Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011118

Physical Location & Seq

Genomic Coordinates Forward (+)

23515438 .. 23516147

Gene Structure 710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1121700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAAACAACAAACATGCTTCTTGATGAATGCCTCACAGCGAAGGTGGCTGATTTTGGATTGTCAAATTTAGGCCCTGCTTTGGATCAAACACATGTGAGCACTGCAGTGAAGGGGAGCTTTGGATATCTTGATCTGGATTACTATCGCCGGCAGCAGCTAACGGAGAAGTTAGATGTGTACTCTTTTGGAGTAGTTTTACTAGAGGTCTTATGTGCTAGGCCACCTATATACCCTGCCCTCCCTCGAGAGCAAGTTAACATAGCAGAATGGGCAATGAGTTGGCAAAAGAAGGGAAGATTAGAGAAAATTATAGACCCCCGTCTTCAAGGACATAAGTGTTTGGCTGAATATGGAGTTGAGAGGCCAACAATGGGGGATGTTTTGTGGAATTTGGAGTACTCTCTTCAACTGCAAGAGGCTTCTACACAGAGCTTTTCGTCCAAAAACATTGCGAATTACATTCCGGATATGCCAGAATGGCTTCCGGAAATTCGAAATGGCAATGGTTGTGGTGGTGAGGGCATTAGTGATGAAGAATCTGATGCAACTTCAAGTGCAGTCTTTTCAGAGTTATTGGATCCAAGAGGGAGAGAGGAGCTGATTCATCACACATACTTTAACTTACTATACCAATATATTGTTTCTTCTTTATTCTTAATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

223

Amino Acids

25.08

Weight (kDa)

