Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Forward (+)

44072161 .. 44076126

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTTGAAGAAAAAGAAGCATCTTGATCTCCAACGACTCCCTGAACATGTTGTATTCAGCATTCTCTGCCGGCTGCCAGTGAAGTCCTTGATCCGCTTCACTTGTGTCTCAAAACGGTGGCGTTCTGTTATAATTTCCGACCACCAATTTGGCAACTCCCATTTTCAACTAGCAGCATCTCAGCTCCGTCATAATGTCCTCATCTCCAGGTCCCCTGACTACATTTCAGAAGGTACACAATTTCAATCCTTAGAAGATAACTTTTCGATCAAAAATCTCACCTGCCCATTCCAGCGGTATAGCACAATTCAAGTAATGGGCTCTTGCAATGGTTTGGTAGTTTTAGCTAATTTCTATCCCAATGTTTTGAGCTATTGGCCTTGTTGTCTTCGCGATCGTTATAACATTTTAGTAATGCGGAACCCATCAACTGGATTCTTCCGCAAGATACCTTATCCAAATTTTCAAATTGGGAGCAAAAAATGGACACTTGAAAATAAAGAGATCCGTGTGTATTATGGTTTTGGTCAAGTGTCGGCCTCCAACGACTACAAACTTGTGGTGATACTAAATTATGGTGGTTTCATGGAAGTACGTGTGTTCTCAGTCAGAGCCAACTGTTGGAAAGTTGTTAAAGCTCCTTACTTGTCACCATACCGCCCCTGGTCTGAAGAATTGGGGACTTACTCAAATGGAGCAATTCATTGGGTCAGTCTCCATGAACCTGGTTTTTTGGAGCCACCTGTCTATGCTTTTGATCTCGCAAATGAGGAGTTTCGGGAAATGCCATTGCCTGTTCTTAGCCATAATGAATATGGCATGCAAATGACGCAAACAAGAACTCCAGTTCTTTTAGGAGGATGTCTTTGTGTGATGTTTCAGGATGCTGACAAGAACAGTGAATTTTGGGCGATGAAAGATTATGGGCTGCCTGAATCTTGGGTTAAACTCTTTGGGTTTAAGCTACGTGATTTACCGGATGTGTTTAATTCATTCTTTAGCATCTTTTTCTGGAATCCTATTTACATTGCAGAAGACGGTACAGTTGTGATCAAAGTGCCTTCCAAGATGGAGGTGATCAGGTTTAAATGCCGTAAAGAAGAGAAGCCGGTCTGCACCGACCGGTACCGTCTTGAGGAGCTGCTGCCATGTAAGGATGACTATGATCCCTGTAACCACACAAAAAAGTATCTATTTAGTGCCATTTTGTATGATGAAACTCTAGTTTCGATACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

413

Amino Acids

48.19

Weight (kDa)

