Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010539

Physical Location & Seq

Genomic Coordinates Reverse (-)

5939331 .. 5942182

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTTACTGTTGATCAGCTTCAGGGTGACGATTTCTCGAAACAATGCTCACCTTTCTCCTTGAAAGGTGTTAGAATCCCTCTTTACCATTTTGGTTGCATTTCTGGTTTGGATGATGGTTCCGCTTCTTTAGAAGAAGAGGAAGAGGAACAGAGTTTATTGGATTCGGTTCTTCTAGCACATTGGGAGGATCGGATGTGGAAAGGTTTATTCCGATATGATGTGACAACTTCTGAAATCAAGGTTATTGGTGGAAGGAGAAAGTTTATTGCACAGCTTAATGAAGGCTGGAGTAAGGATTGTATTCCCAAACTAGGCAGGAGTAAAACCGGCCGCGGAGTGTTTGATTTTGGTTGGATGGATAGCCAGGAGGAGTTACTATTTTCTGTTGCAAGAGGTGGACAGTCAAGGCCGGAGCTTGTTCTAGCAACTGATGTCCCTGATTCTGCCTTATTGATTACTGTAAATGCGTCCCCTGTCGAATATGGCCATGTCTTCCTGATACCATATTGCTCGAACATTCTTTACCACTTCCTGGATGCAAAATCCTTGGAATTGGCTCTGTGTGTTGCTGTTGAAGTAAAGAATTACTCTTTTCGCCTGTTCTATGACTATTCACCCAGTGCTTCTCATATATATTTCCAGGCCTGCTATTTTCAAATCCCTTTACCTGTCGAGTTCATGCCTTCTGATACATTCTTCGTTGATGGGCAAAAAGGGACGTGTATATCATCTGTTGCAGACTACCCCATTAAGACCCTTATGTTCGAGAGTAACCACTTTAAGTTGATGTTGGAGGTTGTTGCTGAGATATGCTCTTGTTTGAGGGGAAAGCTCATACTCTATAATCTGCTGATATCTGATCGTGGCAGAAAGATCTTTTTGTTTCTTCAGCTTGGGAATGTGGAGGCTACTTCTTGTTCACATCAAGGTCTGCATTCGATCATGCTACTGAAAAGACTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

36.36

Weight (kDa)

