Prupe.4G090900_v2.0.a1

GDP-L-galactose phosphorylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010539
Physical Location & Seq
Reverse (-)
4533548 .. 4536051
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G090900.1

Sequence Viewer

Length: 1119 bp
ATGGTTACAGTGGAGCAGCTTCAAGACGACAGCTTTTTGTCTCAGTGCCCTCCTCCACTGTCGTTGCAAGGAATTTTCTCAGGTATAAGAATCCCTTTATACCGCTTTGGTAGCAATTCTGTATTGGATAAAGGTTCTGTTGGAGGCATTTCATGCTTAATTGAAGAAGAACAGAGTGTGCTAGATTCTATTCTTCTAGCGCAGTGGGAAGATCGAATGTGGAAAGGTCTATTCAGATATGATGTGACAACCTCTGAAATTAAGGTCATTGGTGGCAGGAGAAAGTTTATTGCTCAGTTTAATGAAGGATGGAGTAGGGATTGTATGCCAAAGCTGGGAAAGAACAAAATCCCCCACCAAAAAGATGTGTTTGAGTTTAGTTGGATGGAACGCCAGGAGGAGTTACTCTTTTGTGTTGCAAGTGGTGAAAAGTTAAACCCTGAGCTCGTTCTTTCAGCTGCCGTGCCTGATTGTGGCTTATTGATTACTATCAACTCATCCCCTGTGGAATATGGCCATGTCTTCCTGGTACCACATAGCTCTTACATTCTTCACCAGTTCCTAGATGCAAGATCCTTGGAACTAGTTCTGCATGTTGCTGTTGAAGTAAATAATTCCTCTTTTCGCCAATTCTATGACTATTCACCTAGTGCTTCTCATATATATTTCCAGGCCTGCTACCTTCAAATCCCTTTACCTGTTGAATTCATGCCTTTGGATACTTTTTTTGGCGATGGGCAAGAGGGGATGCGTATCTCTTCTGTTACAGATTACCCCATTAAGACTCTAGTTTTTGAGAGCAACCATTTGAATATGATGATGGAGGTTCTTGCTGAGATATGTTCGTGTTTACAGGAAAAGCTCATTCCATATAATCTGCTGATATCTGATCGTGGCAAAAGAATATTTTTATTTTTTCAGCTACAGACATCAAAAAACTTTTGTACCCTTTCAGCTTGGGAATGTGGGGGGTACTTCGTGGTTAAGTCAAGGTCTGAATTTGATCAAGCTACTGAGCAGGCTCTGCTAAAACAGCTAACTACCGTCTCCCTTGATGATGAAGGTTTCCAAGGGGTGAAGCGGCTCTGTTGCACCATTGCCGGCAAGTTCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 ko01110 map00053 map01100 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

42.19

Weight (kDa)