8.65

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 47	7.9e-10	F-box domain
F-box-like	PF12937	11 - 47	3e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	131, 402
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	1125
AccB1I	GGYRCC	1 cut(s)	1125
AccB7I	CCANNNNNTGG	2 cut(s)	431, 621
AccII	CGCG	1 cut(s)	393
AciI	CCGC	5 cut(s)	94, 295, 418, 442, 658
AclWI	GGATC	3 cut(s)	85, 499, 1160
AcsI	RAATTY	2 cut(s)	460, 902
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	4 cut(s)	235, 594, 1042, 1127
AfiI	CCNNNNNNNGG	3 cut(s)	431, 621, 1135
AflIII	ACRYGT	2 cut(s)	46, 595
AgeI	ACCGGT	1 cut(s)	1122
AgsI	TTSAA	6 cut(s)	7, 167, 245, 311, 467, 494
AjnI	CCWGG	3 cut(s)	206, 662, 724
AluBI	AGCT	6 cut(s)	184, 347, 372, 638, 964, 1141
AluI	AGCT	6 cut(s)	184, 347, 372, 638, 964, 1141
Alw26I	GTCTC	2 cut(s)	112, 719
AlwI	GGATC	3 cut(s)	85, 499, 1160
AoxI	GGCC	2 cut(s)	377, 537
ApeKI	GCWGC	5 cut(s)	73, 173, 928, 1141, 1144
ApoI	RAATTY	2 cut(s)	460, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AsiGI	ACCGGT	1 cut(s)	1122
Asp718I	GGTACC	1 cut(s)	1125
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	4 cut(s)	271, 574, 642, 1087
AvaII	GGWCC	1 cut(s)	210
BaeI	ACNNNNGTAYC	2 cut(s)	1032, 1065
BanI	GGYRCC	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	380, 1041
BbvI	GCAGC	5 cut(s)	60, 185, 915, 1128, 1131
BccI	CCATC	2 cut(s)	433, 1063
BceAI	ACGGC	1 cut(s)	1077
BciT130I	CCWGG	3 cut(s)	208, 664, 726
BclI	TGATCA	2 cut(s)	1050, 1077
BcoDI	GTCTC	2 cut(s)	112, 719
BfaI	CTAG	2 cut(s)	170, 1223
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	5 cut(s)	74, 174, 929, 1142, 1145
BlsI	GCNGC	5 cut(s)	75, 175, 930, 1143, 1146
Bme1390I	CCNGG	3 cut(s)	208, 664, 726
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	4 cut(s)	212, 422, 738, 1127
BmrFI	CCNGG	3 cut(s)	208, 664, 726
BmsI	GCATC	4 cut(s)	28, 185, 874, 1011
BpiI	GAAGAC	2 cut(s)	380, 1041
BpmI	CTGGAG	2 cut(s)	190, 828
BpuEI	CTTGAG	1 cut(s)	1154
BsaAI	YACGTR	2 cut(s)	596, 968
BsaJI	CCNNGG	1 cut(s)	662
BsaWI	WCCGGW	2 cut(s)	976, 1122
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 621, 1135
Bse118I	RCCGGY	3 cut(s)	69, 1108, 1122
Bse1I	ACTGG	3 cut(s)	77, 436, 845
Bse3DI	GCAATG	3 cut(s)	334, 788, 1026
BseBI	CCWGG	3 cut(s)	208, 664, 726
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	4 cut(s)	866, 889, 985, 1162
BseLI	CCNNNNNNNGG	3 cut(s)	431, 621, 1135
BseMI	GCAATG	3 cut(s)	334, 788, 1026
BseMII	CTCAG	2 cut(s)	194, 618
BseNI	ACTGG	3 cut(s)	77, 436, 845
BseRI	GAGGAG	2 cut(s)	785, 1151
BseXI	GCAGC	5 cut(s)	60, 185, 915, 1128, 1131
BsgI	GTGCAG	1 cut(s)	1099
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	2 cut(s)	397, 1123
BshFI	GGCC	2 cut(s)	379, 539
BshNI	GGYRCC	1 cut(s)	1125
BshTI	ACCGGT	1 cut(s)	1122
BsiEI	CGRYCG	2 cut(s)	397, 1123
BsiSI	CCGG	4 cut(s)	70, 977, 1109, 1123
BslFI	GGGAC	2 cut(s)	196, 694
BslI	CCNNNNNNNGG	3 cut(s)	431, 621, 1135
BsmAI	GTCTC	2 cut(s)	112, 719
BsmFI	GGGAC	2 cut(s)	196, 694
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	379, 539
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
Bsp68I	TCGCGA	1 cut(s)	393
BspACI	CCGC	5 cut(s)	94, 295, 418, 442, 658
BspANI	GGCC	2 cut(s)	379, 539
BspCNI	CTCAG	2 cut(s)	193, 617
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	4 cut(s)	212, 422, 738, 1127
BspMI	ACCTGC	1 cut(s)	290
BspPI	GGATC	3 cut(s)	85, 499, 1160
BspT107I	GGYRCC	1 cut(s)	1125
