Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Reverse (-)

5813734 .. 5814633

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G086300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCAACCCGAAAGTCGATTCCCTTGCCCCTCAAGCTAAAAATCTGGCTAGTTTTTCTTGCTCTAGCCATTCCATCCATCACCCTGGCCCGAATCCTGGATGAGGAAAACCCTGCAACCCCTGAGGAACCTGATACAACTCCAACACAGACACCTCTTTCCAATGTTGCTCCTGCTGCAGCTACTAGTGCCACAGTTTCCAATTCAGAGGCCTACCATCCATTAACCTTCTTCTTGCATGACATTATTGGTGGATCAAACCCCTCAGCCAGGGCAGTCACTGGGATTGTGACCAATCCAGCAGTCAATGGCCAAGTCCCCTTTGCCAAACCCAATGGAGCAGTTGTCCCAATTGGGAATGGCATTCCTCAGAACAACAACAACAATGGAATTATCAACAACAACAATGTCCCCTTCTTCACTGGCCTTGGTGGAAACACAGCTAGCAACTTGATCCAAAACAACGGGAACAACAACATCATCGGCGGCAACGGGCTCCCATACCTAAATGGGGCTCAGCTCCCTCCAGGCATAACCCTTCAAAAGCTCATGTTTGGGACACTTACAGTGTTTGATGATGAGCTGACTGAAGGGCATGAGCTTGGCTCTGGCTTGCTTGGCAAGGCACAAGGGTTCTATGTGGCAAGTTCTGAAGATGGCAGCAGCCAGACCATTGCTTTCACTGCCATGTTTCAGAGTGGTGGTTATGCTGACAGCCTCACCTTCTTCGGTGTGCATCTCGTGGCGGCATCGGAGTCTCATCTTGCAGTCATGGGAGGCACCGGAAAGTATCTCAATGCAAAGGGCTATGCTCTGGTCAAGACCATTCCTGCTACAAATCAGCATAATACCGATGGAGTTGACACTGTGCTGCAGTTTACTGCGTATCTTACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

300

Amino Acids

31.2

Weight (kDa)

