Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006066

Physical Location & Seq

Genomic Coordinates Reverse (-)

58268549 .. 58272485

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGAATCCACACGAGTTTCACCAAGTGTTATAGCAAAGTTAATGGGTCTTGCTGAATCGCCACAGCAGCAGCCTGTTCAAAAAAGAAGAAGAGTACTATCTGAGAATTACTTTCACAGAGTTGCTTCTATTGGCGTCAGAGAGAAATGTCATTCATTGAGGTCGGTAGTAGGCCATCAAGATTGTAAGGATGTCTTTGAAGTTGTAAGTCCACTAAAAGGGGATAATGACTTTAACCTGTCAGTTCATAAGCGAACAGAAAACTCGGGATTGTCAGAATTGAAGATGGAGACTAGGCAGGAGGAATTTCAAGTGTCATCAGAGAAGTATGAATGTCTACCAGGGGAAGTTGGTCTTGATGGCTTACATAAGTTTTTGAGGTCTCCATTGAAGTCAAATAGAAAAGGATGCTCCCCCAGTACTGGAGTTGTTGCTTTGAAACCCAAGCATGGCTTGGCTGACAGTTCTGCAAGATCTTTCCCTCCAATGAGTTCCCTTGAAGCTTATCAGTTAGTTGATGAGAAGTGCGCCAAGTTTCCTAGTCCTAGCAATGGGAAGATACATGGTAAAGGAATAGAACCAATCGGAAAGGTATCAAGGCCAAGGTCCAGAGGTGGCAACTCCATTGCAATGGCATCTGAACTCCTGAGGTCTCCTTCCTTGAATTTATCTGATCGGAGGAACCAATACCAGTCTTTTTCTTATTCAGATGAATCATACGTAGCCAGGGAAGCCAAAGAGCAACTATCAGAACAATGGAAGAAGACTGAGAAGTTTGAAGGGTGTGGAAGGGCTGACAGAGGCATTACCCTTGGCGATTTACTTGCCATGCCTGTCCATGAAATAGGGCCAAGAAACTTGAATTACAAGCTTGGTATGCATTTTCGACCAAGAAAAAAGCCTGTTAAGCATGATCTGAAGGACCTGGACCTCAGTAAGTTTAGAAAACATCAAGATAAATATGAAGCTCTCTGTAATGAGTGGCCTTTCACGCCTAAAAGGTCTGTCAATTGGGCGCAGAGCAGGTCATGTGAGTACAAGTTCAACCATAAGGATCATTCAAGACCTATAAATTTGAGAACCAACAATAAGAAATTTCAATCTTTTCCCAGCCTGGAATCAGAAGGTAGTTTTACGGTAGAAAATACTTGCATGGTCCACAATGATCTGAAGAATGGAACTGAGGAGAAAGACAGTAATACTACAGATACTTCAGTCCAAAAGGAAACATCCATGGAAGTTGATGAAGAAAGCAATTTTTCTTTGCACTGCTTCACCACGTCAGATTGTATGGCAAGCTTGGAGGATGTTTACCAGCCTAGTCCAGTTTCAGTTCTGGAACCACTATTTAGAGGAGATAATTCACCTTCGCCGGAACGCTTGGGAAGTGTCAATGTTGACACCAGTGGTGAGTTTACTAGAAGGCCTTTTCTCTATTATATCACTGTAACTTATATGTCCATGCTTTTGTTTTGTTTTGTATTTCCCTATTTCGTTTTTCATTTTCTATTTATATCCGTCCTATGTTTGTTTATGCAACTTCATTCTGAAATCAGAATACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

521

Amino Acids

59.29

Weight (kDa)

