Rorug05G0031900

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010539
Physical Location & Seq
Reverse (-)
2044929 .. 2049880
4952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0031900.1

Sequence Viewer

Length: 1962 bp
ATGGCTGACCTTCTGGTAGGACACTTGGTTCCCTTTAGCAACCACGTCCAAGAAGACGCTTCAATCCCCAAAATACCCCTCTCCCGGGGCCGCAATTCCATCGGCCGCAACTCCGCCCCTTCCCTCACCGACAAGCGCCTCAGCCGCAACCACCTCTCCCTCTCCGCCGACGCCTCCTCCGCCGATTTGGTCGTGGAGGGAAGCAATCCGGTTGTGGTAACTAGCGGAAATGATAGGAAGAAACTGTATCATAAAGAAAGTATGACGATTCGAGACGGTGATATTATAGAGCTGATTCCAGGGCAGTATATTTTTCAGTATAGGAAATTGTGTGGTGATAGTTATGAGAAGTCTTCAAATGGTGAAGAGAAGGCTGAGGAGTCTAGTCGAAAGCGGTCACATCAGTTAGAATGTGGGGAGAATGGTTCGAATTTGAAGCGTTTTAAGGGTGAGGTGGAAGGGAAGAGTGATGATGGTGGTGGTCGTGTGGAGGCGATACGGCATTTTCGTGTTCCTAAGGATAAGTTACCACAGACGTTTCGGCTTTTGAATGTGCAAGGACTGCCCCCGTGGGCGAATACCTCGTGTGTTTCTATAAAGGATGTGATTCAGGGAGACATCCTTTTTGCTGTCCTTTCCAATTACATGGTAGACCTTGATTGGCTGATACCTGCTTGTCCAACAGTTGCAAAAATCCCACATGTATTGGTTGTTCATGGTGAGGGTGATGGTACACTGGATTATATGAAGAGAAAGAAACCTGCAAATTGGATTCTACACAAACCACCATTGCCTATTTCATTTGGGACACACCACTCAAAGGCCATGCTTCTTGTTTATCCTCGAGGAGTGAGAATAATAGTACATACAGCAAACTTAATATTTGTTGATTGGAACAACAAAAGTCAAGGTTTGTGGATGCAAGATTTTCCCTGGAAAGATCAAAGTAATCCAAGCAAAGGTTGTGGATTTGAACATGACTTAATTGACTATCTCAGTGCACTGAAGTGGCCTGAGTTTTCTGTTAATTTGCCTACCCTGGGAACCTTCAATATAAATCCAGGATTTTTCAAGAAATTCGATTACAGCAGTGCAGCAGTGAGGCTAATTGCATCTGTCCCTGGATATCATACCGGTAATAACATGAAAAAGTGGGGACATATGAAACTACGTACTGTTCTCCAGGAGTGTACTTTTGATAAAGAGTTTCGGAAATCTCCTCTTGCTTATCAGTTCTCCTCCCTAGGTTCTTTGGATGAGAAATGGATGGCTGAGCTTGCACATTCAATGTCATCAGGTTTTTCGGATGATAAAACTCCTCTCGGTCCTGGGGAGCCACGTATAATATGGCCCACAGTAGAAGATGTCAGATGCTCTATAGAGGGTTATGCTGCTGGAAATGCTGTTCCAAGTCCAGCAAAGAATGTGGATAAAGATTTCTTGAAGAAGTACTGGGCAAGATGGAAGGCAAGCCACACTGGCCGCTGTCGTGCAATGCCACATATAAAGACATTTACTCGATACAGTGGTCAGAAACTTGCTTGGTTTTTGCTAACATCAGCGAATCTTAGCAAAGCTGCATGGGGAGCTCTCCAGAAGAATAATTCTCAACTCATGATCCGTTCTTATGAGCTTGGGGTGCTGTTTCTACCATATAAAACACGAAGTTCTGGATTTTCTTGTACCAGTAATGGGGTTCCATCTGAGGATAAATCTGAAGAGTCAGATAATTCGGAATCAAGGAGAAATAAACTAGTGACTCTGAACTGGCAAGGGAACAGGAACACAGATTCATCATCTGAAGTAATCACATTGCCTGTGCCCTATGAACTCCCTCCTCAACCATACACCACCCAAGATGTTCCTTGGTCATGGGACCGGCGATACACCAAGAAAGATGTTTATGGTCAAGTTTGGCCGCGGCAAGTTCAGCTGTATGCAGCAGCTCTTCAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

653

Amino Acids

73.46

Weight (kDa)

9.11

