Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Forward (+)

626393 .. 627292

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAACCCGAAAGTCGATTCCCTTGCCCCTCAAGCTAAAAATCTGGCCAGAACCTGATACAACTCCAACACAGACACCTCTTTCCAATGTTGCTCCTGCTGCAGCTACTAGCGCCACAGTTTCCAATTCAGAGGCCTACCATCCATTAACCTTCTTCTTGCATGACATTATTGGTGGATCAAACCCCTCAGCCAGAGCAGTCACTGGGATTGTGACCAATCCAGCAGTCAATGGTGAAGTCCCCTTTGCCAAACCCAATGGAGCAGTTGTCCCAATTGGGAATGGCATTCCTCAGAACAACAACAACAATGGAATTATCAACAACAACAATGTCCCCTTCTTCACTGGCCTTGGTGGAAACACAGCTAGCAACTTGATCCAAAACAATGGGAACCACAACAACATCATCAGCGGCAACGGGCTCCCATACCTAAATGGGGCTCAGCTCCCTCCAGGCATAACCCTTCAAAAGCTCATGTTTGGGACACTCACAGTGTTTGATGATGAGCTGACTGAAGGGCATGAGCTTGGCTCTGGCTTGCTTGGCAAGGCACAAGGGTTCTATGTGGCAACTTCTGAAGATGGCAGCAGCCAGACCATTGCTTTCACTGCCATGTTTCAGAGTGGTGGTTATGCTGACAGCCTCACCTTCTTCGGTGTGCATCGCGTGGCGGCATCAGAGTCTCATCTTGCAGTCATGGGAGGCACCGGAAAGTATCTCAATGCAAAGGGCTATGCTCTGGTCAAGGCCATTCCTGCTACAAATCAGCATAATACCGGAGTTGACACTGTGCTGCAGTTTACTGTGTGTCTTACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent PPR PPR_2 PPR_3 Rad51

Protein Analysis

275

Amino Acids

28.55

Weight (kDa)

6.13

Isoelectric Point (pI)