8.63

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435
fragaria_vesca	FvH4_7g21020
malus_domestica	MD01G1120100.v1.1 MD01G1120200.v1.1 MD07G1189400.v1.1
prunus_persica	Prupe.2G227000_v2.0.a1 Prupe.2G227000_v2.0.a1
pyrus_communis	pycom01g14670 pycom07g17920
rosa_chinensis	RchiOBHm_Chr1g0365411
rosa_laevigata	RLG00000027424
rosa_multiflora	Rmu_sc0008527.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291250
rosa_rugosa	Rorug01G0321700 Rorug01G0321800 Rorug01G0321900 Rorug01G0322000
rosa_samantha	Rh1AG330700 Rh1BG292200 Rh1CG308700 Rh1DG323800
rosa_wichuraiana	Rw1G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1014
AccI	GTMKAC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	1062
AcsI	RAATTY	4 cut(s)	305, 664, 1072, 1094
AcuI	CTGAAG	3 cut(s)	938, 1190, 1197
AcyI	GRCGYC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	96, 421, 1037
AfiI	CCNNNNNNNGG	4 cut(s)	218, 422, 449, 551
AjiI	CACGTC	1 cut(s)	1281
AjnI	CCWGG	4 cut(s)	340, 725, 924, 1113
AluBI	AGCT	4 cut(s)	503, 871, 968, 1299
AluI	AGCT	4 cut(s)	503, 871, 968, 1299
Alw26I	GTCTC	3 cut(s)	284, 387, 657
AlwI	GGATC	1 cut(s)	1062
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	5 cut(s)	172, 599, 848, 983, 1424
ApeKI	GCWGC	2 cut(s)	67, 70
ApoI	RAATTY	4 cut(s)	305, 664, 1072, 1094
AspLEI	GCGC	2 cut(s)	530, 1018
AspS9I	GGNCC	5 cut(s)	606, 848, 922, 928, 1156
AsuHPI	GGTGA	4 cut(s)	12, 1267, 1356, 1421
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	4 cut(s)	606, 922, 928, 1156
AxyI	CCTNAGG	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	1200, 1233
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	79, 82
BccI	CCATC	3 cut(s)	183, 280, 353
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	4 cut(s)	342, 727, 926, 1115
BcoDI	GTCTC	3 cut(s)	284, 387, 657
BfaI	CTAG	5 cut(s)	294, 540, 546, 1320, 1419
BfmI	CTRYAG	1 cut(s)	1203
BfuAI	ACCTGC	1 cut(s)	1014
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	2 cut(s)	68, 71
BlsI	GCNGC	2 cut(s)	69, 72
BmcAI	AGTACT	2 cut(s)	96, 421
Bme1390I	CCNGG	4 cut(s)	342, 727, 926, 1115
Bme18I	GGWCC	4 cut(s)	606, 922, 928, 1156
BmeT110I	CYCGRG	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	1281
BmgT120I	GGNCC	5 cut(s)	606, 848, 922, 928, 1156
BmiI	GGNNCC	2 cut(s)	683, 1341
BmrFI	CCNGG	4 cut(s)	342, 727, 926, 1115
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	398, 644
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	770
BpmI	CTGGAG	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	721
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	2 cut(s)	387, 657
BsaJI	CCNNGG	5 cut(s)	341, 602, 726, 811, 1233
