Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006066

Physical Location & Seq

Genomic Coordinates Reverse (-)

20448060 .. 20449253

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAAGCTACACCTACACCAAGTGTTATAGCAAAACTGATGGGTCTTGATGACTCGCCACCTCAGGTGCCTGTCCAAAAACAAAGAAGAGTGCTGTCTGAGAATTACCTACGCAGAGTTGCTTCCATTGGTGCCAGAGAGTCTCGCCATTCATTCAGGTTGAGAGTACCTGAAGTGACGGATTATGGGGGAAGTTTTTTGATCGGCGAGCATCTGCATAATCCGCAAGTTTCCCCTTCAACATGTACTTCTGGCAGTGGAAATGTTTCCCCTTCAACAAGTTTCCCCTGCAAGCTACAAAATGCCACTTTACTTGAAACAATTGAGAATGGAATTGTCAGAGAATCCCTTGGAGAAGTTGGACTCATAAATTTAGATGATTTTTCAAGATCGCAATTGGGGTCAAACAAAGAAGGATGCATTCCCGGTAGTAGAATTGTTGTTTTGAAACCGAAGCATGGAAAGGACGAGAATTCTGCGAGATGTTTCCCTTCTTTGAGTTCCCTTGATGTTTCTCATTCCAGTGATCGAAAGTGCGCGGGGTTTTCTAGTCATAGTAGCGGGAAAATACATGTTGAAGTAAAAGAAAGAAAGAACTTGGCATTTGACATGGAACCAGTAAGCTTAAGGTCTACAGTTTTGAGGGAAATATTGGGGAAGCTAACTGAAAATACAAGTTGCAACAAAGCCAACATTGATACAAAGGTCTCACAGTTAGGATCCAGAGGTGGCGACTCAGTTGCAATGAAAACTGAATCGATAAGGTTTTCCTTGTCTTATTCAGATGGGTCATATGGATCCCAGGAAGCCAAAAAGCAACTCTCAAAACGACGGAAGATGACTAATAAGCTGGAAGAATCAGGAATGGCTTGTAAAGGCGACACCCTCGGGAATTCGCTTGCCATGTCTGCCCATGAAACAGGCTCAAGAACATTGGATCACAAGCTTTTTAGGCATCTTCAACCAAAAAGAAAGCTCGTAAGGGTTGACCTGAAAGACCTAGACCTCAGTAAGTTTAGAACACAGCAAGATAAATATGCAGCTCTTTGCAATGAATGGAGTTTCAAGCCAAAAGGGTCTATTAATTTGGGGCAGTACAAATCAAGGGAGTACAAATTCAACCAGAATGATGGCTTCGGCCCTGTAAAGTTGATCGATCCAACTGTAACAAACTCCAATCTTATCCTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

398

Amino Acids

43.71

Weight (kDa)