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tyr-DNA_phospho PF06087 180 - 617 9.3e-103 Tyrosyl-DNA phosphodiesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 843
Acc36I ACCTGC 2 cut(s) 679, 769
AccI GTMKAC 1 cut(s) 651
AccII CGCG 1 cut(s) 1921
AclWI GGATC 1 cut(s) 1612
AcoI YGGCCR 3 cut(s) 103, 1480, 1916
AcsI RAATTY 2 cut(s) 430, 1076
AcuI CTGAAG 3 cut(s) 1025, 1737, 1821
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 6 cut(s) 733, 864, 1174, 1192, 1451, 1684
AfiI CCNNNNNNNGG 6 cut(s) 84, 85, 820, 959, 1040, 1692
AflIII ACRYGT 1 cut(s) 700
AgeI ACCGGT 1 cut(s) 1133
AhlI ACTAGT 1 cut(s) 1753
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 7 cut(s) 298, 932, 1038, 1060, 1120, 1182, 1327
AleI CACNNNNGTG 1 cut(s) 1006
AloI GAACNNNNNNTCC 4 cut(s) 12, 44, 1389, 1421
AluBI AGCT 7 cut(s) 292, 1276, 1577, 1589, 1633, 1933, 1946
AluI AGCT 7 cut(s) 292, 1276, 1577, 1589, 1633, 1933, 1946
Alw21I GWGCWC 2 cut(s) 1003, 1591
Alw26I GTCTC 2 cut(s) 267, 609
Alw44I GTGCAC 1 cut(s) 999
AlwI GGATC 1 cut(s) 1612
Ama87I CYCGRG 2 cut(s) 84, 843
AoxI GGCC 7 cut(s) 88, 103, 822, 1010, 1349, 1480, 1916
ApaLI GTGCAC 1 cut(s) 999
ApeKI GCWGC 5 cut(s) 1094, 1391, 1577, 1940, 1943
ApoI RAATTY 2 cut(s) 430, 1076
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AsiGI ACCGGT 1 cut(s) 1133
AspA2I CCTAGG 1 cut(s) 1243
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 4 cut(s) 88, 1325, 1350, 1876
AsuC2I CCSGG 2 cut(s) 85, 86
AsuHPI GGTGA 7 cut(s) 118, 290, 347, 374, 461, 731, 737
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 84, 843
AvaII GGWCC 2 cut(s) 1325, 1876
AvrII CCTAGG 1 cut(s) 1243
AxyI CCTNAGG 1 cut(s) 516
BaeGI GKGCMC 2 cut(s) 1003, 1824
BaeI ACNNNNGTAYC 2 cut(s) 1513, 1546
BanII GRGCYC 1 cut(s) 1591
BauI CACGAG 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 60, 345
Bbv12I GWGCWC 2 cut(s) 1003, 1591
BbvCI CCTCAGC 2 cut(s) 140, 375
BbvI GCAGC 5 cut(s) 1106, 1378, 1564, 1952, 1955
BccI CCATC 6 cut(s) 107, 467, 722, 1261, 1455, 1708
BceAI ACGGC 1 cut(s) 515
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 7 cut(s) 300, 934, 1040, 1062, 1122, 1184, 1329
BcnI CCSGG 2 cut(s) 85, 86
BcoDI GTCTC 2 cut(s) 267, 609
BcuI ACTAGT 1 cut(s) 1753
BfaI CTAG 4 cut(s) 222, 384, 1244, 1754
BfmI CTRYAG 1 cut(s) 1377
BfoI RGCGCY 1 cut(s) 139
BfuAI ACCTGC 2 cut(s) 679, 769
BglI GCCNNNNNGGC 1 cut(s) 1479
BlnI CCTAGG 1 cut(s) 1243
