Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Reverse (-)

5815010 .. 5817408

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G086400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTCCATTCAAGAGCCAGAGCGATCAATCAAGCACAAGCAAACCTTCTTCGCCATTGCAGCAATCCCATACAAGCCCAACAGCCATACCACACTTTCCGTCCCAACAAACCCAAGACCAAGCCCCGCCGCGAACGACTTCACAGAGACACCACAAAGCTTCGCAGGCCCATCCCTTTCGTCTCCGATGTCAAAGAAGTTGAAGACCCAGAAGAAGGCTTGTCTCTCTTCTACGAGTACCACCAAATGGGCTTCAAGCACGACTACCCTTCTTACTCCGCTCTTCTCTACAAGCTCGCTCGTTCTCGAAACTTTGAAGCCGTCGAGACCATTCTCGGCCATGTACGAGATCGAAACATTCATTGCAAAGATACACTTTTCATTGCTCTGATTCAACATTATGGGAAGGCCAATTTGGTAGAGAAAGCCATTGAGCTTTTTAACCAGATGCCTTCTTTTAATTGTGTCCGTACATTGCAGGCCTTCAATGCCCTCCTTAATGTGCTTGTTGATAGCGGTAGGTTTGTGGAAGCGGATGAGATTTTTGGTCGGTGTTCTAAAATGGGTCTTCGGCCGAATTCGATTTCGTATAATATTATGATGAAGGGGTGGCTTCAAAAGGGTGATGGAGAAGAAGCTTGCAAGGTGTTTGATGAAATGCTTGAGAAAAAAGTGCAACCTAGTGTTGTGACGTATAATAGTCTTATAGGGTTTTTTGGTAGGAAGGGTGAGTTGGAGAAAGCTAATGGTTTGCTTGAGGACATGAAACAGAAAGGGAAGTACCCAAATGCTGTAACATATGCATTGTTGATGGAAGGTTTCTGCATGCTAGGAAAGCATGAGGAAGCAAAGAAGATGATGTTTGATATGGAGTATCGGGGTTGTAAACCACGGCTTCTGAATTATGGTGTTTTGATGAGTGATCTTGGAAGGAGAGGAAAGATTGATGAGGCAAAATCTTTACTTCAAGAGATGAAGAAAAGGCGGTTTAAGCCAGATGTAGTGCTGTATAACATATTGATTAACTTTCTGTGCAAGGAAGGTAGGGCTGCAGAGGCTTATAAAGTCTTGATTGAAATGCAAGTTGGAGGCTGTGTGCCTAATGCAGCTACATACAGGATGATGGTTGATGGGTTTTGTCAGATTGAAGATTTTGAGGGAGGTTTGAAGGTTTTGATTGCAATGTTGACAAGTAGACATTGTCCTCGTTTAGAAACATTTGAATGTTTGGTTACGGGTCTAGTAAAGTGTGGGAAAATTGATGATGCTTTTGTTGTCTTGGAGGAGATGGAAAAGAGAAATATGCAATTTTGTTTTGAAGCTTGGGAAGCTCTAGTTGTGGATGCTTGTGGTGAGAATGTTGTTGCAGGGGAGGTTGTGACTGAACTAATCTCGGTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent PPR PPR_2 PPR_3 Rad51

Protein Analysis

468

Amino Acids

53.51

Weight (kDa)