BsrDI	GCAATG	3 cut(s)	334, 788, 1026
BsrFI	RCCGGY	3 cut(s)	69, 1108, 1122
BsrI	ACTGG	3 cut(s)	77, 436, 845
BssAI	RCCGGY	3 cut(s)	69, 1108, 1122
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
Bst2UI	CCWGG	3 cut(s)	208, 664, 726
Bst4CI	ACNGT	6 cut(s)	117, 620, 899, 1040, 1045, 1130
Bst6I	CTCTTC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstBAI	YACGTR	2 cut(s)	596, 968
BstC8I	GCNNGC	2 cut(s)	71, 821
BstDEI	CTNAG	4 cut(s)	180, 250, 604, 800
BstF5I	GGATG	4 cut(s)	866, 889, 985, 1162
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	9 cut(s)	28, 93, 270, 397, 507, 760, 1053, 1080, 1168
BstMAI	GTCTC	2 cut(s)	112, 719
BstMBI	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
BstMCI	CGRYCG	2 cut(s)	397, 1123
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 829
BstNI	CCWGG	3 cut(s)	208, 664, 726
BstNSI	RCATGY	2 cut(s)	50, 823
BstSCI	CCNGG	3 cut(s)	206, 662, 724
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	5 cut(s)	60, 185, 915, 1128, 1131
BstV2I	GAAGAC	2 cut(s)	380, 1041
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	2 cut(s)	149, 725
BstYI	RGATCY	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	379, 539
BtgZI	GCGATG	1 cut(s)	926
BtsCI	GGATG	4 cut(s)	866, 889, 985, 1162
BtsIMutI	CAGTG	2 cut(s)	84, 904
BtuMI	TCGCGA	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	71, 821
Cfr10I	RCCGGY	3 cut(s)	69, 1108, 1122
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	838
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	4 cut(s)	234, 593, 1041, 1126
CspAI	ACCGGT	1 cut(s)	1122
CviAII	CATG	5 cut(s)	47, 586, 719, 820, 1149
CviQI	GTAC	4 cut(s)	234, 593, 1041, 1126
DdeI	CTNAG	4 cut(s)	180, 250, 604, 800
DpnI	GATC	9 cut(s)	27, 92, 269, 396, 506, 759, 1052, 1079, 1167
DpnII	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
DraI	TTTAAA	1 cut(s)	1087
Eam1104I	CTCTTC	1 cut(s)	1095
EarI	CTCTTC	1 cut(s)	1095
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	210
EcoRII	CCWGG	3 cut(s)	206, 662, 724
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	5 cut(s)	50, 589, 722, 823, 1152
FaqI	GGGAC	2 cut(s)	196, 694
FatI	CATG	5 cut(s)	46, 585, 718, 819, 1148
FbaI	TGATCA	2 cut(s)	1050, 1077
Fnu4HI	GCNGC	5 cut(s)	74, 174, 929, 1142, 1145
FokI	GGATG	4 cut(s)	873, 896, 992, 1169
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	5 cut(s)	74, 174, 929, 1142, 1145
FspBI	CTAG	2 cut(s)	170, 1223
GluI	GCNGC	5 cut(s)	74, 174, 929, 1142, 1145
GsuI	CTGGAG	2 cut(s)	190, 828
HaeIII	GGCC	2 cut(s)	379, 539
HapII	CCGG	4 cut(s)	70, 977, 1109, 1123
HgaI	GACGC	1 cut(s)	838
Hin1II	CATG	5 cut(s)	50, 589, 722, 823, 1152
HinfI	GANTC	4 cut(s)	36, 435, 935, 1015
HpaII	CCGG	4 cut(s)	70, 977, 1109, 1123
HphI	GGTGA	4 cut(s)	271, 574, 642, 1087
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	139, 229, 611, 670
Hpy188III	TCNNGA	6 cut(s)	23, 392, 779, 881, 1012, 1133
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	224, 1071
HpyCH4III	ACNGT	6 cut(s)	117, 620, 899, 1040, 1045, 1130
HpyCH4IV	ACGT	2 cut(s)	595, 967
HpyCH4V	TGCA	4 cut(s)	327, 823, 1031, 1116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 829
HpyF3I	CTNAG	4 cut(s)	180, 250, 604, 800
HpySE526I	ACGT	2 cut(s)	595, 967
Hsp92II	CATG	5 cut(s)	50, 589, 722, 823, 1152
KpnI	GGTACC	1 cut(s)	1129
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Ksp22I	TGATCA	2 cut(s)	1050, 1077
Kzo9I	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
