Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Reverse (-)

25300148 .. 25300987

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAGCTCACAAAATTTTCTCTGACACAGCCTACCTACTCTTTCTCACACTCACCATTTTCTCTGCCACATCAGCACGAACTCTCGAGGAGGAGCAGCTACCAGTTCCTGTAGTCCCTCCAGTGGCGTCCAATACAGACGAGACACCTATCATCAATGCTAATGTTGCTGATCAACATACCTTAATCTTCTTTATGCACGACATCCTCGGAGGATCGAACCCCACGGCTCGAGCCATGACCGGGATAGTCAACAGCCCTGCAGCCAATGGCCAACTGCCATTTGCCAAACCCAATGGGGCAGTCCTACCTTTCAACAACGGGGTACCCCAGAACAACAACAACAATGGTCTTATAAACAACAACAACATCCCTTTTCTCACAGGGCTAAGTGGAACAACATCAAATGTGGCACAAAACAACGGGATCAATGGCGGAAATTTCCCGATAAACGGTGGACAGCTCCAGCCAGGCTCCGTCCTCCAAAATCTCATGTTTGGCACCATGAGTGTGTTTGACGATGAGCTGACTGAAGGGCATGAGCTTAGCTCTGGTTTGGTTGGGAAGGCACAAGGTTTCTATGTGGTGAGCTCTGAAGATGGTACCAGCCAGACTATGGGGTTCACGGCTATGTTCGAAAGCGGGAGCTACGCCGATAGCCTGAGCTTCTTTGGGGTTCATCGGACGGCTGTATCGGAGTCTCATTTGGCCATCATGGGTGGCACTGGCAAGTATGTGAATGCCAAAGGTTTTGCCATGGTCAAGACCTTCCCTGCTTCCAATCAGCAAACTGATGGTGCAGAGACTCTGCTGCAATTCACAGTTTATCTCACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

280

Amino Acids

29.51

Weight (kDa)