BlpI GCTNAGC 1 cut(s) 1272
BmcAI AGTACT 1 cut(s) 1451
Bme1390I CCNGG 9 cut(s) 85, 86, 300, 934, 1040, 1062, 1122, 1184, 1329
Bme18I GGWCC 2 cut(s) 1325, 1876
BmeT110I CYCGRG 2 cut(s) 84, 843
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 4 cut(s) 88, 1325, 1350, 1876
BmiI GGNNCC 6 cut(s) 30, 89, 1045, 1335, 1698, 1877
BmrFI CCNGG 9 cut(s) 85, 86, 300, 934, 1040, 1062, 1122, 1184, 1329
BmrI ACTGGG 1 cut(s) 1462
BmsI GCATC 3 cut(s) 909, 1121, 1361
BmuI ACTGGG 1 cut(s) 1462
BpiI GAAGAC 2 cut(s) 60, 345
BpmI CTGGAG 2 cut(s) 1166, 1577
Bpu10I CCTNAGC 2 cut(s) 140, 375
Bpu1102I GCTNAGC 1 cut(s) 1272
Bpu14I TTCGAA 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 85, 86
BsaAI YACGTR 2 cut(s) 1172, 1340
BsaHI GRCGYC 1 cut(s) 171
BsaWI WCCGGW 2 cut(s) 208, 1133
BsaXI ACNNNNNCTCC 4 cut(s) 140, 161, 170, 191
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 85, 820, 959, 1040, 1692
Bse118I RCCGGY 2 cut(s) 1133, 1878
Bse1I ACTGG 5 cut(s) 741, 1457, 1483, 1686, 1772
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 3 cut(s) 788, 1500, 1811
BseBI CCWGG 7 cut(s) 300, 934, 1040, 1062, 1122, 1184, 1329
BseGI GGATG 6 cut(s) 607, 618, 924, 1261, 1272, 1312
BseLI CCNNNNNNNGG 6 cut(s) 84, 85, 820, 959, 1040, 1692
BseMI GCAATG 3 cut(s) 788, 1500, 1811
BseMII CTCAG 6 cut(s) 154, 366, 1005, 1009, 1263, 1695
BseNI ACTGG 5 cut(s) 741, 1457, 1483, 1686, 1772
BseRI GAGGAG 7 cut(s) 166, 392, 861, 1209, 1228, 1308, 1827
BseSI GKGCMC 2 cut(s) 1003, 1824
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 5 cut(s) 1106, 1378, 1564, 1952, 1955
BsgI GTGCAG 1 cut(s) 1113
Bsh1236I CGCG 1 cut(s) 1921
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 7 cut(s) 90, 105, 824, 1012, 1351, 1482, 1918
BshTI ACCGGT 1 cut(s) 1133
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 1003, 1591
BsiHKCI CYCGRG 2 cut(s) 84, 843
BsiSI CCGG 4 cut(s) 85, 209, 1134, 1879
BslFI GGGAC 4 cut(s) 820, 1103, 1170, 1889
BslI CCNNNNNNNGG 6 cut(s) 84, 85, 820, 959, 1040, 1692
BsmAI GTCTC 2 cut(s) 267, 609
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 4 cut(s) 820, 1103, 1170, 1889
BsnI GGCC 7 cut(s) 90, 105, 824, 1012, 1351, 1482, 1918
BsoBI CYCGRG 2 cut(s) 84, 843
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 1003, 1591, 1824
Bsp143I GATC 2 cut(s) 940, 1617
Bsp1720I GCTNAGC 1 cut(s) 1272
BspANI GGCC 7 cut(s) 90, 105, 824, 1012, 1351, 1482, 1918
