Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006066

Physical Location & Seq

Genomic Coordinates Reverse (-)

23364054 .. 23365256

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1120200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGATATCGGAATACTTGGCAGAAATGGAAGCTACAAGTACACCAAGTGTTATGGAAAAGCTGATGGGCCTTAATGGCTTGCCGCCTCAGGTGCCTGTCCAAAAACAAAGAAGAGTGCCGTCTGAGAATTACCTACACAGAGTTGCTTCCATTGGTGCCAGAGAGTCTCGTCATTCATTCAGGTTGAGAGTACTGGAAATTATGGATTATGAGGGTGATCATGTCGCGGCATGTCTCCCGAGGGGCAGTTCTTTGATCAGCGAGCATCAGCATAATCTGCAAGTTTCCCCTTCGACATGTACTTCTGGCAGTGGAAATGTTTATATATGCAGGAAATCCGGGAGGAGATATGAGCTGCCAAATGCCACTTTACTTGAGACGTTTGAGAATGGAATTGGCACAGAATCCCTTGGAGAAGTTGGACTCTTAAATTTAGATGATTTTTCAAGATCGCAATTGGGGTTGAACAAAGAAGGATGCATTCTTAGTGGTAGATTTGTAGTCTTGAAACCAGGGCATGGAAAGGCTGAGAATTCTGCTAGATGTTTCCCTTCTTTTAGTTCCCTTGATGTTTCTCATTCCAGTGATCGAAAGTGCACGGAGTTTTCTAGTCCTGGTAGTGTGAAAATACATGTTGAAGTAAAAGAAGGGAAGAACTTGGCATTTGACATGGAACTAGTAAGCTTAAGGTCTACAGTTTTGAGGGAAATATTGGGTAAGCTAACTGAAAATACAAGTTGCAACAAAACCAACATTGGTACAAAGGTATCACGGTTAAGATCCAGAGGTGGCAACTCAGTTGCAATGAAAACTAAATCAATGAGGCTGTCTTCCTCAAGATACCAGTCCTTTTCTTATTCAGACGAGTCATATGAATCTCGGGAAGCCAAAAAGCAACTCTCAGAACGACGGAAGATGATTAATAAGCCGGAAGAAGCAGGAATGGCTCGTAGAGGCGCTACCCTCAGGAATTCGCTTGCCCTGTCTGCCCACGAAACAGGCTCAAGAACATTGGATCACAATCTTGTTAGGCATCTTCAACCGAAAAGAAAGCTCATTAGGAATGACCTGAAAGACCTAGACCTCAGTAAGTTTAGAGCACAACAAGATAAATATGCAGCTCTTTGCAATGAGTGGAGTTTCAAGCCAAAATGGTCTATTAATTTGGGGCAGCACAAGTCAAGGGAGTACAAATTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

401

Amino Acids

44.89

Weight (kDa)