5.42

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	54 - 217	2.9e-46	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	224 - 299	1e-19	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10190 FvH4_3g10190 FvH4_3g10190 FvH4_3g10190
malus_domestica	MD05G1272500.v1.1 MD10G1252600.v1.1
prunus_persica	Prupe.4G090900_v2.0.a1
pyrus_communis	pycom05g25430 pycom10g20830
rosa_chinensis	RchiOBHm_Chr5g0016391
rosa_laevigata	RLG00000032247
rosa_multiflora	Rmu_sc0001235.1_g000033 Rmu_sc0012840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060490
rosa_rugosa	Rorug05G0031900 Rorug05G0031900
rosa_samantha	Rh5AG125600 Rh5BG124600 Rh5CG136900 Rh5DG124300
rosa_wichuraiana	Rw5G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccII	CGCG	1 cut(s)	336
AciI	CCGC	3 cut(s)	123, 334, 336
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	331, 487
AcuI	CTGAAG	2 cut(s)	5, 875
AdeI	CACNNNGTG	1 cut(s)	623
AfiI	CCNNNNNNNGG	2 cut(s)	314, 535
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	64, 578, 659
AjiI	CACGTC	1 cut(s)	723
AjnI	CCWGG	3 cut(s)	366, 534, 642
AluBI	AGCT	5 cut(s)	19, 277, 418, 835, 895
AluI	AGCT	5 cut(s)	19, 277, 418, 835, 895
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	4 cut(s)	331, 410, 487, 645
AsuHPI	GGTGA	3 cut(s)	38, 42, 609
BalI	TGGCCA	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	487
BccI	CCATC	3 cut(s)	110, 352, 701
BciT130I	CCWGG	3 cut(s)	368, 536, 644
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	3 cut(s)	176, 314, 425
BglII	AGATCT	1 cut(s)	876
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	3 cut(s)	368, 536, 644
BmgBI	CACGTC	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	3 cut(s)	368, 536, 644
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	334, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 535
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	368, 536, 644
BseDI	CCNNGG	2 cut(s)	334, 549
BseGI	GGATG	4 cut(s)	118, 201, 363, 544
BseLI	CCNNNNNNNGG	2 cut(s)	314, 535
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	386
BseX3I	CGGCCG	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	4 cut(s)	333, 412, 489, 647
BsiEI	CGRYCG	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	330, 413
BslFI	GGGAC	3 cut(s)	422, 457, 733
BslI	CCNNNNNNNGG	2 cut(s)	314, 535
BsmFI	GGGAC	3 cut(s)	422, 457, 733
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	4 cut(s)	333, 412, 489, 647
Bsp143I	GATC	5 cut(s)	13, 190, 862, 876, 942
BspACI	CCGC	3 cut(s)	123, 334, 336
BspANI	GGCC	4 cut(s)	333, 412, 489, 647
BspCNI	CTCAG	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	334, 549
BssMI	GATC	5 cut(s)	13, 190, 862, 876, 942
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	3 cut(s)	368, 536, 644
Bst4CI	ACNGT	3 cut(s)	10, 405, 463
Bst6I	CTCTTC	2 cut(s)	132, 138
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	1 cut(s)	807
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	118, 201, 363, 544
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	5 cut(s)	16, 193, 865, 879, 945
BstMBI	GATC	5 cut(s)	13, 190, 862, 876, 942
BstMCI	CGRYCG	1 cut(s)	334
BstNI	CCWGG	3 cut(s)	368, 536, 644
BstSCI	CCNGG	3 cut(s)	366, 534, 642
BstUI	CGCG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	876
BstYI	RGATCY	1 cut(s)	876
BstZI	CGGCCG	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	333, 412, 489, 647
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	723
BtsCI	GGATG	4 cut(s)	118, 201, 363, 544
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	329
Cfr42I	CCGCGG	1 cut(s)	337
CseI	GACGC	1 cut(s)	459
CviAII	CATG	3 cut(s)	491, 682, 946
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	5 cut(s)	15, 192, 864, 878, 944
DpnII	GATC	5 cut(s)	13, 190, 862, 876, 942
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	2 cut(s)	331, 487
EagI	CGGCCG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	132, 138
EarI	CTCTTC	2 cut(s)	132, 138
EclXI	CGGCCG	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	647
Eco32I	GATATC	1 cut(s)	858
Eco52I	CGGCCG	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	5, 875
EcoRII	CCWGG	3 cut(s)	366, 534, 642
EcoRV	GATATC	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	494, 685, 949
FaqI	GGGAC	3 cut(s)	422, 457, 733
FatI	CATG	3 cut(s)	490, 681, 945
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	4 cut(s)	125, 208, 370, 551
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	3 cut(s)	176, 314, 425
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	4 cut(s)	333, 412, 489, 647
HapII	CCGG	2 cut(s)	330, 413
HgaI	GACGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	494, 685, 949
HinfI	GANTC	4 cut(s)	75, 164, 443, 960
HpaII	CCGG	2 cut(s)	330, 413
HphI	GGTGA	3 cut(s)	38, 42, 609
Hpy166II	GTNNAC	2 cut(s)	401, 923
Hpy188I	TCNGA	5 cut(s)	195, 215, 235, 691, 862
Hpy188III	TCNNGA	3 cut(s)	37, 499, 769
Hpy8I	GTNNAC	2 cut(s)	401, 923
HpyAV	CCTTC	3 cut(s)	249, 278, 696
HpyCH4III	ACNGT	3 cut(s)	10, 405, 463
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	6 cut(s)	99, 272, 392, 542, 740, 937
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	3 cut(s)	494, 685, 949
Ksp22I	TGATCA	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	13, 190, 862, 876, 942
LmnI	GCTCC	1 cut(s)	415
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	3 cut(s)	176, 314, 425
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	5 cut(s)	4, 26, 223, 375, 773
MalI	GATC	5 cut(s)	15, 192, 864, 878, 944
MboI	GATC	5 cut(s)	13, 190, 862, 876, 942
MboII	GAAGA	7 cut(s)	146, 149, 155, 164, 487, 691, 881
MflI	RGATCY	1 cut(s)	876
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	2 cut(s)	554, 586
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	954
MmeI	TCCRAC	2 cut(s)	335, 774
MnlI	CCTC	9 cut(s)	90, 133, 139, 181, 364, 389, 790, 819, 901
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	3 cut(s)	279, 753, 783
Msp20I	TGGCCA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	2 cut(s)	330, 413
MspR9I	CCNGG	3 cut(s)	368, 536, 644
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	3 cut(s)	368, 536, 644
MvnI	CGCG	1 cut(s)	336
NdeII	GATC	5 cut(s)	13, 190, 862, 876, 942
NlaIII	CATG	3 cut(s)	494, 685, 949
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	26, 223
PceI	AGGCCT	1 cut(s)	647
PctI	GAATGC	1 cut(s)	937
PfeI	GAWTC	3 cut(s)	75, 164, 443
PflMI	CCANNNNNTGG	1 cut(s)	535
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	954
PpsI	GAGTC	1 cut(s)	954
Psp6I	CCWGG	3 cut(s)	366, 534, 642
PspGI	CCWGG	3 cut(s)	366, 534, 642
PspN4I	GGNNCC	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	509, 541
PsuI	RGATCY	1 cut(s)	876
SacII	CCGCGG	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	279, 753, 783
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	5 cut(s)	13, 190, 862, 876, 942
SchI	GAGTC	1 cut(s)	954
ScrFI	CCNGG	3 cut(s)	368, 536, 644
SfaNI	GCATC	1 cut(s)	529
Sfr303I	CCGCGG	1 cut(s)	337
SgrBI	CCGCGG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	554, 586
SseBI	AGGCCT	1 cut(s)	647
SsiI	CCGC	3 cut(s)	123, 334, 336
SspMI	CTAG	3 cut(s)	176, 314, 425
StuI	AGGCCT	1 cut(s)	647
StyD4I	CCNGG	3 cut(s)	366, 534, 642
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	10, 405, 463
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	6 cut(s)	38, 480, 515, 675, 768, 941
TasI	AATT	2 cut(s)	554, 586
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	75, 164, 443
Tru1I	TTAA	3 cut(s)	279, 753, 783
Tru9I	TTAA	3 cut(s)	279, 753, 783
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	26, 223
Tsp45I	GTSAC	2 cut(s)	26, 223
TspDTI	ATGAA	2 cut(s)	297, 670
TspRI	CASTG	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	535
XspI	CTAG	3 cut(s)	176, 314, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.