5.24

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	779
AciI	CCGC	2 cut(s)	486, 746
AclWI	GGATC	2 cut(s)	262, 448
AcoI	YGGCCR	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	609, 672
AfiI	CCNNNNNNNGG	4 cut(s)	97, 103, 270, 511
AgsI	TTSAA	1 cut(s)	542
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	4 cut(s)	84, 96, 269, 526
AluBI	AGCT	7 cut(s)	37, 182, 443, 520, 547, 583, 601
AluI	AGCT	7 cut(s)	37, 182, 443, 520, 547, 583, 601
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	2 cut(s)	262, 448
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	87, 210, 310, 424
ApeKI	GCWGC	5 cut(s)	176, 179, 660, 663, 871
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	73, 712
AsuNHI	GCTAGC	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	2 cut(s)	498, 517
BauI	CACGAG	1 cut(s)	740
BbvCI	CCTCAGC	1 cut(s)	265
BbvI	GCAGC	5 cut(s)	163, 191, 672, 675, 858
BccI	CCATC	5 cut(s)	82, 86, 225, 650, 848
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	4 cut(s)	86, 98, 271, 528
BcoDI	GTCTC	1 cut(s)	762
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	5 cut(s)	50, 65, 186, 444, 898
BfmI	CTRYAG	2 cut(s)	177, 872
BisI	GCNGC	7 cut(s)	177, 180, 487, 661, 664, 747, 872
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	7 cut(s)	178, 181, 488, 662, 665, 748, 873
Bme1390I	CCNGG	4 cut(s)	86, 98, 271, 528
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	3 cut(s)	129, 497, 781
BmrFI	CCNGG	4 cut(s)	86, 98, 271, 528
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	745, 758
BmtI	GCTAGC	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	84, 270, 427
BsaWI	WCCGGW	1 cut(s)	782
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 103, 270, 511
Bse1I	ACTGG	2 cut(s)	286, 427
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	4 cut(s)	86, 98, 271, 528
BseDI	CCNNGG	3 cut(s)	84, 270, 427
BseGI	GGATG	3 cut(s)	74, 106, 217
BseLI	CCNNNNNNNGG	4 cut(s)	97, 103, 270, 511
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	114, 279, 383, 530
BseNI	ACTGG	2 cut(s)	286, 427
BseXI	GCAGC	5 cut(s)	163, 191, 672, 675, 858
BshFI	GGCC	4 cut(s)	89, 212, 312, 426
BshNI	GGYRCC	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	4 cut(s)	302, 332, 395, 571
BslI	CCNNNNNNNGG	4 cut(s)	97, 103, 270, 511
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	4 cut(s)	302, 332, 395, 571
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	4 cut(s)	89, 212, 312, 426
Bsp1286I	GDGCHC	2 cut(s)	498, 517
Bsp143I	GATC	2 cut(s)	254, 453
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	486, 746
BspANI	GGCC	4 cut(s)	89, 212, 312, 426
BspCNI	CTCAG	4 cut(s)	115, 278, 382, 529
BspLI	GGNNCC	3 cut(s)	129, 497, 781
BspMAI	CTGCAG	2 cut(s)	181, 876
BspOI	GCTAGC	1 cut(s)	447
BspPI	GGATC	2 cut(s)	262, 448
BspT107I	GGYRCC	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	286, 427
BssECI	CCNNGG	3 cut(s)	84, 270, 427
BssMI	GATC	2 cut(s)	254, 453
BssSI	CACGAG	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	740
Bst2UI	CCWGG	4 cut(s)	86, 98, 271, 528
Bst4CI	ACNGT	3 cut(s)	196, 568, 868
BstC8I	GCNNGC	2 cut(s)	445, 614
BstDEI	CTNAG	4 cut(s)	123, 265, 369, 516
BstENI	CCTNNNNNAGG	2 cut(s)	101, 268
BstF5I	GGATG	3 cut(s)	74, 106, 217
BstKTI	GATC	2 cut(s)	257, 456
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	2 cut(s)	254, 453
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 176, 188, 618, 683
BstNI	CCWGG	4 cut(s)	86, 98, 271, 528
BstSCI	CCNGG	4 cut(s)	84, 96, 269, 526
BstSFI	CTRYAG	2 cut(s)	177, 872
BstV1I	GCAGC	5 cut(s)	163, 191, 672, 675, 858
BstXI	CCANNNNNNTGG	1 cut(s)	85
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	89, 212, 312, 426
BtsCI	GGATG	3 cut(s)	74, 106, 217
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	5 cut(s)	279, 420, 573, 681, 864
Cac8I	GCNNGC	2 cut(s)	445, 614
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	5 cut(s)	239, 550, 596, 688, 772
DdeI	CTNAG	4 cut(s)	123, 265, 369, 516
DpnI	GATC	2 cut(s)	256, 455
DpnII	GATC	2 cut(s)	254, 453
