1390I CCNGG 5 cut(s) 167, 797, 951, 1241, 1267
BmgT120I GGNCC 1 cut(s) 1268
BmiI GGNNCC 3 cut(s) 40, 1277, 1357
BmrFI CCNGG 5 cut(s) 167, 797, 951, 1241, 1267
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 3 cut(s) 49, 393, 554
BmtI GCTAGC 1 cut(s) 809
BmuI ACTGGG 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 314
Bpu10I CCTNAGC 2 cut(s) 84, 244
BpuMI CCSGG 1 cut(s) 1267
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 5 cut(s) 683, 1149, 1240, 1271, 1304
BsaXI ACNNNNNCTCC 2 cut(s) 1236, 1266
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 1031, 1032, 1272
Bse1I ACTGG 4 cut(s) 114, 197, 596, 646
BseBI CCWGG 4 cut(s) 167, 797, 951, 1241
BseDI CCNNGG 5 cut(s) 683, 1149, 1240, 1271, 1304
BseGI GGATG 4 cut(s) 64, 384, 410, 571
BseLI CCNNNNNNNGG 4 cut(s) 203, 1031, 1032, 1272
BseMII CTCAG 7 cut(s) 98, 258, 540, 552, 617, 748, 1181
BseNI ACTGG 4 cut(s) 114, 197, 596, 646
BsePI GCGCGC 1 cut(s) 778
BseRI GAGGAG 4 cut(s) 146, 149, 566, 1205
BseXI GCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 1268
Bsh1236I CGCG 4 cut(s) 780, 782, 1015, 1361
BshFI GGCC 3 cut(s) 82, 1046, 1270
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 1266
BslFI GGGAC 3 cut(s) 231, 593, 1348
BslI CCNNNNNNNGG 4 cut(s) 203, 1031, 1032, 1272
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 3 cut(s) 231, 593, 1348
BsnI GGCC 3 cut(s) 82, 1046, 1270
Bsp1286I GDGCHC 2 cut(s) 51, 1119
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
Bsp19I CCATGG 2 cut(s) 1271, 1304
BspACI CCGC 5 cut(s) 9, 12, 32, 782, 1359
BspANI GGCC 3 cut(s) 82, 1046, 1270
BspCNI CTCAG 7 cut(s) 97, 257, 541, 553, 618, 747, 1180
BspFNI CGCG 4 cut(s) 780, 782, 1015, 1361
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 3 cut(s) 40, 1277, 1357
BspMI ACCTGC 1 cut(s) 1240
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 5 cut(s) 214, 807, 881, 939, 1182
BspT107I GGYRCC 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 4 cut(s) 114, 197, 596, 646
BssECI CCNNGG 5 cut(s) 683, 1149, 1240, 1271, 1304
BssHII GCGCGC 1 cut(s) 778
BssMI GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 3 cut(s) 683, 1271, 1304
Bst2UI CCWGG 4 cut(s) 167, 797, 951, 1241
Bst4CI ACNGT 5 cut(s) 623, 661, 863, 1030, 1040
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 185, 644
BstAUI TGTACA 1 cut(s) 91
BstC8I GCNNGC 4 cut(s) 753, 780, 807, 1063
BstDEI CTNAG 9 cut(s) 84, 213, 244, 549, 561, 626, 734, 1120, 1167
BstDSI CCRYGG 2 cut(s) 1271, 1304
BstEII GGTNACC 3 cut(s) 953, 1235, 1261
BstF5I GGATG 4 cut(s) 64, 384, 410, 571
BstFNI CGCG 4 cut(s) 780, 782, 1015, 1361
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 4 cut(s) 41, 780, 782, 1015
BstKTI GATC 6 cut(s) 146, 209, 802, 889, 934, 1177
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
BstMWI GCNNNNNNNGC 5 cut(s) 31, 185, 644, 779, 1103
BstNI CCWGG 4 cut(s) 167, 797, 951, 1241
BstNSI RCATGY 2 cut(s) 92, 1300
BstPI GGTNACC 3 cut(s) 953, 1235, 1261
BstSCI CCNGG 5 cut(s) 165, 795, 949, 1239, 1265
BstUI CGCG 4 cut(s) 780, 782, 1015, 1361
