Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003115

Physical Location & Seq

Genomic Coordinates Forward (+)

17118476 .. 17119892

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACGGAAGTGATCAATCATATGGAGAGGGATTTATGTGAATGCAAAGACTTGGTGTTTGTGGCTGCAATCAAGACCTACGGAAGAGCAGGGCAGCTGGACGAGGCGGTGTCTCTTTTTAAGAACCTTTCGCAGTTCAATTGTGTGAATTGGACGCAGTCTTATAATACCCTGGTAGAGATTATGGTCGAAGAGTCCAGGCTTGAAGACGCTTGTCGCCTTTTCGTGGAGCATTGTTGTGGAGTCGTCTTCACCACTTGGAAACCCTACACTCTTCGGCCGCAGCTGCTCTCTCACCTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

5.53

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07730 AT2G28670 AT2G28670
fragaria_vesca	FvH4_3g34760 FvH4_7g21010 FvH4_7g21360
malus_domestica	MD01G1120000.v1.1 MD01G1167500.v1.1 MD03G1102000.v1.1 MD07G1189300.v1.1 MD11G1115800.v1.1 MD15G1209700.v1.1
prunus_persica	Prupe.2G226900_v2.0.a1 Prupe.6G007400_v2.0.a1 Prupe.6G086300_v2.0.a1 Prupe.6G086400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365401 RchiOBHm_Chr2g0125291
rosa_laevigata	RLG00000018854 RLG00000027425
rosa_multiflora	Rmu_sc0003505.1_g000037 Rmu_sc0008527.1_g000005
rosa_roxburghii	Rroxscaffold_2G00118110 Rroxscaffold_2G00118620
rosa_rugosa	Rorug01G0321700 Rorug02G0256600
rosa_samantha	Rh1AG330600 Rh1BG292100 Rh1CG308600 Rh1DG323700 Rh2AG314900 Rh2BG323000 Rh2CG305000 Rh2DG341200
rosa_wichuraiana	Rw1G029310 Rw2G025450 Rw5G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AciI	CCGC	2 cut(s)	107, 281
AcoI	YGGCCR	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	139, 206
AjnI	CCWGG	2 cut(s)	171, 197
AluBI	AGCT	2 cut(s)	97, 286
AluI	AGCT	2 cut(s)	97, 286
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	65, 94, 283, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AsuHPI	GGTGA	2 cut(s)	244, 287
AxyI	CCTNAGG	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	213, 241
BbvI	GCAGC	4 cut(s)	52, 106, 273, 295
BciT130I	CCWGG	2 cut(s)	173, 199
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	117
BisI	GCNGC	5 cut(s)	66, 95, 281, 284, 287
BlsI	GCNGC	5 cut(s)	67, 96, 282, 285, 288
Bme1390I	CCNGG	2 cut(s)	173, 199
BmrFI	CCNGG	2 cut(s)	173, 199
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	2 cut(s)	213, 241
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse21I	CCTNAGG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	173, 199
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	4 cut(s)	52, 106, 273, 295
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	107, 281
BspANI	GGCC	1 cut(s)	280
BspQI	GCTCTTC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	173, 199
Bst6I	CTCTTC	3 cut(s)	79, 186, 279
BstDEI	CTNAG	1 cut(s)	299
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	12
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	2 cut(s)	173, 199
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	171, 197
BstV1I	GCAGC	4 cut(s)	52, 106, 273, 295
BstV2I	GAAGAC	2 cut(s)	213, 241
BstZI	CGGCCG	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	280
CseI	GACGC	2 cut(s)	163, 218
CviJI	RGCY	5 cut(s)	65, 97, 202, 280, 286
CviKI_1	RGCY	5 cut(s)	65, 97, 202, 280, 286
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	278
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	3 cut(s)	79, 186, 279
EarI	CTCTTC	3 cut(s)	79, 186, 279
EclXI	CGGCCG	1 cut(s)	278
Eco52I	CGGCCG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	171, 197
FaiI	YATR	5 cut(s)	21, 23, 37, 165, 185
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	66, 95, 281, 284, 287
Fsp4HI	GCNGC	5 cut(s)	66, 95, 281, 284, 287
GluI	GCNGC	5 cut(s)	66, 95, 281, 284, 287
HaeIII	GGCC	1 cut(s)	280
HgaI	GACGC	2 cut(s)	163, 218
HinfI	GANTC	2 cut(s)	194, 243
HphI	GGTGA	2 cut(s)	244, 287
Hpy188III	TCNNGA	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	45, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	75, 83, 158, 184, 185, 211, 286
Lsp1109I	GCAGC	4 cut(s)	52, 106, 273, 295
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	5 cut(s)	96, 203, 218, 241, 266
MfeI	CAATTG	1 cut(s)	139
MluCI	AATT	2 cut(s)	139, 148
MlyI	GAGTC	2 cut(s)	203, 252
MnlI	CCTC	2 cut(s)	21, 97
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	97, 286
MspR9I	CCNGG	2 cut(s)	173, 199
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	2 cut(s)	173, 199
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	157
PkrI	GCNGC	5 cut(s)	67, 96, 282, 285, 288
PleI	GAGTC	2 cut(s)	202, 251
PpsI	GAGTC	2 cut(s)	202, 251
PshAI	GACNNNNGTC	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	171, 197
PspGI	CCWGG	2 cut(s)	171, 197
PsyI	GACNNNGTC	1 cut(s)	157
PvuII	CAGCTG	2 cut(s)	97, 286
RseI	CAYNNNNRTG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	5 cut(s)	66, 95, 281, 284, 287
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	203, 252
ScrFI	CCNGG	2 cut(s)	173, 199
SetI	ASST	6 cut(s)	80, 99, 129, 288, 300, 305
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	139, 148
SsiI	CCGC	2 cut(s)	107, 281
StyD4I	CCNGG	2 cut(s)	171, 197
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	139, 148
TauI	GCSGC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	4 cut(s)	65, 94, 283, 286
TspGWI	ACGGA	2 cut(s)	20, 96
Tth111I	GACNNNGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.