EaeI	YGGCCR	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	427
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	2 cut(s)	498, 517
Eco57I	CTGAAG	2 cut(s)	609, 672
Eco81I	CCTNAGG	1 cut(s)	123
EcoNI	CCTNNNNNAGG	2 cut(s)	101, 268
EcoRII	CCWGG	4 cut(s)	84, 96, 269, 526
EcoT14I	CCWWGG	1 cut(s)	427
EcoT38I	GRGCYC	2 cut(s)	498, 517
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	5 cut(s)	242, 553, 599, 691, 775
FaqI	GGGAC	4 cut(s)	302, 332, 395, 571
FatI	CATG	5 cut(s)	238, 549, 595, 687, 771
Fnu4HI	GCNGC	7 cut(s)	177, 180, 487, 661, 664, 747, 872
FokI	GGATG	3 cut(s)	61, 113, 204
FriOI	GRGCYC	2 cut(s)	498, 517
Fsp4HI	GCNGC	7 cut(s)	177, 180, 487, 661, 664, 747, 872
FspBI	CTAG	5 cut(s)	50, 65, 186, 444, 898
GluI	GCNGC	7 cut(s)	177, 180, 487, 661, 664, 747, 872
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	89, 212, 312, 426
HapII	CCGG	1 cut(s)	783
Hin1II	CATG	5 cut(s)	242, 553, 599, 691, 775
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HinfI	GANTC	3 cut(s)	19, 93, 755
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	2 cut(s)	73, 712
Hpy166II	GTNNAC	2 cut(s)	862, 879
Hpy188I	TCNGA	5 cut(s)	208, 372, 652, 696, 754
Hpy188III	TCNNGA	1 cut(s)	820
Hpy8I	GTNNAC	2 cut(s)	862, 879
HpyAV	CCTTC	5 cut(s)	238, 424, 548, 584, 733
HpyCH4III	ACNGT	3 cut(s)	196, 568, 868
HpyCH4V	TGCA	7 cut(s)	116, 179, 238, 736, 767, 800, 874
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 176, 188, 618, 683
HpyF3I	CTNAG	4 cut(s)	123, 265, 369, 516
Hsp92II	CATG	5 cut(s)	242, 553, 599, 691, 775
Kzo9I	GATC	2 cut(s)	254, 453
LmnI	GCTCC	4 cut(s)	175, 338, 501, 525
Lsp1109I	GCAGC	5 cut(s)	163, 191, 672, 675, 858
LweI	GCATC	2 cut(s)	745, 758
MaeI	CTAG	5 cut(s)	50, 65, 186, 444, 898
MaeIII	GTNAC	2 cut(s)	277, 289
MalI	GATC	2 cut(s)	256, 455
MboI	GATC	2 cut(s)	254, 453
MboII	GAAGA	4 cut(s)	223, 409, 665, 718
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	498, 517
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	3 cut(s)	202, 351, 390
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	167
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	4 cut(s)	86, 98, 271, 528
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	4 cut(s)	86, 98, 271, 528
MwoI	GCNNNNNNNGC	5 cut(s)	34, 176, 188, 618, 683
NdeII	GATC	2 cut(s)	254, 453
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	5 cut(s)	242, 553, 599, 691, 775
NlaIV	GGNNCC	3 cut(s)	129, 497, 781
NmuCI	GTSAC	2 cut(s)	277, 289
PceI	AGGCCT	1 cut(s)	212
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	19, 93
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	178, 181, 488, 662, 665, 748, 873
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
Psp6I	CCWGG	4 cut(s)	84, 96, 269, 526
PspGI	CCWGG	4 cut(s)	84, 96, 269, 526
PspN4I	GGNNCC	3 cut(s)	129, 497, 781
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	2 cut(s)	181, 876
PstNI	CAGNNNCTG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	7 cut(s)	177, 180, 487, 661, 664, 747, 872
Sau3AI	GATC	2 cut(s)	254, 453
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	4 cut(s)	86, 98, 271, 528
SduI	GDGCHC	2 cut(s)	498, 517
SfaNI	GCATC	2 cut(s)	745, 758
SfcI	CTRYAG	2 cut(s)	177, 872
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	3 cut(s)	202, 351, 390
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	486, 746
SspMI	CTAG	5 cut(s)	50, 65, 186, 444, 898
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	4 cut(s)	84, 96, 269, 526
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	196, 568, 868
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	202, 351, 390
TauI	GCSGC	2 cut(s)	489, 749
TfiI	GAWTC	2 cut(s)	19, 93
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	5 cut(s)	286, 427, 573, 688, 871
TseFI	GTSAC	2 cut(s)	277, 289
TseI	GCWGC	5 cut(s)	176, 179, 660, 663, 871
Tsp45I	GTSAC	2 cut(s)	277, 289
TspRI	CASTG	5 cut(s)	286, 427, 573, 688, 871
XagI	CCTNNNNNAGG	2 cut(s)	101, 268
XspI	CTAG	5 cut(s)	50, 65, 186, 444, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.