8.49

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1062
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	1195
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	127, 130, 279, 516, 533, 985
AcoI	YGGCCR	2 cut(s)	337, 572
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	4 cut(s)	239, 345, 472, 782
AfiI	CCNNNNNNNGG	2 cut(s)	215, 247
AjuI	GAANNNNNNNTTGG	6 cut(s)	398, 430, 716, 748, 1068, 1100
AluBI	AGCT	8 cut(s)	160, 295, 436, 638, 743, 1109, 1322, 1331
AluI	AGCT	8 cut(s)	160, 295, 436, 638, 743, 1109, 1322, 1331
Alw26I	GTCTC	4 cut(s)	141, 187, 228, 320
AoxI	GGCC	5 cut(s)	167, 337, 408, 480, 572
ApeKI	GCWGC	3 cut(s)	60, 1049, 1106
ApoI	RAATTY	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	168, 1396
AsuHPI	GGTGA	3 cut(s)	635, 740, 1364
AvaII	GGWCC	1 cut(s)	1396
BbsI	GAAGAC	2 cut(s)	210, 560
BbvI	GCAGC	3 cut(s)	72, 1036, 1118
BccI	CCATC	6 cut(s)	179, 620, 805, 1117, 1124, 1282
BceAI	ACGGC	2 cut(s)	305, 908
BcoDI	GTCTC	4 cut(s)	141, 187, 228, 320
BfaI	CTAG	4 cut(s)	681, 830, 1241, 1334
BfmI	CTRYAG	1 cut(s)	1050
BisI	GCNGC	4 cut(s)	61, 130, 1050, 1107
BlsI	GCNGC	4 cut(s)	62, 131, 1051, 1108
Bme18I	GGWCC	1 cut(s)	1396
BmgT120I	GGNCC	2 cut(s)	168, 1396
BmsI	GCATC	3 cut(s)	438, 1255, 1333
BpiI	GAAGAC	2 cut(s)	210, 560
BpuEI	CTTGAG	2 cut(s)	683, 776
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	890
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 247
Bse3DI	GCAATG	5 cut(s)	55, 361, 381, 473, 1188
BseDI	CCNNGG	1 cut(s)	890
BseGI	GGATG	4 cut(s)	171, 541, 1125, 1348
BseLI	CCNNNNNNNGG	2 cut(s)	215, 247
BseMI	GCAATG	5 cut(s)	55, 361, 381, 473, 1188
BseRI	GAGGAG	1 cut(s)	1298
BseX3I	CGGCCG	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	72, 1036, 1118
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	5 cut(s)	169, 339, 410, 482, 574
BsiEI	CGRYCG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	215, 247
BsmAI	GTCTC	4 cut(s)	141, 187, 228, 320
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	5 cut(s)	169, 339, 410, 482, 574
Bso31I	GGTCTC	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	24, 349, 922
BspACI	CCGC	6 cut(s)	127, 130, 279, 516, 533, 985
BspANI	GGCC	5 cut(s)	169, 339, 410, 482, 574
BspFNI	CGCG	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	1054
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	281
BsrDI	GCAATG	5 cut(s)	55, 361, 381, 473, 1188
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	3 cut(s)	24, 349, 922
Bst6I	CTCTTC	2 cut(s)	233, 288
BstC8I	GCNNGC	5 cut(s)	167, 297, 480, 640, 827
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	4 cut(s)	171, 541, 1125, 1348
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	27, 352, 925
BstMAI	GTCTC	4 cut(s)	141, 187, 228, 320
BstMBI	GATC	3 cut(s)	24, 349, 922
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 166, 488, 835, 991, 1055, 1328
BstNSI	RCATGY	1 cut(s)	829
BstSFI	CTRYAG	1 cut(s)	1050
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	72, 1036, 1118
BstV2I	GAAGAC	2 cut(s)	210, 560
BstZI	CGGCCG	1 cut(s)	572
BsuRI	GGCC	5 cut(s)	169, 339, 410, 482, 574
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	4 cut(s)	171, 541, 1125, 1348
Cac8I	GCNNGC	5 cut(s)	167, 297, 480, 640, 827
Cfr13I	GGNCC	2 cut(s)	168, 1396
Csp6I	GTAC	4 cut(s)	238, 344, 471, 781
CviAII	CATG	4 cut(s)	341, 763, 826, 839
CviQI	GTAC	4 cut(s)	238, 344, 471, 781
DpnI	GATC	3 cut(s)	26, 351, 924
DpnII	GATC	3 cut(s)	24, 349, 922
EaeI	YGGCCR	2 cut(s)	337, 572
EagI	CGGCCG	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	233, 288
EarI	CTCTTC	2 cut(s)	233, 288
EclXI	CGGCCG	1 cut(s)	572
Eco147I	AGGCCT	1 cut(s)	482
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	1396
Eco52I	CGGCCG	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	577
EcoT22I	ATGCAT	1 cut(s)	805
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	4 cut(s)	344, 766, 829, 842