9.58

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435
fragaria_vesca	FvH4_7g21020
malus_domestica	MD01G1120100.v1.1 MD01G1120200.v1.1 MD07G1189400.v1.1
prunus_persica	Prupe.2G227000_v2.0.a1 Prupe.2G227000_v2.0.a1
pyrus_communis	pycom01g14670 pycom07g17920
rosa_chinensis	RchiOBHm_Chr1g0365411
rosa_laevigata	RLG00000027424
rosa_multiflora	Rmu_sc0008527.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291250
rosa_rugosa	Rorug01G0321700 Rorug01G0321800 Rorug01G0321900 Rorug01G0322000
rosa_samantha	Rh1AG330700 Rh1BG292200 Rh1CG308700 Rh1DG323800
rosa_wichuraiana	Rw1G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	91, 155
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	692
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	83, 227
AclWI	GGATC	2 cut(s)	774, 1023
AcsI	RAATTY	4 cut(s)	430, 532, 970, 1193
AdeI	CACNNNGTG	1 cut(s)	47
AfaI	GTAC	5 cut(s)	40, 192, 301, 760, 1190
AfiI	CCNNNNNNNGG	1 cut(s)	518
AflII	CTTAAG	1 cut(s)	685
AflIII	ACRYGT	2 cut(s)	296, 631
AgsI	TTSAA	7 cut(s)	447, 466, 508, 638, 1040, 1144, 1198
AhlI	ACTAGT	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	511, 613
AluBI	AGCT	7 cut(s)	32, 61, 355, 684, 721, 1054, 1121
AluI	AGCT	7 cut(s)	32, 61, 355, 684, 721, 1054, 1121
Alw21I	GWGCWC	2 cut(s)	599, 1102
Alw26I	GTCTC	3 cut(s)	171, 239, 371
Alw44I	GTGCAC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	774, 1023
Ama87I	CYCGRG	2 cut(s)	238, 879
AoxI	GGCC	1 cut(s)	67
ApaLI	GTGCAC	1 cut(s)	595
ApeKI	GCWGC	3 cut(s)	355, 1118, 1171
ApoI	RAATTY	4 cut(s)	430, 532, 970, 1193
AseI	ATTAAT	2 cut(s)	921, 1161
AspLEI	GCGC	1 cut(s)	959
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	2 cut(s)	238, 879
AxyI	CCTNAGG	2 cut(s)	87, 965
BaeGI	GKGCMC	1 cut(s)	599
BaeI	ACNNNNGTAYC	4 cut(s)	750, 750, 783, 783
BanI	GGYRCC	2 cut(s)	91, 155
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	599, 1102
BbvI	GCAGC	3 cut(s)	342, 1130, 1183
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	513, 615
BclI	TGATCA	2 cut(s)	217, 255
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	171, 239, 371
BcuI	ACTAGT	1 cut(s)	676
BfaI	CTAG	5 cut(s)	540, 609, 677, 1079, 1201
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	960
BfrI	CTTAAG	1 cut(s)	685
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	5 cut(s)	83, 228, 356, 1119, 1172
BlsI	GCNGC	5 cut(s)	84, 229, 357, 1120, 1173
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	3 cut(s)	340, 513, 615
BmeT110I	CYCGRG	2 cut(s)	238, 879
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	93, 157
BmrFI	CCNGG	3 cut(s)	340, 513, 615
BmsI	GCATC	3 cut(s)	274, 467, 1042
BpiI	GAAGAC	1 cut(s)	822
BpuEI	CTTGAG	3 cut(s)	395, 820, 988
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaJI	CCNNGG	3 cut(s)	239, 409, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	3 cut(s)	198, 582, 844
Bse21I	CCTNAGG	2 cut(s)	87, 965
Bse3DI	GCAATG	2 cut(s)	810, 1135
Bse8I	GATNNNNATC	1 cut(s)	1020
BseBI	CCWGG	2 cut(s)	513, 615
BseDI	CCNNGG	3 cut(s)	239, 409, 512
BseGI	GGATG	1 cut(s)	482
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	2 cut(s)	810, 1135
BseMII	CTCAG	7 cut(s)	101, 114, 519, 810, 915, 979, 1099
BseNI	ACTGG	3 cut(s)	198, 582, 844
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	342, 1130, 1183
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	2 cut(s)	91, 155
BsiHKAI	GWGCWC	2 cut(s)	599, 1102
BsiHKCI	CYCGRG	2 cut(s)	238, 879
BsiSI	CCGG	2 cut(s)	339, 929
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	3 cut(s)	171, 239, 371