BspCNI CTCAG 6 cut(s) 153, 367, 1006, 1008, 1264, 1696
BspFNI CGCG 1 cut(s) 1921
BspHI TCATGA 1 cut(s) 1614
BspLI GGNNCC 6 cut(s) 30, 89, 1045, 1335, 1698, 1877
BspMI ACCTGC 2 cut(s) 679, 769
BspPI GGATC 1 cut(s) 1612
BspQI GCTCTTC 1 cut(s) 1953
BspT104I TTCGAA 1 cut(s) 428
BsrDI GCAATG 3 cut(s) 788, 1500, 1811
BsrFI RCCGGY 2 cut(s) 1133, 1878
BsrI ACTGG 5 cut(s) 741, 1457, 1483, 1686, 1772
BssAI RCCGGY 2 cut(s) 1133, 1878
BssMI GATC 2 cut(s) 940, 1617
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 1243, 1865
Bst2BI CACGAG 1 cut(s) 583
Bst2UI CCWGG 7 cut(s) 300, 934, 1040, 1062, 1122, 1184, 1329
Bst4CI ACNGT 6 cut(s) 246, 278, 685, 1177, 1357, 1526
Bst6I CTCTTC 5 cut(s) 360, 458, 743, 1713, 1953
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 562
BstBAI YACGTR 2 cut(s) 1172, 1340
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 1278, 1471
BstDEI CTNAG 8 cut(s) 140, 375, 516, 995, 1014, 1272, 1568, 1704
BstDSI CCRYGG 2 cut(s) 569, 1919
BstF5I GGATG 6 cut(s) 607, 618, 924, 1261, 1272, 1312
BstFNI CGCG 1 cut(s) 1921
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 943, 1620
BstMAI GTCTC 2 cut(s) 267, 609
BstMBI GATC 2 cut(s) 940, 1617
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 9 cut(s) 144, 179, 562, 1277, 1400, 1479, 1586, 1639, 1930
BstNI CCWGG 7 cut(s) 300, 934, 1040, 1062, 1122, 1184, 1329
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 9 cut(s) 83, 84, 298, 932, 1038, 1060, 1120, 1182, 1327
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 2 cut(s) 1003, 1824
BstSNI TACGTA 1 cut(s) 1172
BstUI CGCG 1 cut(s) 1921
BstV1I GCAGC 5 cut(s) 1106, 1378, 1564, 1952, 1955
BstV2I GAAGAC 2 cut(s) 60, 345
BstXI CCANNNNNNTGG 1 cut(s) 646
BstZI CGGCCG 1 cut(s) 103
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 7 cut(s) 90, 105, 824, 1012, 1351, 1482, 1918
BtgI CCRYGG 2 cut(s) 569, 1919
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 6 cut(s) 607, 618, 924, 1261, 1272, 1312
BtsI GCAGTG 2 cut(s) 1096, 1104
BtsIMutI CAGTG 7 cut(s) 734, 1001, 1003, 1096, 1104, 1476, 1531
BveI ACCTGC 2 cut(s) 679, 769
Cac8I GCNNGC 2 cut(s) 1278, 1471
CciI TCATGA 1 cut(s) 1614
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 2 cut(s) 1133, 1878
Cfr13I GGNCC 4 cut(s) 88, 1325, 1350, 1876
Cfr42I CCGCGG 1 cut(s) 1922
Cfr9I CCCGGG 1 cut(s) 84