24.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AccII	CGCG	1 cut(s)	669
AciI	CCGC	2 cut(s)	414, 674
AclWI	GGATC	2 cut(s)	187, 373
AcoI	YGGCCR	1 cut(s)	47
AcuI	CTGAAG	2 cut(s)	537, 600
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	7 cut(s)	37, 107, 368, 448, 475, 511, 529
AluI	AGCT	7 cut(s)	37, 107, 368, 448, 475, 511, 529
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	187, 373
AlwNI	CAGNNNCTG	2 cut(s)	56, 206
AoxI	GGCC	4 cut(s)	47, 135, 349, 750
ApeKI	GCWGC	5 cut(s)	101, 104, 588, 591, 796
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	248, 640
AsuNHI	GCTAGC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	707
BanII	GRGCYC	2 cut(s)	426, 445
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	5 cut(s)	88, 116, 600, 603, 783
BccI	CCATC	2 cut(s)	150, 578
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	3 cut(s)	111, 369, 823
BfmI	CTRYAG	2 cut(s)	102, 797
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	7 cut(s)	102, 105, 415, 589, 592, 675, 797
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	7 cut(s)	103, 106, 416, 590, 593, 676, 798
Bme1390I	CCNGG	1 cut(s)	456
BmiI	GGNNCC	3 cut(s)	395, 425, 709
BmrFI	CCNGG	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	673, 686
BmtI	GCTAGC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	190
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	2 cut(s)	710, 779
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	211, 352
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	204, 308, 458
BseNI	ACTGG	2 cut(s)	211, 352
BseXI	GCAGC	5 cut(s)	88, 116, 600, 603, 783
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	4 cut(s)	49, 137, 351, 752
BshNI	GGYRCC	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	711, 780
BslFI	GGGAC	4 cut(s)	227, 257, 320, 499
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	690
BsmFI	GGGAC	4 cut(s)	227, 257, 320, 499
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	49, 137, 351, 752
Bsp1286I	GDGCHC	2 cut(s)	426, 445
Bsp143I	GATC	2 cut(s)	179, 378
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	2 cut(s)	414, 674
BspANI	GGCC	4 cut(s)	49, 137, 351, 752
BspCNI	CTCAG	3 cut(s)	203, 307, 457
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	3 cut(s)	395, 425, 709
BspMAI	CTGCAG	2 cut(s)	106, 801
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	187, 373
BspT107I	GGYRCC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	211, 352
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	179, 378
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	121, 496, 793, 808
BstC8I	GCNNGC	2 cut(s)	370, 542
BstDEI	CTNAG	3 cut(s)	190, 294, 444
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	182, 381
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	2 cut(s)	179, 378
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 101, 113, 546, 611, 758
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	2 cut(s)	102, 797
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	5 cut(s)	88, 116, 600, 603, 783
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	49, 137, 351, 752
BtgZI	GCGATG	1 cut(s)	650
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	5 cut(s)	204, 345, 501, 609, 789
Cac8I	GCNNGC	2 cut(s)	370, 542
CaiI	CAGNNNCTG	2 cut(s)	56, 206
CfoI	GCGC	1 cut(s)	116
CviAII	CATG	5 cut(s)	164, 478, 524, 616, 700
DdeI	CTNAG	3 cut(s)	190, 294, 444
DpnI	GATC	2 cut(s)	181, 380
DpnII	GATC	2 cut(s)	179, 378
EaeI	YGGCCR	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	2 cut(s)	426, 445
Eco57I	CTGAAG	2 cut(s)	537, 600
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	426, 445
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	5 cut(s)	167, 481, 527, 619, 703
FaqI	GGGAC	4 cut(s)	227, 257, 320, 499
FatI	CATG	5 cut(s)	163, 477, 523, 615, 699
Fnu4HI	GCNGC	7 cut(s)	102, 105, 415, 589, 592, 675, 797
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	2 cut(s)	426, 445
Fsp4HI	GCNGC	7 cut(s)	102, 105, 415, 589, 592, 675, 797
FspBI	CTAG	3 cut(s)	111, 369, 823
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	7 cut(s)	102, 105, 415, 589, 592, 675, 797
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	49, 137, 351, 752
HapII	CCGG	2 cut(s)	711, 780
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	167, 481, 527, 619, 703
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	2 cut(s)	19, 683
HpaII	CCGG	2 cut(s)	711, 780
HphI	GGTGA	2 cut(s)	248, 640
Hpy166II	GTNNAC	2 cut(s)	787, 804
Hpy188I	TCNGA	5 cut(s)	133, 297, 580, 624, 682
Hpy8I	GTNNAC	2 cut(s)	787, 804
HpyAV	CCTTC	5 cut(s)	163, 349, 476, 512, 661
HpyCH4III	ACNGT	4 cut(s)	121, 496, 793, 808
HpyCH4V	TGCA	6 cut(s)	104, 163, 664, 695, 728, 799
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 101, 113, 546, 611, 758
HpyF3I	CTNAG	3 cut(s)	190, 294, 444
Hsp92II	CATG	5 cut(s)	167, 481, 527, 619, 703
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	179, 378
LmnI	GCTCC	4 cut(s)	100, 263, 429, 453
Lsp1109I	GCAGC	5 cut(s)	88, 116, 600, 603, 783
LweI	GCATC	2 cut(s)	673, 686
MaeI	CTAG	3 cut(s)	111, 369, 823
MaeIII	GTNAC	2 cut(s)	202, 214
MalI	GATC	2 cut(s)	181, 380
MboI	GATC	2 cut(s)	179, 378
MboII	GAAGA	4 cut(s)	148, 334, 593, 646
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	426, 445
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	3 cut(s)	127, 276, 315
MluNI	TGGCCA	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	8 cut(s)	41, 90, 127, 199, 303, 462, 656, 698
Mox20I	TGGCCA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	2 cut(s)	711, 780
MspR9I	CCNGG	1 cut(s)	456
MunI	CAATTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	6 cut(s)	34, 101, 113, 546, 611, 758
NdeII	GATC	2 cut(s)	179, 378
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	5 cut(s)	167, 481, 527, 619, 703
NlaIV	GGNNCC	3 cut(s)	395, 425, 709
NmuCI	GTSAC	2 cut(s)	202, 214
PceI	AGGCCT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	7 cut(s)	103, 106, 416, 590, 593, 676, 798
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	395, 425, 709
PstI	CTGCAG	2 cut(s)	106, 801
PstNI	CAGNNNCTG	2 cut(s)	56, 206
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	7 cut(s)	102, 105, 415, 589, 592, 675, 797
Sau3AI	GATC	2 cut(s)	179, 378
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	2 cut(s)	426, 445
SfaNI	GCATC	2 cut(s)	673, 686
SfcI	CTRYAG	2 cut(s)	102, 797
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	127, 276, 315
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	414, 674
SspMI	CTAG	3 cut(s)	111, 369, 823
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	121, 496, 793, 808
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	127, 276, 315
TauI	GCSGC	2 cut(s)	417, 677
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	5 cut(s)	211, 352, 501, 616, 796
TseFI	GTSAC	2 cut(s)	202, 214
TseI	GCWGC	5 cut(s)	101, 104, 588, 591, 796
Tsp45I	GTSAC	2 cut(s)	202, 214
TspRI	CASTG	5 cut(s)	211, 352, 501, 616, 796
XspI	CTAG	3 cut(s)	111, 369, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.