4.67

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc65I	GGTACC	2 cut(s)	325, 602
AccB1I	GGYRCC	3 cut(s)	325, 500, 602
AccB7I	CCANNNNNTGG	1 cut(s)	616
AciI	CCGC	2 cut(s)	435, 642
AclWI	GGATC	2 cut(s)	223, 434
AcoI	YGGCCR	2 cut(s)	271, 708
AcsI	RAATTY	2 cut(s)	15, 439
AcuI	CTGAAG	2 cut(s)	552, 615
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	327, 604
AfiI	CCNNNNNNNGG	4 cut(s)	124, 243, 452, 616
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	9 cut(s)	8, 100, 463, 526, 544, 549, 591, 648, 666
AluI	AGCT	9 cut(s)	8, 100, 463, 526, 544, 549, 591, 648, 666
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	137, 705, 797
AlwI	GGATC	2 cut(s)	223, 434
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	2 cut(s)	86, 231
AoxI	GGCC	2 cut(s)	271, 708
ApeKI	GCWGC	3 cut(s)	97, 263, 811
ApoI	RAATTY	2 cut(s)	15, 439
Asp718I	GGTACC	2 cut(s)	325, 602
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	46, 598
AsuII	TTCGAA	1 cut(s)	636
AvaI	CYCGRG	2 cut(s)	86, 231
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BalI	TGGCCA	2 cut(s)	273, 710
BanI	GGYRCC	3 cut(s)	325, 500, 602
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	3 cut(s)	109, 275, 798
BccI	CCATC	3 cut(s)	593, 719, 788
BceAI	ACGGC	3 cut(s)	243, 642, 702
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	137, 705, 797
BfmI	CTRYAG	2 cut(s)	111, 261
BisI	GCNGC	3 cut(s)	98, 264, 812
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	3 cut(s)	99, 265, 813
Bme1390I	CCNGG	2 cut(s)	244, 471
BmeT110I	CYCGRG	2 cut(s)	86, 231
BmiI	GGNNCC	4 cut(s)	327, 475, 502, 604
BmrFI	CCNGG	2 cut(s)	244, 471
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	2 cut(s)	105, 449
Bpu10I	CCTNAGC	1 cut(s)	662
Bpu1102I	GCTNAGC	1 cut(s)	545
Bpu14I	TTCGAA	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	208, 225, 756
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 243, 452, 616
Bse1I	ACTGG	3 cut(s)	104, 122, 730
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	208, 225, 756
BseGI	GGATG	2 cut(s)	204, 369
BseLI	CCNNNNNNNGG	4 cut(s)	124, 243, 452, 616
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	3 cut(s)	104, 122, 730
BseRI	GAGGAG	2 cut(s)	104, 107
BseXI	GCAGC	3 cut(s)	109, 275, 798
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	2 cut(s)	273, 710
BshNI	GGYRCC	3 cut(s)	325, 500, 602
BsiHKAI	GWGCWC	1 cut(s)	593
BsiHKCI	CYCGRG	2 cut(s)	86, 231
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	4 cut(s)	124, 243, 452, 616
BsmAI	GTCTC	3 cut(s)	137, 705, 797
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	2 cut(s)	273, 710
BsoBI	CYCGRG	2 cut(s)	86, 231
Bsp119I	TTCGAA	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	3 cut(s)	172, 215, 426
Bsp1720I	GCTNAGC	1 cut(s)	545
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	2 cut(s)	435, 642
BspANI	GGCC	2 cut(s)	273, 710
BspCNI	CTCAG	1 cut(s)	654
BspLI	GGNNCC	4 cut(s)	327, 475, 502, 604
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	223, 434
BspT104I	TTCGAA	1 cut(s)	636
BspT107I	GGYRCC	3 cut(s)	325, 500, 602
BsrI	ACTGG	3 cut(s)	104, 122, 730
BssECI	CCNNGG	3 cut(s)	208, 225, 756
BssMI	GATC	3 cut(s)	172, 215, 426
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	455, 823
BstACI	GRCGYC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	636
BstDEI	CTNAG	3 cut(s)	389, 545, 662
BstDSI	CCRYGG	2 cut(s)	225, 756
BstF5I	GGATG	2 cut(s)	204, 369
BstKTI	GATC	3 cut(s)	175, 218, 429
BstMAI	GTCTC	3 cut(s)	137, 705, 797
BstMBI	GATC	3 cut(s)	172, 215, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 167
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	2 cut(s)	242, 469
BstSFI	CTRYAG	2 cut(s)	111, 261
BstV1I	GCAGC	3 cut(s)	109, 275, 798
BsuRI	GGCC	2 cut(s)	273, 710
BtgI	CCRYGG	2 cut(s)	225, 756
BtsCI	GGATG	2 cut(s)	204, 369
BtsIMutI	CAGTG	2 cut(s)	129, 723
CaiI	CAGNNNCTG	1 cut(s)	110
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	326, 603