CseI GACGC 2 cut(s) 65, 179
Csp6I GTAC 6 cut(s) 732, 863, 1173, 1191, 1450, 1683
CspAI ACCGGT 1 cut(s) 1133
CspCI CAANNNNNGTGG 8 cut(s) 687, 722, 896, 931, 946, 981, 1407, 1442
CviAII CATG 9 cut(s) 646, 701, 716, 826, 977, 1144, 1581, 1615, 1872
CviQI GTAC 6 cut(s) 732, 863, 1173, 1191, 1450, 1683
DdeI CTNAG 8 cut(s) 140, 375, 516, 995, 1014, 1272, 1568, 1704
DpnI GATC 2 cut(s) 942, 1619
DpnII GATC 2 cut(s) 940, 1617
EaeI YGGCCR 3 cut(s) 103, 1480, 1916
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 5 cut(s) 360, 458, 743, 1713, 1953
EarI CTCTTC 5 cut(s) 360, 458, 743, 1713, 1953
EciI GGCGGA 3 cut(s) 103, 154, 169
Ecl136II GAGCTC 1 cut(s) 1589
EclXI CGGCCG 1 cut(s) 103
Eco105I TACGTA 1 cut(s) 1172
Eco130I CCWWGG 2 cut(s) 1243, 1865
Eco24I GRGCYC 1 cut(s) 1591
Eco32I GATATC 1 cut(s) 1127
Eco47I GGWCC 2 cut(s) 1325, 1876
Eco52I CGGCCG 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 1589
Eco57I CTGAAG 3 cut(s) 1025, 1737, 1821
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 2 cut(s) 84, 843
EcoICRI GAGCTC 1 cut(s) 1589
EcoRII CCWGG 7 cut(s) 298, 932, 1038, 1060, 1120, 1182, 1327
EcoRV GATATC 1 cut(s) 1127
EcoT14I CCWWGG 2 cut(s) 1243, 1865
EcoT38I GRGCYC 1 cut(s) 1591
ErhI CCWWGG 2 cut(s) 1243, 1865
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 9 cut(s) 649, 704, 719, 829, 980, 1147, 1584, 1618, 1875
FaqI GGGAC 4 cut(s) 820, 1103, 1170, 1889
FatI CATG 9 cut(s) 645, 700, 715, 825, 976, 1143, 1580, 1614, 1871
FauNDI CATATG 1 cut(s) 1161
FblI GTMKAC 1 cut(s) 651
FokI GGATG 6 cut(s) 605, 614, 931, 1268, 1279, 1319
FriOI GRGCYC 1 cut(s) 1591
FspBI CTAG 4 cut(s) 222, 384, 1244, 1754
GlaI GCGC 1 cut(s) 137
GsuI CTGGAG 2 cut(s) 1166, 1577
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 7 cut(s) 90, 105, 824, 1012, 1351, 1482, 1918
HapII CCGG 4 cut(s) 85, 209, 1134, 1879
HgaI GACGC 2 cut(s) 65, 179
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 9 cut(s) 649, 704, 719, 829, 980, 1147, 1584, 1618, 1875
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HpaII CCGG 4 cut(s) 85, 209, 1134, 1879
HphI GGTGA 7 cut(s) 118, 290, 347, 374, 461, 731, 737
Hpy166II GTNNAC 4 cut(s) 652, 734, 1001, 1191
Hpy188III TCNNGA 8 cut(s) 272, 1072, 1441, 1594, 1615, 1671, 1952, 1959
Hpy8I GTNNAC 4 cut(s) 652, 734, 1001, 1191
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 6 cut(s) 20, 129, 364, 452, 1057, 1459
