Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008527.1

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Reverse (-)

16287 .. 17153

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008527.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgttctcagtcacccacctactattcctcaccctcaccattttatctgccacctcagcgcgaactctcgaggagcagccactggttcctgttgtgcctctggtggtgtcgaatacaattggcacaccttccatcaatgctgcaccagttgtcacaccttcagcttcacagcctgccactgtggctgatgctgatgaccaccattccttagtcttcttcctgcacgacattctaggtggcacgaacccctcagctagagccatgacagggatagtcaacagccctgcagtcaatggacaagtgccatttgccaaaccaaatggagcagtcctgccatttaacaatggaataccccagaacaacaacaacaacggtattctaagcaacaacaacatcccgtttctcactggacttagtggagcaacgcaaaatgtggtacaaaacaataacaacaacaacaacaatttcatcaatggtgggcagctctttccaggaggctccacactccaaaacctcatgttcggcacaatgagtgtgttcgatgatgagctaactgaagggcatgagctcgggtctggtttggttggcaaggcacaagggttctatgtggtgagttctgaagatggtacgagtcagactatggctttcactgctatgtttcaaaatgggggttatgctgatagccttagcttctttggggtccatcgtgtggctgcgtcagagtctcacctggctatcatgggtggcaccggaaagtatgttgatgcgaaagggtttgccattgttaagacattcccggctaccaatgagcatcaaactgatggagcagagaccttgttgcagttcactgtttatatcacttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

288

Amino Acids

30.24

Weight (kDa)