CviAII	CATG	6 cut(s)	238, 493, 505, 539, 715, 757
CviQI	GTAC	2 cut(s)	326, 603
DdeI	CTNAG	3 cut(s)	389, 545, 662
DpnI	GATC	3 cut(s)	174, 217, 428
DpnII	GATC	3 cut(s)	172, 215, 426
EaeI	YGGCCR	2 cut(s)	271, 708
EciI	GGCGGA	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	2 cut(s)	552, 615
Eco88I	CYCGRG	2 cut(s)	86, 231
EcoICRI	GAGCTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	6 cut(s)	241, 496, 508, 542, 718, 760
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	6 cut(s)	237, 492, 504, 538, 714, 756
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	98, 264, 812
FokI	GGATG	2 cut(s)	191, 356
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	3 cut(s)	98, 264, 812
GluI	GCNGC	3 cut(s)	98, 264, 812
GsuI	CTGGAG	2 cut(s)	105, 449
HaeIII	GGCC	2 cut(s)	273, 710
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	241, 496, 508, 542, 718, 760
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	698, 805
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	46, 598
Hpy166II	GTNNAC	3 cut(s)	253, 458, 624
Hpy188I	TCNGA	5 cut(s)	25, 212, 595, 684, 697
Hpy188III	TCNNGA	3 cut(s)	86, 445, 763
Hpy8I	GTNNAC	3 cut(s)	253, 458, 624
HpyAV	CCTTC	3 cut(s)	527, 559, 778
HpyCH4III	ACNGT	2 cut(s)	455, 823
HpyCH4V	TGCA	4 cut(s)	199, 263, 800, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 167
HpyF3I	CTNAG	3 cut(s)	389, 545, 662
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	241, 496, 508, 542, 718, 760
KpnI	GGTACC	2 cut(s)	329, 606
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	172, 215, 426
LmnI	GCTCC	4 cut(s)	94, 468, 479, 645
Lsp1109I	GCAGC	3 cut(s)	109, 275, 798
MalI	GATC	3 cut(s)	174, 217, 428
MboI	GATC	3 cut(s)	172, 215, 426
MboII	GAAGA	2 cut(s)	181, 608
MhlI	GDGCHC	1 cut(s)	593
MlsI	TGGCCA	2 cut(s)	273, 710
MluCI	AATT	3 cut(s)	15, 439, 815
MluNI	TGGCCA	2 cut(s)	273, 710
MlyI	GAGTC	2 cut(s)	707, 799
MnlI	CCTC	6 cut(s)	82, 85, 129, 206, 218, 491
Mox20I	TGGCCA	2 cut(s)	273, 710
MscI	TGGCCA	2 cut(s)	273, 710
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	509, 629
Msp20I	TGGCCA	2 cut(s)	273, 710
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	244, 471
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	74, 167
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	3 cut(s)	172, 215, 426
NlaIII	CATG	6 cut(s)	241, 496, 508, 542, 718, 760
NlaIV	GGNNCC	4 cut(s)	327, 475, 502, 604
NspV	TTCGAA	1 cut(s)	636
PaeR7I	CTCGAG	2 cut(s)	86, 231
PctI	GAATGC	1 cut(s)	745
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	3 cut(s)	99, 265, 813
PleI	GAGTC	2 cut(s)	706, 799
PpsI	GAGTC	2 cut(s)	706, 799
PsiI	TTATAA	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	4 cut(s)	327, 475, 502, 604
PspXI	VCTCGAGB	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	327, 604
RsaNI	GTAC	2 cut(s)	326, 603
RseI	CAYNNNNRTG	2 cut(s)	509, 629
SacI	GAGCTC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	3 cut(s)	98, 264, 812
Sau3AI	GATC	3 cut(s)	172, 215, 426
SchI	GAGTC	2 cut(s)	707, 799
ScrFI	CCNGG	2 cut(s)	244, 471
SduI	GDGCHC	1 cut(s)	593
SfcI	CTRYAG	2 cut(s)	111, 261
Sfr274I	CTCGAG	2 cut(s)	86, 231
SfuI	TTCGAA	1 cut(s)	636
SlaI	CTCGAG	2 cut(s)	86, 231
SmiMI	CAYNNNNRTG	2 cut(s)	509, 629
SmlI	CTYRAG	2 cut(s)	86, 231
SmoI	CTYRAG	2 cut(s)	86, 231
Sse9I	AATT	3 cut(s)	15, 439, 815
SsiI	CCGC	2 cut(s)	435, 642
SstI	GAGCTC	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	242, 469
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	2 cut(s)	455, 823
TaqI	TCGA	4 cut(s)	87, 218, 232, 636
TasI	AATT	3 cut(s)	15, 439, 815
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	129, 730
TseI	GCWGC	3 cut(s)	97, 263, 811
TspDTI	ATGAA	1 cut(s)	668
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	129, 730
Van91I	CCANNNNNTGG	1 cut(s)	616
XapI	RAATTY	2 cut(s)	15, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XhoI	CTCGAG	2 cut(s)	86, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.