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 422, 449, 551
Bse1I	ACTGG	5 cut(s)	417, 427, 691, 1325, 1404
Bse21I	CCTNAGG	1 cut(s)	647
Bse3DI	GCAATG	3 cut(s)	556, 624, 636
BseBI	CCWGG	4 cut(s)	342, 727, 926, 1115
BseDI	CCNNGG	5 cut(s)	341, 602, 726, 811, 1233
BseGI	GGATG	4 cut(s)	196, 413, 1229, 1312
BseLI	CCNNNNNNNGG	4 cut(s)	218, 422, 449, 551
BseMI	GCAATG	3 cut(s)	556, 624, 636
BseMII	CTCAG	5 cut(s)	93, 638, 759, 946, 1173
BseNI	ACTGG	5 cut(s)	417, 427, 691, 1325, 1404
BseRI	GAGGAG	2 cut(s)	1199, 1368
BseXI	GCAGC	2 cut(s)	79, 82
BseYI	CCCAGC	1 cut(s)	1109
BshFI	GGCC	5 cut(s)	174, 601, 850, 985, 1426
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	1373
BslI	CCNNNNNNNGG	4 cut(s)	218, 422, 449, 551
BsmAI	GTCTC	3 cut(s)	284, 387, 657
BsnI	GGCC	5 cut(s)	174, 601, 850, 985, 1426
Bso31I	GGTCTC	2 cut(s)	387, 657
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	5 cut(s)	473, 673, 913, 1054, 1165
Bsp19I	CCATGG	1 cut(s)	1233
BspANI	GGCC	5 cut(s)	174, 601, 850, 985, 1426
BspCNI	CTCAG	5 cut(s)	94, 639, 760, 945, 1174
BspLI	GGNNCC	2 cut(s)	683, 1341
BspMI	ACCTGC	1 cut(s)	1014
BspPI	GGATC	1 cut(s)	1062
BspTNI	GGTCTC	2 cut(s)	387, 657
BsrDI	GCAATG	3 cut(s)	556, 624, 636
BsrI	ACTGG	5 cut(s)	417, 427, 691, 1325, 1404
BssECI	CCNNGG	5 cut(s)	341, 602, 726, 811, 1233
BssMI	GATC	5 cut(s)	473, 673, 913, 1054, 1165
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	3 cut(s)	602, 811, 1233
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	4 cut(s)	342, 727, 926, 1115
Bst4CI	ACNGT	4 cut(s)	464, 1138, 1196, 1447
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	721
BstC8I	GCNNGC	1 cut(s)	1297
BstDEI	CTNAG	5 cut(s)	102, 647, 768, 932, 1182
BstDSI	CCRYGG	1 cut(s)	1233
BstF5I	GGATG	4 cut(s)	196, 413, 1229, 1312
BstHHI	GCGC	2 cut(s)	530, 1018
BstKTI	GATC	5 cut(s)	476, 676, 916, 1057, 1168
BstMAI	GTCTC	3 cut(s)	284, 387, 657
BstMBI	GATC	5 cut(s)	473, 673, 913, 1054, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 731, 877, 907, 991
BstNI	CCWGG	4 cut(s)	342, 727, 926, 1115
BstSCI	CCNGG	4 cut(s)	340, 725, 924, 1113
BstSFI	CTRYAG	1 cut(s)	1203
BstSNI	TACGTA	1 cut(s)	721
BstV1I	GCAGC	2 cut(s)	79, 82
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	473
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	5 cut(s)	174, 601, 850, 985, 1426
BtgI	CCRYGG	1 cut(s)	1233
BtrI	CACGTC	1 cut(s)	1281
BtsCI	GGATG	4 cut(s)	196, 413, 1229, 1312
BtsI	GCAGTG	1 cut(s)	1267
BtsIMutI	CAGTG	3 cut(s)	1267, 1411, 1443
BveI	ACCTGC	1 cut(s)	1014
Cac8I	GCNNGC	1 cut(s)	1297
CfoI	GCGC	2 cut(s)	530, 1018
Cfr13I	GGNCC	5 cut(s)	606, 848, 922, 928, 1156