BsmBI	CGTCTC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	2 cut(s)	238, 879
Bsp1286I	GDGCHC	2 cut(s)	599, 1102
Bsp143I	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
BspACI	CCGC	2 cut(s)	83, 227
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	7 cut(s)	100, 115, 520, 809, 914, 978, 1098
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	93, 157
BspPI	GGATC	2 cut(s)	774, 1023
BspT107I	GGYRCC	2 cut(s)	91, 155
BspTI	CTTAAG	1 cut(s)	685
BsrDI	GCAATG	2 cut(s)	810, 1135
BsrI	ACTGG	3 cut(s)	198, 582, 844
BssECI	CCNNGG	3 cut(s)	239, 409, 512
BssMI	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	513, 615
Bst4CI	ACNGT	2 cut(s)	697, 774
Bst6I	CTCTTC	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	80, 263, 978
BstDEI	CTNAG	8 cut(s)	87, 123, 485, 528, 796, 901, 965, 1085
BstF5I	GGATG	1 cut(s)	482
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	960
BstHHI	GCGC	1 cut(s)	959
BstKTI	GATC	6 cut(s)	220, 258, 452, 589, 782, 1018
BstMAI	GTCTC	3 cut(s)	171, 239, 371
BstMBI	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 91, 277, 944, 986
BstNI	CCWGG	2 cut(s)	513, 615
BstNSI	RCATGY	3 cut(s)	234, 300, 635
BstSCI	CCNGG	3 cut(s)	338, 511, 613
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	599
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	342, 1130, 1183
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
Bsu36I	CCTNAGG	2 cut(s)	87, 965
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	482
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	316, 589
Cac8I	GCNNGC	3 cut(s)	80, 263, 978
CfoI	GCGC	1 cut(s)	959
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	5 cut(s)	39, 191, 300, 759, 1189
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	6 cut(s)	221, 231, 297, 518, 632, 670
CviQI	GTAC	5 cut(s)	39, 191, 300, 759, 1189
DdeI	CTNAG	8 cut(s)	87, 123, 485, 528, 796, 901, 965, 1085
DpnI	GATC	6 cut(s)	219, 257, 451, 588, 781, 1017
DpnII	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
DraIII	CACNNNGTG	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	6
Eco81I	CCTNAGG	2 cut(s)	87, 965
Eco88I	CYCGRG	2 cut(s)	238, 879
EcoRI	GAATTC	2 cut(s)	532, 970
EcoRII	CCWGG	2 cut(s)	511, 613
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	6 cut(s)	224, 234, 300, 521, 635, 673
FatI	CATG	6 cut(s)	220, 230, 296, 517, 631, 669
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	2 cut(s)	217, 255
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	5 cut(s)	83, 228, 356, 1119, 1172
FokI	GGATG	1 cut(s)	489
Fsp4HI	GCNGC	5 cut(s)	83, 228, 356, 1119, 1172
FspBI	CTAG	5 cut(s)	540, 609, 677, 1079, 1201
GlaI	GCGC	1 cut(s)	958
GluI	GCNGC	5 cut(s)	83, 228, 356, 1119, 1172
HaeII	RGCGCY	1 cut(s)	960
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	339, 929
HhaI	GCGC	1 cut(s)	959
Hin1II	CATG	6 cut(s)	224, 234, 300, 521, 635, 673
Hin6I	GCGC	1 cut(s)	957
HinP1I	GCGC	1 cut(s)	957
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	5 cut(s)	164, 404, 423, 866, 875
HpaII	CCGG	2 cut(s)	339, 929
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	41, 597, 693
Hpy188I	TCNGA	4 cut(s)	10, 124, 862, 904
Hpy188III	TCNNGA	8 cut(s)	238, 447, 505, 783, 837, 881, 967, 1005
Hpy8I	GTNNAC	3 cut(s)	41, 597, 693
Hpy99I	CGWCG	1 cut(s)	912
HpyAV	CCTTC	4 cut(s)	300, 467, 561, 641
HpyCH4III	ACNGT	2 cut(s)	697, 774
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	8 cut(s)	280, 330, 480, 597, 741, 803, 1118, 1128
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 91, 277, 944, 986
HpyF3I	CTNAG	8 cut(s)	87, 123, 485, 528, 796, 901, 965, 1085