4.9

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccII	CGCG	1 cut(s)	61
AcuI	CTGAAG	3 cut(s)	144, 576, 639
AfaI	GTAC	2 cut(s)	438, 628
AfiI	CCNNNNNNNGG	2 cut(s)	267, 709
AgsI	TTSAA	1 cut(s)	662
AjnI	CCWGG	2 cut(s)	490, 729
AluBI	AGCT	6 cut(s)	164, 254, 484, 550, 568, 690
AluI	AGCT	6 cut(s)	164, 254, 484, 550, 568, 690
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	729, 824
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	2 cut(s)	68, 569
ApeKI	GCWGC	4 cut(s)	76, 140, 481, 713
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	5 cut(s)	4, 22, 28, 622, 719
AvaI	CYCGRG	2 cut(s)	68, 569
AvaII	GGWCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	570
BbvCI	CCTCAGC	2 cut(s)	55, 250
BbvI	GCAGC	4 cut(s)	88, 127, 493, 700
BccI	CCATC	4 cut(s)	140, 617, 711, 815
BciT130I	CCWGG	2 cut(s)	492, 731
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	2 cut(s)	729, 824
BfaI	CTAG	3 cut(s)	233, 255, 865
BfmI	CTRYAG	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	77, 141, 482, 714
BlsI	GCNGC	4 cut(s)	78, 142, 483, 715
Bme1390I	CCNGG	3 cut(s)	492, 731, 797
Bme18I	GGWCC	1 cut(s)	700
BmeT110I	CYCGRG	2 cut(s)	68, 569
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	4 cut(s)	87, 499, 701, 748
BmrFI	CCNGG	3 cut(s)	492, 731, 797
BmsI	GCATC	3 cut(s)	178, 754, 820
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	3 cut(s)	55, 250, 686
BpuMI	CCSGG	1 cut(s)	797
BsaI	GGTCTC	1 cut(s)	824
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 709
Bse1I	ACTGG	3 cut(s)	87, 146, 412
BseBI	CCWGG	2 cut(s)	492, 731
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	267, 709
BseMII	CTCAG	3 cut(s)	21, 69, 264
BseNI	ACTGG	3 cut(s)	87, 146, 412
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	4 cut(s)	88, 127, 493, 700
BsgI	GTGCAG	2 cut(s)	126, 206
Bsh1236I	CGCG	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	2 cut(s)	68, 569
BsiSI	CCGG	2 cut(s)	750, 797
BslI	CCNNNNNNNGG	2 cut(s)	267, 709
BsmAI	GTCTC	2 cut(s)	729, 824
Bso31I	GGTCTC	1 cut(s)	824
BsoBI	CYCGRG	2 cut(s)	68, 569
Bsp1286I	GDGCHC	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	20, 68, 263
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	4 cut(s)	87, 499, 701, 748
BspMAI	CTGCAG	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	824
BsrI	ACTGG	3 cut(s)	87, 146, 412
Bst2UI	CCWGG	2 cut(s)	492, 731
Bst4CI	ACNGT	3 cut(s)	181, 374, 850
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	7 cut(s)	7, 55, 208, 250, 380, 413, 686
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	729, 824
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 182, 650
BstNI	CCWGG	2 cut(s)	492, 731
BstSCI	CCNGG	3 cut(s)	490, 729, 795
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	4 cut(s)	88, 127, 493, 700
BstV2I	GAAGAC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	5 cut(s)	80, 177, 405, 648, 846
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	2 cut(s)	437, 627
CviAII	CATG	4 cut(s)	262, 517, 563, 739
CviQI	GTAC	2 cut(s)	437, 627
DdeI	CTNAG	7 cut(s)	7, 55, 208, 250, 380, 413, 686
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	3 cut(s)	144, 576, 639
Eco88I	CYCGRG	2 cut(s)	68, 569
EcoICRI	GAGCTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	490, 729
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	4 cut(s)	265, 520, 566, 742
FatI	CATG	4 cut(s)	261, 516, 562, 738
Fnu4HI	GCNGC	4 cut(s)	77, 141, 482, 714
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	4 cut(s)	77, 141, 482, 714
FspBI	CTAG	3 cut(s)	233, 255, 865
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	4 cut(s)	77, 141, 482, 714
HapII	CCGG	2 cut(s)	750, 797
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	265, 520, 566, 742
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	631, 722
HpaII	CCGG	2 cut(s)	750, 797
HphI	GGTGA	5 cut(s)	4, 22, 28, 622, 719
Hpy166II	GTNNAC	2 cut(s)	277, 846
Hpy188I	TCNGA	3 cut(s)	619, 636, 721
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	2 cut(s)	277, 846
HpyAV	CCTTC	3 cut(s)	138, 168, 551
HpyCH4III	ACNGT	3 cut(s)	181, 374, 850
HpyCH4V	TGCA	4 cut(s)	143, 223, 287, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 182, 650
HpyF3I	CTNAG	7 cut(s)	7, 55, 208, 250, 380, 413, 686
Hsp92II	CATG	4 cut(s)	265, 520, 566, 742
HspAI	GCGC	1 cut(s)	59
LmnI	GCTCC	5 cut(s)	73, 323, 419, 503, 824
Lsp1109I	GCAGC	4 cut(s)	88, 127, 493, 700
LweI	GCATC	3 cut(s)	178, 754, 820
MaeI	CTAG	3 cut(s)	233, 255, 865
MaeIII	GTNAC	2 cut(s)	10, 151
MboII	GAAGA	3 cut(s)	205, 208, 632
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	2 cut(s)	117, 463
MlyI	GAGTC	2 cut(s)	640, 731
MnlI	CCTC	8 cut(s)	38, 44, 64, 64, 108, 259, 488, 524
MseI	TTAA	2 cut(s)	339, 786
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	2 cut(s)	750, 797
MspR9I	CCNGG	3 cut(s)	492, 731, 797
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	2 cut(s)	492, 731
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	56, 182, 650
NciI	CCSGG	1 cut(s)	797
NlaIII	CATG	4 cut(s)	265, 520, 566, 742
NlaIV	GGNNCC	4 cut(s)	87, 499, 701, 748
NmuCI	GTSAC	2 cut(s)	10, 151
PaeR7I	CTCGAG	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	78, 142, 483, 715
PleI	GAGTC	2 cut(s)	639, 730
PpsI	GAGTC	2 cut(s)	639, 730
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	490, 729
PspGI	CCWGG	2 cut(s)	490, 729
PspN4I	GGNNCC	4 cut(s)	87, 499, 701, 748
PspPI	GGNCC	1 cut(s)	700
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	438, 628
RsaNI	GTAC	2 cut(s)	437, 627
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	339, 786
SatI	GCNGC	4 cut(s)	77, 141, 482, 714
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	2 cut(s)	640, 731
ScrFI	CCNGG	3 cut(s)	492, 731, 797
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	3 cut(s)	178, 754, 820
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	700
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	117, 463
SspMI	CTAG	3 cut(s)	233, 255, 865
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	3 cut(s)	490, 729, 795
TaaI	ACNGT	3 cut(s)	181, 374, 850
TaqI	TCGA	3 cut(s)	69, 110, 540
TasI	AATT	2 cut(s)	117, 463
Tru1I	TTAA	2 cut(s)	339, 786
Tru9I	TTAA	2 cut(s)	339, 786
TscAI	CASTG	5 cut(s)	87, 184, 412, 655, 853
TseFI	GTSAC	2 cut(s)	10, 151
TseI	GCWGC	4 cut(s)	76, 140, 481, 713
Tsp45I	GTSAC	2 cut(s)	10, 151
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	5 cut(s)	87, 184, 412, 655, 853
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	3 cut(s)	233, 255, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.