Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006066

Physical Location & Seq

Genomic Coordinates Forward (+)

44082362 .. 44082658

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATGTTTAGAGTGAATGATGTGGGTGGGTCTCCCGGCACTGTCGGGTCTGAAGAAAGCTCCTCGGATGGGTCCTGGTTGGGAGGGTGGGTTGGGAAAGACAAAGAGCTTGAGCCAGCGAGCAGCGGAAGCGAAACCAAGGTTCTGGAGACTTTTGATGCGCCTCCGGTGCCTAGTTTTGATTCGGACCTCGAAAACCGCGGACATGTGGGCAGATCTGAAGAAGTATTGAAAATTGTGGAGGAGGTGCTGGTGAGAGGAATGAGAGTTGTTATGGTGGTAGTGGGTGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

98

Amino Acids

10.42

Weight (kDa)

4.59

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435 AT2G39435
fragaria_vesca	FvH4_7g21020
malus_domestica	MD01G1120100.v1.1 MD01G1120200.v1.1 MD07G1189400.v1.1
prunus_persica	Prupe.2G227000_v2.0.a1 Prupe.2G227000_v2.0.a1
pyrus_communis	pycom01g14670 pycom07g17920
rosa_chinensis	RchiOBHm_Chr1g0365411
rosa_laevigata	RLG00000027424
rosa_multiflora	Rmu_sc0008527.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291250
rosa_rugosa	Rorug01G0321700 Rorug01G0321800 Rorug01G0321900 Rorug01G0322000
rosa_samantha	Rh1AG330700 Rh1BG292200 Rh1CG308700 Rh1DG323800
rosa_wichuraiana	Rw1G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	126, 199, 201
AcuI	CTGAAG	2 cut(s)	72, 240
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	2 cut(s)	60, 109
AluI	AGCT	2 cut(s)	60, 109
Alw26I	GTCTC	2 cut(s)	36, 143
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	72, 187
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	72, 187
BanI	GGYRCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	36, 143
BfaI	CTAG	1 cut(s)	174
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	36, 76
Bme18I	GGWCC	2 cut(s)	72, 187
BmgT120I	GGNCC	2 cut(s)	72, 187
BmiI	GGNNCC	2 cut(s)	73, 171
BmrFI	CCNGG	2 cut(s)	36, 76
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	63, 138, 199
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	63, 138, 199
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	52, 257
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	36, 167
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	36, 143
Bso31I	GGTCTC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	3 cut(s)	126, 199, 201
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	73, 171
BspT107I	GGYRCC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	63, 138, 199
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	117, 121
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	36, 143
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 169
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	34, 74
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	117, 121
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	72, 187
Cfr42I	CCGCGG	1 cut(s)	202
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	3 cut(s)	60, 109, 115
CviKI_1	RGCY	3 cut(s)	60, 109, 115
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	72, 187
Eco57I	CTGAAG	2 cut(s)	72, 240
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	209
FaiI	YATR	2 cut(s)	207, 275
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	167
HapII	CCGG	2 cut(s)	36, 167
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	36, 167
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	52, 67, 187, 220
Hpy188III	TCNNGA	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 169
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	161
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	7 cut(s)	49, 61, 88, 129, 131, 180, 236
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	174
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	2 cut(s)	65, 233
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	1 cut(s)	234
MnlI	CCTC	7 cut(s)	73, 77, 174, 200, 235, 238, 251
MspA1I	CMGCKG	2 cut(s)	126, 201
MspI	CCGG	2 cut(s)	36, 167
MspR9I	CCNGG	2 cut(s)	36, 76
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	129, 169
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	73, 171
NspI	RCATGY	1 cut(s)	209
PciI	ACATGT	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	72
PscI	ACATGT	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	73, 171
PspPI	GGNCC	2 cut(s)	72, 187
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	215
SacII	CCGCGG	1 cut(s)	202
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	72, 187
ScrFI	CCNGG	2 cut(s)	36, 76
SetI	ASST	5 cut(s)	62, 111, 144, 192, 249
SfaNI	GCATC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	72, 187
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	3 cut(s)	126, 199, 201
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	34, 74
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	123
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	72, 187
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.