9.42

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435
fragaria_vesca	FvH4_7g21020
malus_domestica	MD01G1120100.v1.1 MD01G1120200.v1.1 MD07G1189400.v1.1
prunus_persica	Prupe.2G227000_v2.0.a1 Prupe.2G227000_v2.0.a1
pyrus_communis	pycom01g14670 pycom07g17920
rosa_chinensis	RchiOBHm_Chr1g0365411
rosa_laevigata	RLG00000027424
rosa_multiflora	Rmu_sc0008527.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291250
rosa_rugosa	Rorug01G0321700 Rorug01G0321800 Rorug01G0321900 Rorug01G0322000
rosa_samantha	Rh1AG330700 Rh1BG292200 Rh1CG308700 Rh1DG323800
rosa_wichuraiana	Rw1G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	67, 131
AccI	GTMKAC	1 cut(s)	632
AccII	CGCG	1 cut(s)	539
AciI	CCGC	3 cut(s)	224, 539, 561
AclWI	GGATC	6 cut(s)	714, 727, 792, 805, 945, 1151
AcsI	RAATTY	4 cut(s)	370, 472, 892, 1115
AcuI	CTGAAG	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	4 cut(s)	168, 247, 1097, 1112
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflII	CTTAAG	1 cut(s)	625
AflIII	ACRYGT	2 cut(s)	242, 571
AgsI	TTSAA	9 cut(s)	240, 276, 317, 387, 448, 578, 962, 1066, 1120
AjnI	CCWGG	1 cut(s)	801
AluBI	AGCT	8 cut(s)	8, 295, 624, 661, 850, 946, 976, 1043
AluI	AGCT	8 cut(s)	8, 295, 624, 661, 850, 946, 976, 1043
Alw26I	GTCTC	2 cut(s)	147, 712
AlwI	GGATC	6 cut(s)	714, 727, 792, 805, 945, 1151
Ama87I	CYCGRG	1 cut(s)	887
AoxI	GGCC	1 cut(s)	1138
ApeKI	GCWGC	1 cut(s)	1040
ApoI	RAATTY	4 cut(s)	370, 472, 892, 1115
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	1139
AsuC2I	CCSGG	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	887
AxyI	CCTNAGG	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BamHI	GGATCC	2 cut(s)	719, 797
BanI	GGYRCC	2 cut(s)	67, 131
BbvI	GCAGC	1 cut(s)	1052
BccI	CCATC	3 cut(s)	34, 779, 1124
BcgI	CGANNNNNNTGC	4 cut(s)	458, 492, 722, 756
BciT130I	CCWGG	1 cut(s)	803
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	2 cut(s)	147, 712
BfaI	CTAG	4 cut(s)	549, 1001, 1187, 1192
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	625
BisI	GCNGC	1 cut(s)	1041
BlsI	GCNGC	1 cut(s)	1042
Bme1390I	CCNGG	2 cut(s)	426, 803
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	1139
BmiI	GGNNCC	5 cut(s)	69, 133, 615, 721, 799
BmrFI	CCNGG	2 cut(s)	426, 803
BmsI	GCATC	3 cut(s)	220, 407, 964
BpuEI	CTTGAG	1 cut(s)	910
BpuMI	CCSGG	1 cut(s)	426
Bsa29I	ATCGAT	2 cut(s)	758, 1155
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	3 cut(s)	349, 801, 886
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	522, 617
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	2 cut(s)	750, 1057
BseBI	CCWGG	1 cut(s)	803
BseCI	ATCGAT	2 cut(s)	758, 1155
BseDI	CCNNGG	3 cut(s)	349, 801, 886
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	750, 1057
BseMII	CTCAG	4 cut(s)	77, 90, 750, 1021
BseNI	ACTGG	2 cut(s)	522, 617
BseXI	GCAGC	1 cut(s)	1052
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	1140
BshNI	GGYRCC	2 cut(s)	67, 131
BshVI	ATCGAT	2 cut(s)	758, 1155
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	147, 712
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	1140
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	887
Bsp143I	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
BspACI	CCGC	3 cut(s)	224, 539, 561
BspANI	GGCC	1 cut(s)	1140
BspCNI	CTCAG	4 cut(s)	76, 91, 749, 1020
BspDI	ATCGAT	2 cut(s)	758, 1155
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	5 cut(s)	69, 133, 615, 721, 799
BspPI	GGATC	6 cut(s)	714, 727, 792, 805, 945, 1151
BspT107I	GGYRCC	2 cut(s)	67, 131
BspTI	CTTAAG	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	712
BsrDI	GCAATG	2 cut(s)	750, 1057
BsrI	ACTGG	2 cut(s)	522, 617
BssECI	CCNNGG	3 cut(s)	349, 801, 886
BssMI	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	3 cut(s)	637, 714, 1165
Bst6I	CTCTTC	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	209, 293, 900
BstDEI	CTNAG	4 cut(s)	63, 99, 736, 1007
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	8 cut(s)	204, 392, 529, 722, 800, 940, 1155, 1159
BstMAI	GTCTC	2 cut(s)	147, 712
BstMBI	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 908, 952
BstNI	CCWGG	1 cut(s)	803
BstNSI	RCATGY	2 cut(s)	246, 575
BstSCI	CCNGG	2 cut(s)	424, 801
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	1052
BstX2I	RGATCY	2 cut(s)	719, 797
BstXI	CCANNNNNNTGG	1 cut(s)	1130
BstYI	RGATCY	2 cut(s)	719, 797
Bsu15I	ATCGAT	2 cut(s)	758, 1155
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	1140
BsuTUI	ATCGAT	2 cut(s)	758, 1155
BtsCI	GGATG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 529
Cac8I	GCNNGC	3 cut(s)	209, 293, 900
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	1139