HpyCH4III ACNGT 6 cut(s) 246, 278, 685, 1177, 1357, 1526
HpyCH4IV ACGT 4 cut(s) 45, 536, 1171, 1339
HpyF10VI GCNNNNNNNGC 9 cut(s) 144, 179, 562, 1277, 1400, 1479, 1586, 1639, 1930
HpyF3I CTNAG 8 cut(s) 140, 375, 516, 995, 1014, 1272, 1568, 1704
HpySE526I ACGT 4 cut(s) 45, 536, 1171, 1339
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 9 cut(s) 649, 704, 719, 829, 980, 1147, 1584, 1618, 1875
HspAI GCGC 1 cut(s) 136
KspI CCGCGG 1 cut(s) 1922
Kzo9I GATC 2 cut(s) 940, 1617
LguI GCTCTTC 1 cut(s) 1953
LmnI GCTCC 2 cut(s) 1333, 1586
Lsp1109I GCAGC 5 cut(s) 1106, 1378, 1564, 1952, 1955
LweI GCATC 3 cut(s) 909, 1121, 1361
MaeI CTAG 4 cut(s) 222, 384, 1244, 1754
MaeII ACGT 4 cut(s) 45, 536, 1171, 1339
MaeIII GTNAC 4 cut(s) 217, 396, 525, 1756
MalI GATC 2 cut(s) 942, 1619
MboI GATC 2 cut(s) 940, 1617
MhlI GDGCHC 3 cut(s) 1003, 1591, 1824
MlyI GAGTC 3 cut(s) 389, 1730, 1753
MmeI TCCRAC 1 cut(s) 704
MseI TTAA 4 cut(s) 444, 878, 983, 1026
MslI CAYNNNNRTG 2 cut(s) 507, 1006
MspA1I CMGCKG 3 cut(s) 1485, 1921, 1933
MspI CCGG 4 cut(s) 85, 209, 1134, 1879
MspR9I CCNGG 9 cut(s) 85, 86, 300, 934, 1040, 1062, 1122, 1184, 1329
MvaI CCWGG 7 cut(s) 300, 934, 1040, 1062, 1122, 1184, 1329
MvnI CGCG 1 cut(s) 1921
MwoI GCNNNNNNNGC 9 cut(s) 144, 179, 562, 1277, 1400, 1479, 1586, 1639, 1930
NciI CCSGG 2 cut(s) 85, 86
NdeI CATATG 1 cut(s) 1161
NdeII GATC 2 cut(s) 940, 1617
NlaIII CATG 9 cut(s) 649, 704, 719, 829, 980, 1147, 1584, 1618, 1875
NlaIV GGNNCC 6 cut(s) 30, 89, 1045, 1335, 1698, 1877
NmuCI GTSAC 2 cut(s) 396, 1756
NspI RCATGY 1 cut(s) 704
NspV TTCGAA 1 cut(s) 428
OliI CACNNNNGTG 1 cut(s) 1006
PaeR7I CTCGAG 1 cut(s) 843
PagI TCATGA 1 cut(s) 1614
PasI CCCWGGG 1 cut(s) 1039
PciI ACATGT 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 1953
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PfeI GAWTC 8 cut(s) 268, 295, 607, 772, 1564, 1736, 1790, 1955
PfoI TCCNGGA 2 cut(s) 1060, 1182
PinAI ACCGGT 1 cut(s) 1133
PleI GAGTC 3 cut(s) 388, 1729, 1753
PpsI GAGTC 3 cut(s) 388, 1729, 1753
Ppu21I YACGTR 2 cut(s) 1172, 1340
PscI ACATGT 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 1591
Psp6I CCWGG 7 cut(s) 298, 932, 1038, 1060, 1120, 1182, 1327
PspGI CCWGG 7 cut(s) 298, 932, 1038, 1060, 1120, 1182, 1327
PspN4I GGNNCC 6 cut(s) 30, 89, 1045, 1335, 1698, 1877
PspPI GGNCC 4 cut(s) 88, 1325, 1350, 1876