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 3 cut(s) 799, 886, 931
BstYI RGATCY 3 cut(s) 799, 886, 931
BsuRI GGCC 3 cut(s) 82, 1046, 1270
BtgI CCRYGG 2 cut(s) 1271, 1304
BtsCI GGATG 4 cut(s) 64, 384, 410, 571
BtsIMutI CAGTG 2 cut(s) 868, 1026
BveI ACCTGC 1 cut(s) 1240
Cac8I GCNNGC 4 cut(s) 753, 780, 807, 1063
CaiI CAGNNNCTG 4 cut(s) 185, 317, 802, 890
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 4 cut(s) 41, 780, 782, 1015
Cfr13I GGNCC 1 cut(s) 1268
Csp6I GTAC 4 cut(s) 92, 630, 899, 1036
CviQI GTAC 4 cut(s) 92, 630, 899, 1036
DdeI CTNAG 9 cut(s) 84, 213, 244, 549, 561, 626, 734, 1120, 1167
DinI GGCGCC 1 cut(s) 40
DpnI GATC 6 cut(s) 145, 208, 801, 888, 933, 1176
DpnII GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 3 cut(s) 683, 1271, 1304
Eco147I AGGCCT 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 1119
Eco32I GATATC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 1107
Eco91I GGTNACC 3 cut(s) 953, 1235, 1261
EcoO65I GGTNACC 3 cut(s) 953, 1235, 1261
EcoRII CCWGG 4 cut(s) 165, 795, 949, 1239
EcoRV GATATC 1 cut(s) 101
EcoT14I CCWWGG 3 cut(s) 683, 1271, 1304
EcoT38I GRGCYC 1 cut(s) 1119
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 3 cut(s) 683, 1271, 1304
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FaqI GGGAC 3 cut(s) 231, 593, 1348
FauI CCCGC 1 cut(s) 39
FauNDI CATATG 1 cut(s) 1009
Fnu4HI GCNGC 2 cut(s) 12, 648
FokI GGATG 4 cut(s) 71, 371, 397, 578
FriOI GRGCYC 1 cut(s) 1119
Fsp4HI GCNGC 2 cut(s) 12, 648
FspBI CTAG 4 cut(s) 257, 528, 806, 1232
GlaI GCGC 4 cut(s) 40, 779, 781, 1014
GluI GCNGC 2 cut(s) 12, 648
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 82, 1046, 1270
HapII CCGG 1 cut(s) 1266
HhaI GCGC 4 cut(s) 41, 780, 782, 1015
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 4 cut(s) 39, 778, 780, 1013
HinP1I GCGC 4 cut(s) 39, 778, 780, 1013
HincII GTYRAC 2 cut(s) 879, 1225
HindII GTYRAC 2 cut(s) 879, 1225
HinfI GANTC 8 cut(s) 182, 260, 320, 430, 557, 671, 854, 1163
HpaII CCGG 1 cut(s) 1266
HphI GGTGA 3 cut(s) 299, 842, 947
Hpy166II GTNNAC 2 cut(s) 879, 1225
Hpy188III TCNNGA 5 cut(s) 104, 521, 602, 965, 1291
Hpy8I GTNNAC 2 cut(s) 879, 1225
HpyAV CCTTC 4 cut(s) 425, 621, 763, 922
HpyCH4III ACNGT 5 cut(s) 623, 661, 863, 1030, 1040
HpyCH4IV ACGT 1 cut(s) 1337
HpyCH4V TGCA 4 cut(s) 638, 1007, 1201, 1249
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 185, 644, 779, 1103
HpyF3I CTNAG 9 cut(s) 84, 213, 244, 549, 561, 626, 734, 1120, 1167
HpySE526I ACGT 1 cut(s) 1337
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 4 cut(s) 39, 778, 780, 1013
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 3 cut(s) 49, 393, 554
MaeI CTAG 4 cut(s) 257, 528, 806, 1232
MaeII ACGT 1 cut(s) 1337
MaeIII GTNAC 5 cut(s) 299, 617, 953, 1235, 1261
MalI GATC 6 cut(s) 145, 208, 801, 888, 933, 1176
MbiI CCGCTC 1 cut(s) 34
MboI GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
MboII GAAGA 9 cut(s) 140, 319, 466, 469, 472, 983, 1100, 1315, 1333
MflI RGATCY 3 cut(s) 799, 886, 931
MhlI GDGCHC 2 cut(s) 51, 1119