ClaI	ATCGAT	2 cut(s)	758, 1155
Csp6I	GTAC	4 cut(s)	167, 246, 1096, 1111
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	6 cut(s)	243, 458, 572, 610, 904, 914
CviQI	GTAC	4 cut(s)	167, 246, 1096, 1111
DdeI	CTNAG	4 cut(s)	63, 99, 736, 1007
DpnI	GATC	8 cut(s)	203, 391, 528, 721, 799, 939, 1154, 1158
DpnII	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	887
EcoRI	GAATTC	2 cut(s)	472, 892
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	6 cut(s)	246, 461, 575, 613, 907, 917
FatI	CATG	6 cut(s)	242, 457, 571, 609, 903, 913
FauI	CCCGC	2 cut(s)	532, 554
FauNDI	CATATG	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	632
Fnu4HI	GCNGC	1 cut(s)	1041
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	1041
FspBI	CTAG	4 cut(s)	549, 1001, 1187, 1192
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	1 cut(s)	1041
HaeIII	GGCC	1 cut(s)	1140
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	6 cut(s)	246, 461, 575, 613, 907, 917
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	2 cut(s)	622, 944
HinfI	GANTC	7 cut(s)	53, 140, 344, 363, 734, 755, 857
HpaII	CCGG	1 cut(s)	426
Hpy166II	GTNNAC	2 cut(s)	633, 988
Hpy188I	TCNGA	3 cut(s)	100, 341, 784
Hpy188III	TCNNGA	6 cut(s)	47, 387, 723, 861, 889, 927
Hpy8I	GTNNAC	2 cut(s)	633, 988
Hpy99I	CGWCG	1 cut(s)	834
HpyAV	CCTTC	4 cut(s)	246, 282, 407, 501
HpyCH4III	ACNGT	3 cut(s)	637, 714, 1165
HpyCH4V	TGCA	7 cut(s)	217, 291, 420, 681, 743, 1040, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 908, 952
HpyF3I	CTNAG	4 cut(s)	63, 99, 736, 1007
Hsp92II	CATG	6 cut(s)	246, 461, 575, 613, 907, 917
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
Lsp1109I	GCAGC	1 cut(s)	1052
LweI	GCATC	3 cut(s)	220, 407, 964
MaeI	CTAG	4 cut(s)	549, 1001, 1187, 1192
MaeIII	GTNAC	2 cut(s)	175, 1165
MalI	GATC	8 cut(s)	203, 391, 528, 721, 799, 939, 1154, 1158
MboI	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
MboII	GAAGA	4 cut(s)	99, 847, 866, 950
MfeI	CAATTG	2 cut(s)	321, 395
MflI	RGATCY	2 cut(s)	719, 797
MlyI	GAGTC	4 cut(s)	47, 149, 357, 728
MmeI	TCCRAC	2 cut(s)	340, 1184
MnlI	CCTC	5 cut(s)	72, 636, 719, 896, 1016
Mph1103I	ATGCAT	1 cut(s)	422
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	2 cut(s)	626, 1083
MslI	CAYNNNNRTG	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	625
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	426, 803
MunI	CAATTG	2 cut(s)	321, 395
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	803
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	223, 908, 952
NciI	CCSGG	1 cut(s)	426
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
NlaIII	CATG	6 cut(s)	246, 461, 575, 613, 907, 917
NlaIV	GGNNCC	5 cut(s)	69, 133, 615, 721, 799
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	2 cut(s)	246, 575
PciI	ACATGT	2 cut(s)	242, 571
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	344, 755, 857
PkrI	GCNGC	1 cut(s)	1042
PleI	GAGTC	4 cut(s)	47, 148, 357, 728
PpsI	GAGTC	4 cut(s)	47, 148, 357, 728
PscI	ACATGT	2 cut(s)	242, 571
PshBI	ATTAAT	1 cut(s)	1083
Psp6I	CCWGG	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	801
PspN4I	GGNNCC	5 cut(s)	69, 133, 615, 721, 799
PspPI	GGNCC	1 cut(s)	1139
PsuI	RGATCY	2 cut(s)	719, 797
RsaI	GTAC	4 cut(s)	168, 247, 1097, 1112
RsaNI	GTAC	4 cut(s)	167, 246, 1096, 1111
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	626, 1083
SatI	GCNGC	1 cut(s)	1041
Sau3AI	GATC	8 cut(s)	201, 389, 526, 719, 797, 937, 1152, 1156
Sau96I	GGNCC	1 cut(s)	1139
SchI	GAGTC	4 cut(s)	47, 149, 357, 728
ScrFI	CCNGG	2 cut(s)	426, 803
SfaNI	GCATC	3 cut(s)	220, 407, 964
SfcI	CTRYAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	625, 925
SmoI	CTYRAG	2 cut(s)	625, 925
SsiI	CCGC	3 cut(s)	224, 539, 561
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	4 cut(s)	549, 1001, 1187, 1192
StyD4I	CCNGG	2 cut(s)	424, 801
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	637, 714, 1165
TaqI	TCGA	3 cut(s)	529, 758, 1155
TatI	WGTACW	3 cut(s)	245, 1095, 1110
TfiI	GAWTC	3 cut(s)	344, 755, 857
Tru1I	TTAA	2 cut(s)	626, 1083
Tru9I	TTAA	2 cut(s)	626, 1083
TscAI	CASTG	2 cut(s)	262, 529
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	1040
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	141, 761, 930, 1068
TspGWI	ACGGA	2 cut(s)	194, 847
TspRI	CASTG	2 cut(s)	262, 529
Vha464I	CTTAAG	1 cut(s)	625
VspI	ATTAAT	1 cut(s)	1083
XapI	RAATTY	4 cut(s)	370, 472, 892, 1115
XceI	RCATGY	2 cut(s)	246, 575
XmiI	GTMKAC	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	4 cut(s)	549, 1001, 1187, 1192
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.