PspXI VCTCGAGB 1 cut(s) 843
PsrI GAACNNNNNNTAC 2 cut(s) 696, 728
PvuII CAGCTG 1 cut(s) 1933
RsaI GTAC 6 cut(s) 733, 864, 1174, 1192, 1451, 1684
RsaNI GTAC 6 cut(s) 732, 863, 1173, 1191, 1450, 1683
RseI CAYNNNNRTG 2 cut(s) 507, 1006
SacI GAGCTC 1 cut(s) 1591
SacII CCGCGG 1 cut(s) 1922
SapI GCTCTTC 1 cut(s) 1953
SaqAI TTAA 4 cut(s) 444, 878, 983, 1026
Sau3AI GATC 2 cut(s) 940, 1617
Sau96I GGNCC 4 cut(s) 88, 1325, 1350, 1876
ScaI AGTACT 1 cut(s) 1451
SchI GAGTC 3 cut(s) 389, 1730, 1753
ScrFI CCNGG 9 cut(s) 85, 86, 300, 934, 1040, 1062, 1122, 1184, 1329
SduI GDGCHC 3 cut(s) 1003, 1591, 1824
SfaNI GCATC 3 cut(s) 909, 1121, 1361
SfcI CTRYAG 1 cut(s) 1377
Sfr274I CTCGAG 1 cut(s) 843
Sfr303I CCGCGG 1 cut(s) 1922
SfuI TTCGAA 1 cut(s) 428
SgrBI CCGCGG 1 cut(s) 1922
SinI GGWCC 2 cut(s) 1325, 1876
SlaI CTCGAG 1 cut(s) 843
SmaI CCCGGG 1 cut(s) 86
SmiMI CAYNNNNRTG 2 cut(s) 507, 1006
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SnaBI TACGTA 1 cut(s) 1172
SpeI ACTAGT 1 cut(s) 1753
SspI AATATT 1 cut(s) 882
SspMI CTAG 4 cut(s) 222, 384, 1244, 1754
SstI GAGCTC 1 cut(s) 1591
StyD4I CCNGG 9 cut(s) 83, 84, 298, 932, 1038, 1060, 1120, 1182, 1327
StyI CCWWGG 2 cut(s) 1243, 1865
TaaI ACNGT 6 cut(s) 246, 278, 685, 1177, 1357, 1526
TaiI ACGT 4 cut(s) 48, 539, 1174, 1342
TaqI TCGA 6 cut(s) 271, 388, 428, 844, 1080, 1519
TaqII GACCGA 1 cut(s) 1313
TatI WGTACW 3 cut(s) 862, 1190, 1449
TauI GCSGC 6 cut(s) 93, 108, 147, 1485, 1921, 1924
TfiI GAWTC 8 cut(s) 268, 295, 607, 772, 1564, 1736, 1790, 1955
Tru1I TTAA 4 cut(s) 444, 878, 983, 1026
Tru9I TTAA 4 cut(s) 444, 878, 983, 1026
TscAI CASTG 7 cut(s) 741, 1003, 1008, 1096, 1104, 1483, 1531
TseFI GTSAC 2 cut(s) 396, 1756
TseI GCWGC 5 cut(s) 1094, 1391, 1577, 1940, 1943
Tsp45I GTSAC 2 cut(s) 396, 1756
TspDTI ATGAA 7 cut(s) 704, 761, 789, 1160, 1178, 1782, 1842
TspGWI ACGGA 1 cut(s) 1610
TspMI CCCGGG 1 cut(s) 84
TspRI CASTG 7 cut(s) 741, 1003, 1008, 1096, 1104, 1483, 1531
VneI GTGCAC 1 cut(s) 999
VpaK11BI GGWCC 2 cut(s) 1325, 1876
XapI RAATTY 2 cut(s) 430, 1076
XceI RCATGY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 1344
XhoI CTCGAG 1 cut(s) 843
XmaI CCCGGG 1 cut(s) 84
XmaJI CCTAGG 1 cut(s) 1243
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 4 cut(s) 222, 384, 1244, 1754
ZrmI AGTACT 1 cut(s) 1451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.