MluCI AATT 8 cut(s) 191, 265, 466, 495, 695, 872, 1051, 1217
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 2 cut(s) 191, 254
MmeI TCCRAC 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 296, 1109
MslI CAYNNNNRTG 1 cut(s) 1295
MspI CCGG 1 cut(s) 1266
MspR9I CCNGG 5 cut(s) 167, 797, 951, 1241, 1267
MvaI CCWGG 4 cut(s) 167, 797, 951, 1241
MvnI CGCG 4 cut(s) 780, 782, 1015, 1361
MwoI GCNNNNNNNGC 5 cut(s) 31, 185, 644, 779, 1103
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 1267
NcoI CCATGG 2 cut(s) 1271, 1304
NdeI CATATG 1 cut(s) 1009
NdeII GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
NheI GCTAGC 1 cut(s) 805
NlaIV GGNNCC 3 cut(s) 40, 1277, 1357
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 3 cut(s) 299, 617, 953
NspI RCATGY 2 cut(s) 92, 1300
PagI TCATGA 1 cut(s) 1290
PaqCI CACCTGC 1 cut(s) 1240
PauI GCGCGC 1 cut(s) 778
PceI AGGCCT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 6 cut(s) 320, 430, 557, 671, 854, 1163
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 2 cut(s) 13, 649
PleI GAGTC 2 cut(s) 190, 254
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 2 cut(s) 190, 254
Psp6I CCWGG 4 cut(s) 165, 795, 949, 1239
PspEI GGTNACC 3 cut(s) 953, 1235, 1261
PspGI CCWGG 4 cut(s) 165, 795, 949, 1239
PspN4I GGNNCC 3 cut(s) 40, 1277, 1357
PspPI GGNCC 1 cut(s) 1268
PstNI CAGNNNCTG 4 cut(s) 185, 317, 802, 890
PsuI RGATCY 3 cut(s) 799, 886, 931
PteI GCGCGC 1 cut(s) 778
RsaI GTAC 4 cut(s) 93, 631, 900, 1037
RsaNI GTAC 4 cut(s) 92, 630, 899, 1036
RseI CAYNNNNRTG 1 cut(s) 1295
SaqAI TTAA 2 cut(s) 296, 1109
SatI GCNGC 2 cut(s) 12, 648
Sau3AI GATC 6 cut(s) 143, 206, 799, 886, 931, 1174
Sau96I GGNCC 1 cut(s) 1268
SchI GAGTC 2 cut(s) 191, 254
ScrFI CCNGG 5 cut(s) 167, 797, 951, 1241, 1267
SduI GDGCHC 2 cut(s) 51, 1119
SfaNI GCATC 3 cut(s) 49, 393, 554
SfoI GGCGCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 1295
Sse9I AATT 8 cut(s) 191, 265, 466, 495, 695, 872, 1051, 1217
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 5 cut(s) 9, 12, 32, 782, 1359
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 4 cut(s) 257, 528, 806, 1232
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 5 cut(s) 165, 795, 949, 1239, 1265
StyI CCWWGG 3 cut(s) 683, 1271, 1304
TaaI ACNGT 5 cut(s) 623, 661, 863, 1030, 1040
TaiI ACGT 1 cut(s) 1340
TaqI TCGA 4 cut(s) 103, 237, 614, 940
TasI AATT 8 cut(s) 191, 265, 466, 495, 695, 872, 1051, 1217
TatI WGTACW 2 cut(s) 91, 629
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 6 cut(s) 320, 430, 557, 671, 854, 1163
Tru1I TTAA 2 cut(s) 296, 1109
Tru9I TTAA 2 cut(s) 296, 1109
TscAI CASTG 2 cut(s) 868, 1033
TseFI GTSAC 3 cut(s) 299, 617, 953
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 3 cut(s) 299, 617, 953
TspDTI ATGAA 6 cut(s) 17, 407, 984, 1064, 1279, 1307
TspRI CASTG 2 cut(s) 868, 1033
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 2 cut(s) 92, 1300
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 4 cut(s) 257, 528, 806, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.