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 360, 392
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	340, 762, 825, 838
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	1195
Fnu4HI	GCNGC	4 cut(s)	61, 130, 1050, 1107
FokI	GGATG	4 cut(s)	158, 548, 1132, 1355
Fsp4HI	GCNGC	4 cut(s)	61, 130, 1050, 1107
FspBI	CTAG	4 cut(s)	681, 830, 1241, 1334
GluI	GCNGC	4 cut(s)	61, 130, 1050, 1107
HaeIII	GGCC	5 cut(s)	169, 339, 410, 482, 574
Hin1II	CATG	4 cut(s)	344, 766, 829, 842
HincII	GTYRAC	1 cut(s)	1188
HindII	GTYRAC	1 cut(s)	1188
HindIII	AAGCTT	3 cut(s)	158, 636, 1320
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	3 cut(s)	635, 740, 1364
Hpy166II	GTNNAC	3 cut(s)	887, 1188, 1196
Hpy188I	TCNGA	4 cut(s)	187, 390, 900, 1143
Hpy188III	TCNNGA	5 cut(s)	12, 306, 325, 968, 1069
Hpy8I	GTNNAC	3 cut(s)	887, 1188, 1196
Hpy99I	CGWCG	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 166, 488, 835, 991, 1055, 1328
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	4 cut(s)	344, 766, 829, 842
Kzo9I	GATC	3 cut(s)	24, 349, 922
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	8 cut(s)	31, 151, 222, 458, 464, 1008, 1102, 1353
Lsp1109I	GCAGC	3 cut(s)	72, 1036, 1118
LweI	GCATC	3 cut(s)	438, 1255, 1333
MaeI	CTAG	4 cut(s)	681, 830, 1241, 1334
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	4 cut(s)	688, 793, 1231, 1378
MalI	GATC	3 cut(s)	26, 351, 924
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	3 cut(s)	24, 349, 922
MluCI	AATT	6 cut(s)	412, 460, 577, 901, 1257, 1307
MmeI	TCCRAC	2 cut(s)	714, 1066
Mph1103I	ATGCAT	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	6 cut(s)	441, 459, 498, 990, 1023, 1402
MslI	CAYNNNNRTG	1 cut(s)	1222
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	7 cut(s)	60, 166, 488, 835, 991, 1055, 1328
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	3 cut(s)	24, 349, 922
NlaIII	CATG	4 cut(s)	344, 766, 829, 842
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	688, 1378
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	829
PaeI	GCATGC	1 cut(s)	829
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	1200
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	62, 131, 1051, 1108
PsiI	TTATAA	1 cut(s)	1062
PspPI	GGNCC	2 cut(s)	168, 1396
PstI	CTGCAG	1 cut(s)	1054
PsyI	GACNNNGTC	1 cut(s)	1200
RsaI	GTAC	4 cut(s)	239, 345, 472, 782
RsaNI	GTAC	4 cut(s)	238, 344, 471, 781
RseI	CAYNNNNRTG	1 cut(s)	1222
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	6 cut(s)	441, 459, 498, 990, 1023, 1402
SatI	GCNGC	4 cut(s)	61, 130, 1050, 1107
Sau3AI	GATC	3 cut(s)	24, 349, 922
Sau96I	GGNCC	2 cut(s)	168, 1396
SfaNI	GCATC	3 cut(s)	438, 1255, 1333
SfcI	CTRYAG	1 cut(s)	1050
SinI	GGWCC	1 cut(s)	1396
SmiMI	CAYNNNNRTG	1 cut(s)	1222
SmlI	CTYRAG	2 cut(s)	662, 755
SmoI	CTYRAG	2 cut(s)	662, 755
SphI	GCATGC	1 cut(s)	829
Sse9I	AATT	6 cut(s)	412, 460, 577, 901, 1257, 1307
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	6 cut(s)	127, 130, 279, 516, 533, 985
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	4 cut(s)	681, 830, 1241, 1334
StuI	AGGCCT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	4 cut(s)	307, 324, 352, 581
TaqII	GACCGA	1 cut(s)	1384
TasI	AATT	6 cut(s)	412, 460, 577, 901, 1257, 1307
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	6 cut(s)	441, 459, 498, 990, 1023, 1402
Tru9I	TTAA	6 cut(s)	441, 459, 498, 990, 1023, 1402
TseFI	GTSAC	2 cut(s)	688, 1378
TseI	GCWGC	3 cut(s)	60, 1049, 1106
Tsp45I	GTSAC	2 cut(s)	688, 1378
TspDTI	ATGAA	6 cut(s)	350, 370, 617, 669, 779, 989
TspGWI	ACGGA	2 cut(s)	89, 458
Tth111I	GACNNNGTC	1 cut(s)	1200
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	1396
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	829
XmiI	GTMKAC	1 cut(s)	1195
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	4 cut(s)	681, 830, 1241, 1334
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.