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	6 cut(s)	224, 234, 300, 521, 635, 673
HspAI	GCGC	1 cut(s)	957
Ksp22I	TGATCA	2 cut(s)	217, 255
Kzo9I	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
Lsp1109I	GCAGC	3 cut(s)	342, 1130, 1183
LweI	GCATC	3 cut(s)	274, 467, 1042
MaeI	CTAG	5 cut(s)	540, 609, 677, 1079, 1201
MaeII	ACGT	1 cut(s)	380
MalI	GATC	6 cut(s)	219, 257, 451, 588, 781, 1017
MboI	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
MboII	GAAGA	6 cut(s)	123, 664, 822, 925, 944, 1028
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	2 cut(s)	599, 1102
MluCI	AATT	9 cut(s)	127, 198, 393, 430, 455, 532, 970, 1162, 1193
MlyI	GAGTC	3 cut(s)	173, 417, 875
MmeI	TCCRAC	1 cut(s)	400
Mph1103I	ATGCAT	1 cut(s)	482
MseI	TTAA	6 cut(s)	72, 428, 686, 776, 921, 1161
MslI	CAYNNNNRTG	1 cut(s)	582
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	2 cut(s)	339, 929
MspR9I	CCNGG	3 cut(s)	340, 513, 615
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	2 cut(s)	513, 615
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	75, 91, 277, 944, 986
NciI	CCSGG	1 cut(s)	340
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
NlaIII	CATG	6 cut(s)	224, 234, 300, 521, 635, 673
NlaIV	GGNNCC	2 cut(s)	93, 157
NsiI	ATGCAT	1 cut(s)	482
NspI	RCATGY	3 cut(s)	234, 300, 635
PciI	ACATGT	2 cut(s)	296, 631
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	404, 875
PflMI	CCANNNNNTGG	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	84, 229, 357, 1120, 1173
PleI	GAGTC	3 cut(s)	172, 417, 874
PpsI	GAGTC	3 cut(s)	172, 417, 874
PscI	ACATGT	2 cut(s)	296, 631
PshBI	ATTAAT	2 cut(s)	921, 1161
Psp6I	CCWGG	2 cut(s)	511, 613
PspGI	CCWGG	2 cut(s)	511, 613
PspN4I	GGNNCC	2 cut(s)	93, 157
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	779
RsaI	GTAC	5 cut(s)	40, 192, 301, 760, 1190
RsaNI	GTAC	5 cut(s)	39, 191, 300, 759, 1189
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	6 cut(s)	72, 428, 686, 776, 921, 1161
SatI	GCNGC	5 cut(s)	83, 228, 356, 1119, 1172
Sau3AI	GATC	6 cut(s)	217, 255, 449, 586, 779, 1015
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	3 cut(s)	173, 417, 875
ScrFI	CCNGG	3 cut(s)	340, 513, 615
SduI	GDGCHC	2 cut(s)	599, 1102
SfaNI	GCATC	3 cut(s)	274, 467, 1042
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	4 cut(s)	374, 685, 835, 1003
SmoI	CTYRAG	4 cut(s)	374, 685, 835, 1003
SpeI	ACTAGT	1 cut(s)	676
Sse9I	AATT	9 cut(s)	127, 198, 393, 430, 455, 532, 970, 1162, 1193
SsiI	CCGC	2 cut(s)	83, 227
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	5 cut(s)	540, 609, 677, 1079, 1201
StyD4I	CCNGG	3 cut(s)	338, 511, 613
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	697, 774
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	2 cut(s)	293, 589
TasI	AATT	9 cut(s)	127, 198, 393, 430, 455, 532, 970, 1162, 1193
TatI	WGTACW	4 cut(s)	38, 190, 299, 1188
TauI	GCSGC	2 cut(s)	85, 230
TfiI	GAWTC	2 cut(s)	404, 875
Tru1I	TTAA	6 cut(s)	72, 428, 686, 776, 921, 1161
Tru9I	TTAA	6 cut(s)	72, 428, 686, 776, 921, 1161
TscAI	CASTG	2 cut(s)	316, 589
TseI	GCWGC	3 cut(s)	355, 1118, 1171
TspDTI	ATGAA	3 cut(s)	165, 821, 888
TspGWI	ACGGA	2 cut(s)	614, 925
TspRI	CASTG	2 cut(s)	316, 589
Van91I	CCANNNNNTGG	1 cut(s)	518
Vha464I	CTTAAG	1 cut(s)	685
VneI	GTGCAC	1 cut(s)	595
VspI	ATTAAT	2 cut(s)	921, 1161
XapI	RAATTY	4 cut(s)	430, 532, 970, 1193
XceI	RCATGY	3 cut(s)	234, 300, 635
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	5 cut(s)	540, 609, 677, 1079, 1201
ZrmI	AGTACT	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.