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	3 cut(s)	95, 420, 1036
CviAII	CATG	9 cut(s)	449, 563, 829, 839, 911, 1029, 1153, 1234, 1462
CviQI	GTAC	3 cut(s)	95, 420, 1036
DdeI	CTNAG	5 cut(s)	102, 647, 768, 932, 1182
DpnI	GATC	5 cut(s)	475, 675, 915, 1056, 1167
DpnII	GATC	5 cut(s)	473, 673, 913, 1054, 1165
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	721
Eco130I	CCWWGG	3 cut(s)	602, 811, 1233
Eco147I	AGGCCT	1 cut(s)	1426
Eco31I	GGTCTC	2 cut(s)	387, 657
Eco47I	GGWCC	4 cut(s)	606, 922, 928, 1156
Eco57I	CTGAAG	3 cut(s)	938, 1190, 1197
Eco81I	CCTNAGG	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	4 cut(s)	340, 725, 924, 1113
EcoT14I	CCWWGG	3 cut(s)	602, 811, 1233
EcoT22I	ATGCAT	1 cut(s)	882
ErhI	CCWWGG	3 cut(s)	602, 811, 1233
FaeI	CATG	9 cut(s)	452, 566, 832, 842, 914, 1032, 1156, 1237, 1465
FalI	AAGNNNNNCTT	6 cut(s)	179, 211, 339, 371, 437, 469
FatI	CATG	9 cut(s)	448, 562, 828, 838, 910, 1028, 1152, 1233, 1461
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	68, 71
FokI	GGATG	4 cut(s)	203, 420, 1216, 1319
Fsp4HI	GCNGC	2 cut(s)	68, 71
FspBI	CTAG	5 cut(s)	294, 540, 546, 1320, 1419
GlaI	GCGC	2 cut(s)	529, 1017
GluI	GCNGC	2 cut(s)	68, 71
GsaI	CCCAGC	1 cut(s)	1113
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	5 cut(s)	174, 601, 850, 985, 1426
HapII	CCGG	1 cut(s)	1373
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	530, 1018
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	9 cut(s)	452, 566, 832, 842, 914, 1032, 1156, 1237, 1465
Hin6I	GCGC	2 cut(s)	528, 1016
HinP1I	GCGC	2 cut(s)	528, 1016
HincII	GTYRAC	1 cut(s)	1399
HindII	GTYRAC	1 cut(s)	1399
HindIII	AAGCTT	3 cut(s)	501, 869, 1297
HinfI	GANTC	4 cut(s)	5, 56, 713, 1118
HpaII	CCGG	1 cut(s)	1373
HphI	GGTGA	4 cut(s)	12, 1267, 1356, 1421
Hpy166II	GTNNAC	6 cut(s)	212, 338, 1159, 1312, 1399, 1416
Hpy188III	TCNNGA	8 cut(s)	179, 267, 356, 609, 646, 953, 1062, 1337
Hpy8I	GTNNAC	6 cut(s)	212, 338, 1159, 1312, 1399, 1416
HpyAV	CCTTC	7 cut(s)	666, 773, 783, 913, 1118, 1377, 1416
HpyCH4III	ACNGT	4 cut(s)	464, 1138, 1196, 1447
HpyCH4IV	ACGT	2 cut(s)	720, 1280
HpyCH4V	TGCA	6 cut(s)	470, 629, 880, 1152, 1267, 1537
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 731, 877, 907, 991
HpyF3I	CTNAG	5 cut(s)	102, 647, 768, 932, 1182
HpySE526I	ACGT	2 cut(s)	720, 1280
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	9 cut(s)	452, 566, 832, 842, 914, 1032, 1156, 1237, 1465
HspAI	GCGC	2 cut(s)	528, 1016
Kzo9I	GATC	5 cut(s)	473, 673, 913, 1054, 1165
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	2 cut(s)	79, 82
LweI	GCATC	2 cut(s)	398, 644