4.81

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 80	6.3e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 87	3.9e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30570
fragaria_vesca	FvH4_3g10180
malus_domestica	MD01G1121700.v1.1 MD10G1252700.v1.1
prunus_persica	Prupe.4G090800_v2.0.a1
pyrus_communis	pycom05g25440 pycom10g20840
rosa_chinensis	RchiOBHm_Chr5g0016361
rosa_laevigata	RLG00000032246
rosa_multiflora	Rmu_sc0001235.1_g000034 Rmu_sc0012840.1_g000004 Rmu_sc0023137.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060500 Rroxscaffold_1G00060510
rosa_rugosa	Rorug05G0031900
rosa_samantha	Rh5AG125400 Rh5BG124400 Rh5CG136600 Rh5DG124100
rosa_wichuraiana	Rw5G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	466, 487
AclWI	GGATC	3 cut(s)	93, 575, 588
AcsI	RAATTY	3 cut(s)	67, 391, 492
AfaI	GTAC	2 cut(s)	182, 401
AfiI	CCNNNNNNNGG	2 cut(s)	82, 374
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	329, 410, 555
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	4 cut(s)	120, 160, 435, 601
AluI	AGCT	4 cut(s)	120, 160, 435, 601
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	3 cut(s)	93, 575, 588
Ama87I	CYCGRG	1 cut(s)	246
Aor13HI	TCCGGA	2 cut(s)	466, 487
AoxI	GGCC	3 cut(s)	73, 221, 365
ApeKI	GCWGC	2 cut(s)	154, 157
ApoI	RAATTY	3 cut(s)	67, 391, 492
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	166, 169
BfaI	CTAG	2 cut(s)	203, 219
BfmI	CTRYAG	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	155, 158
BlsI	GCNGC	2 cut(s)	156, 159
BmcAI	AGTACT	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	1 cut(s)	535
BoxI	GACNNNNGTC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	144
BsaWI	WCCGGW	2 cut(s)	466, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 374
Bse118I	RCCGGY	1 cut(s)	150
Bse3DI	GCAATG	3 cut(s)	282, 450, 511
Bse8I	GATNNNNATC	1 cut(s)	144
BseAI	TCCGGA	2 cut(s)	466, 487
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	82, 374
BseMI	GCAATG	3 cut(s)	282, 450, 511
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	166, 169
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	3 cut(s)	75, 223, 367
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	151, 467, 488
BslI	CCNNNNNNNGG	2 cut(s)	82, 374
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	75, 223, 367
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp13I	TCCGGA	2 cut(s)	466, 487
Bsp143I	GATC	3 cut(s)	85, 133, 580
BspANI	GGCC	3 cut(s)	75, 223, 367
BspEI	TCCGGA	2 cut(s)	466, 487
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	3 cut(s)	93, 575, 588
BspT104I	TTCGAA	1 cut(s)	496
BsrDI	GCAATG	3 cut(s)	282, 450, 511
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssMI	GATC	3 cut(s)	85, 133, 580
Bst6I	CTCTTC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	3 cut(s)	88, 136, 583
BstMBI	GATC	3 cut(s)	85, 133, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 272, 481
BstNSI	RCATGY	2 cut(s)	19, 98
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	166, 169
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	3 cut(s)	75, 223, 367
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	2 cut(s)	102, 114
BtsIMutI	CAGTG	2 cut(s)	102, 114
Cac8I	GCNNGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	181, 400
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	2 cut(s)	16, 95
CviQI	GTAC	2 cut(s)	181, 400
DpnI	GATC	3 cut(s)	87, 135, 582
DpnII	GATC	3 cut(s)	85, 133, 580
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco32I	GATATC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	128
FaeI	CATG	2 cut(s)	19, 98
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	2 cut(s)	15, 94
Fnu4HI	GCNGC	2 cut(s)	155, 158
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	155, 158
FspBI	CTAG	2 cut(s)	203, 219
GluI	GCNGC	2 cut(s)	155, 158
HaeIII	GGCC	3 cut(s)	75, 223, 367
HapII	CCGG	3 cut(s)	151, 467, 488
Hin1II	CATG	2 cut(s)	19, 98
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	539, 604
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	3 cut(s)	151, 467, 488
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	181, 259
Hpy188I	TCNGA	2 cut(s)	544, 571
Hpy188III	TCNNGA	6 cut(s)	23, 131, 137, 248, 467, 488
Hpy8I	GTNNAC	2 cut(s)	181, 259
HpyAV	CCTTC	3 cut(s)	37, 106, 286
HpyCH4V	TGCA	4 cut(s)	107, 415, 548, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 272, 481
Hsp92II	CATG	2 cut(s)	19, 98
Kpn2I	TCCGGA	2 cut(s)	466, 487
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	85, 133, 580
LmnI	GCTCC	2 cut(s)	117, 598
LpnPI	CCDG	7 cut(s)	90, 122, 164, 249, 480, 489, 501
Lsp1109I	GCAGC	2 cut(s)	166, 169
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	203, 219
MalI	GATC	3 cut(s)	87, 135, 582
MboI	GATC	3 cut(s)	85, 133, 580
MboII	GAAGA	5 cut(s)	309, 317, 398, 548, 639
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	6 cut(s)	67, 309, 391, 457, 492, 660
MnlI	CCTC	9 cut(s)	44, 199, 251, 255, 357, 412, 514, 581, 589
MroI	TCCGGA	2 cut(s)	466, 487
MroNI	GCCGGC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	3 cut(s)	258, 621, 659
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	3 cut(s)	151, 467, 488
Mva1269I	GAATGC	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	47, 272, 481
NaeI	GCCGGC	1 cut(s)	152
NdeII	GATC	3 cut(s)	85, 133, 580
NgoMIV	GCCGGC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	19, 98
NlaIV	GGNNCC	1 cut(s)	582
NspI	RCATGY	2 cut(s)	19, 98
NspV	TTCGAA	1 cut(s)	496
OliI	CACNNNNGTG	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	246
PciI	ACATGT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	539, 604
PkrI	GCNGC	2 cut(s)	156, 159
PscI	ACATGT	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	2 cut(s)	182, 401
RsaNI	GTAC	2 cut(s)	181, 400
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	258, 621, 659
SatI	GCNGC	2 cut(s)	155, 158
Sau3AI	GATC	3 cut(s)	85, 133, 580
Sau96I	GGNCC	1 cut(s)	74
ScaI	AGTACT	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	48, 122, 162, 210, 229, 437, 603
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	496
SlaI	CTCGAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	6 cut(s)	67, 309, 391, 457, 492, 660
SspMI	CTAG	2 cut(s)	203, 219
TaqI	TCGA	2 cut(s)	247, 496
TasI	AATT	6 cut(s)	67, 309, 391, 457, 492, 660
TatI	WGTACW	2 cut(s)	180, 399
TfiI	GAWTC	2 cut(s)	539, 604
Tru1I	TTAA	3 cut(s)	258, 621, 659
Tru9I	TTAA	3 cut(s)	258, 621, 659
TscAI	CASTG	2 cut(s)	109, 114
TseI	GCWGC	2 cut(s)	154, 157
TspDTI	ATGAA	5 cut(s)	17, 42, 549, 596, 654
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	109, 114
XapI	RAATTY	3 cut(s)	67, 391, 492
XceI	RCATGY	2 cut(s)	19, 98
XhoI	CTCGAG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	2 cut(s)	203, 219
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.