LmnI	GCTCC	6 cut(s)	189, 474, 643, 695, 736, 1138
Lsp1109I	GCAGC	5 cut(s)	60, 185, 915, 1128, 1131
LweI	GCATC	4 cut(s)	28, 185, 874, 1011
MabI	ACCWGGT	1 cut(s)	724
MaeI	CTAG	2 cut(s)	170, 1223
MaeII	ACGT	2 cut(s)	595, 967
MaeIII	GTNAC	2 cut(s)	648, 1172
MalI	GATC	9 cut(s)	27, 92, 269, 396, 506, 759, 1052, 1079, 1167
MboI	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
MboII	GAAGA	7 cut(s)	19, 266, 380, 430, 683, 1046, 1112
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	4 cut(s)	55, 162, 567, 602
MnlI	CCTC	6 cut(s)	209, 550, 763, 851, 1066, 1129
MroNI	GCCGGC	1 cut(s)	69
MseI	TTAA	5 cut(s)	633, 945, 960, 987, 1086
MslI	CAYNNNNRTG	1 cut(s)	824
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	4 cut(s)	70, 977, 1109, 1123
MspR9I	CCNGG	3 cut(s)	208, 664, 726
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	3 cut(s)	208, 664, 726
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	66, 829
NaeI	GCCGGC	1 cut(s)	71
NdeII	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
NgoMIV	GCCGGC	1 cut(s)	69
NlaIII	CATG	5 cut(s)	50, 589, 722, 823, 1152
NlaIV	GGNNCC	4 cut(s)	212, 422, 738, 1127
NmuCI	GTSAC	1 cut(s)	648
NruI	TCGCGA	1 cut(s)	393
NspI	RCATGY	2 cut(s)	50, 823
PaeI	GCATGC	1 cut(s)	823
PaqCI	CACCTGC	1 cut(s)	290
PciI	ACATGT	1 cut(s)	46
PctI	GAATGC	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	435, 935, 1015
PflMI	CCANNNNNTGG	2 cut(s)	431, 621
PinAI	ACCGGT	1 cut(s)	1122
PkrI	GCNGC	5 cut(s)	75, 175, 930, 1143, 1146
Ple19I	CGATCG	1 cut(s)	397
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	2 cut(s)	596, 968
PpuMI	RGGWCCY	1 cut(s)	210
PscI	ACATGT	1 cut(s)	46
PsiI	TTATAA	2 cut(s)	131, 402
Psp5II	RGGWCCY	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	206, 662, 724
PspGI	CCWGG	3 cut(s)	206, 662, 724
PspN4I	GGNNCC	4 cut(s)	212, 422, 738, 1127
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	504
PvuI	CGATCG	1 cut(s)	397
RruI	TCGCGA	1 cut(s)	393
RsaI	GTAC	4 cut(s)	235, 594, 1042, 1127
RsaNI	GTAC	4 cut(s)	234, 593, 1041, 1126
RseI	CAYNNNNRTG	1 cut(s)	824
SaqAI	TTAA	5 cut(s)	633, 945, 960, 987, 1086
SatI	GCNGC	5 cut(s)	74, 174, 929, 1142, 1145
Sau3AI	GATC	9 cut(s)	25, 90, 267, 394, 504, 757, 1050, 1077, 1165
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	208, 664, 726
SduI	GDGCHC	1 cut(s)	323
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	4 cut(s)	28, 185, 874, 1011
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	1 cut(s)	1133
SmoI	CTYRAG	1 cut(s)	1133
SphI	GCATGC	1 cut(s)	823
SsiI	CCGC	5 cut(s)	94, 295, 418, 442, 658
SspMI	CTAG	2 cut(s)	170, 1223
StyD4I	CCNGG	3 cut(s)	206, 662, 724
TaaI	ACNGT	6 cut(s)	117, 620, 899, 1040, 1045, 1130
TaiI	ACGT	2 cut(s)	598, 970
TaqI	TCGA	2 cut(s)	266, 1229
TfiI	GAWTC	3 cut(s)	435, 935, 1015
Tru1I	TTAA	5 cut(s)	633, 945, 960, 987, 1086
Tru9I	TTAA	5 cut(s)	633, 945, 960, 987, 1086
TscAI	CASTG	2 cut(s)	84, 904
TseFI	GTSAC	1 cut(s)	648
TseI	GCWGC	5 cut(s)	73, 173, 928, 1141, 1144
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	7 cut(s)	574, 692, 735, 825, 929, 981, 1230
TspGWI	ACGGA	2 cut(s)	176, 497
TspRI	CASTG	2 cut(s)	84, 904
Van91I	CCANNNNNTGG	2 cut(s)	431, 621
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	2 cut(s)	460, 902
XceI	RCATGY	2 cut(s)	50, 823
XcmI	CCANNNNNNNNNTGG	2 cut(s)	660, 812
XspI	CTAG	2 cut(s)	170, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.