MaeI	CTAG	5 cut(s)	294, 540, 546, 1320, 1419
MaeII	ACGT	2 cut(s)	720, 1280
MaeIII	GTNAC	1 cut(s)	1447
MalI	GATC	5 cut(s)	475, 675, 915, 1056, 1167
MboI	GATC	5 cut(s)	473, 673, 913, 1054, 1165
MboII	GAAGA	8 cut(s)	99, 102, 295, 568, 772, 775, 1183, 1259
MfeI	CAATTG	1 cut(s)	1009
MflI	RGATCY	1 cut(s)	473
Mph1103I	ATGCAT	1 cut(s)	882
MseI	TTAA	3 cut(s)	41, 234, 906
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	1 cut(s)	1373
MspR9I	CCNGG	4 cut(s)	342, 727, 926, 1115
MunI	CAATTG	1 cut(s)	1009
MvaI	CCWGG	4 cut(s)	342, 727, 926, 1115
MwoI	GCNNNNNNNGC	5 cut(s)	67, 731, 877, 907, 991
NcoI	CCATGG	1 cut(s)	1233
NdeII	GATC	5 cut(s)	473, 673, 913, 1054, 1165
NlaIII	CATG	9 cut(s)	452, 566, 832, 842, 914, 1032, 1156, 1237, 1465
NlaIV	GGNNCC	2 cut(s)	683, 1341
NsiI	ATGCAT	1 cut(s)	882
PceI	AGGCCT	1 cut(s)	1426
PfeI	GAWTC	4 cut(s)	5, 56, 713, 1118
PkrI	GCNGC	2 cut(s)	69, 72
Ppu21I	YACGTR	1 cut(s)	721
PpuMI	RGGWCCY	1 cut(s)	922
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	4 cut(s)	340, 725, 924, 1113
PspFI	CCCAGC	1 cut(s)	1109
PspGI	CCWGG	4 cut(s)	340, 725, 924, 1113
PspN4I	GGNNCC	2 cut(s)	683, 1341
PspPI	GGNCC	5 cut(s)	606, 848, 922, 928, 1156
PspPPI	RGGWCCY	1 cut(s)	922
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	3 cut(s)	96, 421, 1037
RsaNI	GTAC	3 cut(s)	95, 420, 1036
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	41, 234, 906
SatI	GCNGC	2 cut(s)	68, 71
Sau3AI	GATC	5 cut(s)	473, 673, 913, 1054, 1165
Sau96I	GGNCC	5 cut(s)	606, 848, 922, 928, 1156
ScaI	AGTACT	2 cut(s)	96, 421
ScrFI	CCNGG	4 cut(s)	342, 727, 926, 1115
SfaNI	GCATC	2 cut(s)	398, 644
SfcI	CTRYAG	1 cut(s)	1203
SinI	GGWCC	4 cut(s)	606, 922, 928, 1156
SmiMI	CAYNNNNRTG	1 cut(s)	629
SnaBI	TACGTA	1 cut(s)	721
SseBI	AGGCCT	1 cut(s)	1426
SspMI	CTAG	5 cut(s)	294, 540, 546, 1320, 1419
StuI	AGGCCT	1 cut(s)	1426
StyD4I	CCNGG	4 cut(s)	340, 725, 924, 1113
StyI	CCWWGG	3 cut(s)	602, 811, 1233
TaaI	ACNGT	4 cut(s)	464, 1138, 1196, 1447
TaiI	ACGT	2 cut(s)	723, 1283
TaqI	TCGA	1 cut(s)	886
TatI	WGTACW	3 cut(s)	94, 419, 1035
TfiI	GAWTC	4 cut(s)	5, 56, 713, 1118
Tru1I	TTAA	3 cut(s)	41, 234, 906
Tru9I	TTAA	3 cut(s)	41, 234, 906
TscAI	CASTG	3 cut(s)	1274, 1411, 1450
TseI	GCWGC	2 cut(s)	67, 70
TspDTI	ATGAA	9 cut(s)	144, 236, 345, 726, 855, 978, 1260, 1490, 1532
TspGWI	ACGGA	1 cut(s)	1507
TspRI	CASTG	3 cut(s)	1274, 1411, 1450
VpaK11BI	GGWCC	4 cut(s)	606, 922, 928, 1156
XapI	RAATTY	4 cut(s)	305, 664, 1072, 1094
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	337
XspI	CTAG	5 cut(s)	294, 540, 546, 1320, 1419
ZrmI	AGTACT	2 cut(s)	96, 421
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.