5.13

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 529
AciI CCGC 2 cut(s) 103, 1081
AclWI GGATC 1 cut(s) 567
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 3 cut(s) 72, 704, 998
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 3 cut(s) 531, 946, 974
AfiI CCNNNNNNNGG 2 cut(s) 335, 473
AgsI TTSAA 6 cut(s) 23, 164, 605, 686, 704, 811
AhlI ACTAGT 1 cut(s) 583
AjnI CCWGG 3 cut(s) 393, 525, 669
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 45, 1051
AlwI GGATC 1 cut(s) 567
AlwNI CAGNNNCTG 1 cut(s) 1024
AoxI GGCC 2 cut(s) 514, 672
ApeKI GCWGC 2 cut(s) 16, 458
ApoI RAATTY 3 cut(s) 72, 704, 998
Asp700I GAANNNNTTC 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 529
AspLEI GCGC 1 cut(s) 202
AsuHPI GGTGA 4 cut(s) 437, 545, 636, 1087
BaeGI GKGCMC 1 cut(s) 50
BaeI ACNNNNGTAYC 2 cut(s) 928, 961
BalI TGGCCA 1 cut(s) 516
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 28, 445
BccI CCATC 4 cut(s) 303, 379, 728, 814
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 3 cut(s) 395, 527, 671
BciVI GTATCC 1 cut(s) 712
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 2 cut(s) 45, 1051
BcuI ACTAGT 1 cut(s) 583
BfaI CTAG 6 cut(s) 182, 197, 563, 584, 648, 788
BfmI CTRYAG 1 cut(s) 923
BfuI GTATCC 1 cut(s) 712
BisI GCNGC 3 cut(s) 17, 459, 1082
BlsI GCNGC 3 cut(s) 18, 460, 1083
Bme1390I CCNGG 3 cut(s) 395, 527, 671
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 3 cut(s) 395, 527, 671
BmsI GCATC 2 cut(s) 556, 738
BpiI GAAGAC 1 cut(s) 514
Bpu10I CCTNAGC 1 cut(s) 441
BsaBI GATNNNNATC 2 cut(s) 488, 752
BsaJI CCNNGG 2 cut(s) 576, 1069
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 473
Bse118I RCCGGY 1 cut(s) 1100
Bse1I ACTGG 1 cut(s) 556
Bse3DI GCAATG 1 cut(s) 1095
Bse8I GATNNNNATC 2 cut(s) 488, 752
BseBI CCWGG 3 cut(s) 395, 527, 671
BseDI CCNNGG 2 cut(s) 576, 1069
BseGI GGATG 4 cut(s) 314, 390, 497, 753
BseJI GATNNNNATC 2 cut(s) 488, 752
BseLI CCNNNNNNNGG 2 cut(s) 335, 473
BseMI GCAATG 1 cut(s) 1095
BseMII CTCAG 6 cut(s) 56, 93, 308, 432, 825, 1005
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 2 cut(s) 42, 413
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 2 cut(s) 28, 445
BseYI CCCAGC 1 cut(s) 334
BshFI GGCC 2 cut(s) 516, 674
BshNI GGYRCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 1101
BslI CCNNNNNNNGG 2 cut(s) 335, 473
BsmAI GTCTC 2 cut(s) 45, 1051
BsmBI CGTCTC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 516, 674
Bsp1286I GDGCHC 2 cut(s) 50, 447
Bsp143I GATC 4 cut(s) 211, 572, 889, 1003
BspACI CCGC 2 cut(s) 103, 1081
BspANI GGCC 2 cut(s) 516, 674
BspCNI CTCAG 6 cut(s) 55, 92, 307, 433, 826, 1006
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 1095
BsrFI RCCGGY 1 cut(s) 1100
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 1100
BssECI CCNNGG 2 cut(s) 576, 1069
BssMI GATC 4 cut(s) 211, 572, 889, 1003
BssT1I CCWWGG 2 cut(s) 576, 1069
Bst2UI CCWGG 3 cut(s) 395, 527, 671
Bst4CI ACNGT 3 cut(s) 10, 60, 1045
Bst6I CTCTTC 1 cut(s) 763
BstAPI GCANNNNNTGC 2 cut(s) 153, 1024
BstC8I GCNNGC 3 cut(s) 676, 1020, 1102
BstDEI CTNAG 6 cut(s) 42, 79, 294, 441, 834, 1014
BstF5I GGATG 4 cut(s) 314, 390, 497, 753
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 4 cut(s) 214, 575, 892, 1006
BstMAI GTCTC 2 cut(s) 45, 1051
BstMBI GATC 4 cut(s) 211, 572, 889, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 111, 153, 1024, 1033
BstNI CCWGG 3 cut(s) 395, 527, 671
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 393, 525, 669
BstSFI CTRYAG 1 cut(s) 923
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 28, 445
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 2 cut(s) 516, 674
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 4 cut(s) 314, 390, 497, 753
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 4 cut(s) 15, 50, 56, 209
Cac8I GCNNGC 3 cut(s) 676, 1020, 1102
CaiI CAGNNNCTG 1 cut(s) 1024
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 1100
Csp6I GTAC 3 cut(s) 530, 945, 973
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 4 cut(s) 153, 518, 593, 709
CviQI GTAC 3 cut(s) 530, 945, 973
DdeI CTNAG 6 cut(s) 42, 79, 294, 441, 834, 1014
DpnI GATC 4 cut(s) 213, 574, 891, 1005
DpnII GATC 4 cut(s) 211, 572, 889, 1003
DraIII CACNNNGTG 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 576, 1069
Eco147I AGGCCT 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 3 cut(s) 393, 525, 669
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 2 cut(s) 576, 1069
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 576, 1069
Esp3I CGTCTC 1 cut(s) 1051
FaeI CATG 4 cut(s) 156, 521, 596, 712
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 4 cut(s) 152, 517, 592, 708
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 3 cut(s) 17, 459, 1082
FokI GGATG 4 cut(s) 321, 397, 484, 760
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 3 cut(s) 17, 459, 1082
FspBI CTAG 6 cut(s) 182, 197, 563, 584, 648, 788
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 17, 459, 1082
GsaI CCCAGC 1 cut(s) 338
HaeIII GGCC 2 cut(s) 516, 674
HapII CCGG 1 cut(s) 1101
HhaI GCGC 1 cut(s) 202
Hin1II CATG 4 cut(s) 156, 521, 596, 712
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 3 cut(s) 90, 185, 784
HpaII CCGG 1 cut(s) 1101
HphI GGTGA 4 cut(s) 437, 545, 636, 1087
Hpy166II GTNNAC 2 cut(s) 851, 1110
Hpy188I TCNGA 4 cut(s) 236, 256, 889, 997
Hpy188III TCNNGA 2 cut(s) 23, 1116
Hpy8I GTNNAC 2 cut(s) 851, 1110
HpyAV CCTTC 3 cut(s) 299, 692, 1055
HpyCH4III ACNGT 3 cut(s) 10, 60, 1045
HpyCH4V TGCA 5 cut(s) 67, 419, 569, 592, 1092
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 153, 1024, 1033
HpyF3I CTNAG 6 cut(s) 42, 79, 294, 441, 834, 1014
Hsp92II CATG 4 cut(s) 156, 521, 596, 712
HspAI GCGC 1 cut(s) 200
KpnI GGTACC 1 cut(s) 533
KroI GCCGGC 1 cut(s) 1100
KroNI GCCGGC 1 cut(s) 1102
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 4 cut(s) 211, 572, 889, 1003
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 2 cut(s) 28, 445
LweI GCATC 2 cut(s) 556, 738
MaeI CTAG 6 cut(s) 182, 197, 563, 584, 648, 788
MaeIII GTNAC 4 cut(s) 4, 244, 402, 763
MalI GATC 4 cut(s) 213, 574, 891, 1005
MboI GATC 4 cut(s) 211, 572, 889, 1003
MboII GAAGA 7 cut(s) 176, 179, 185, 221, 514, 542, 750
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 50, 447
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 8 cut(s) 72, 115, 159, 258, 613, 629, 704, 998
MluNI TGGCCA 1 cut(s) 516
MlyI GAGTC 1 cut(s) 778
MmeI TCCRAC 2 cut(s) 121, 362
MnlI CCTC 8 cut(s) 60, 63, 137, 262, 391, 628, 736, 817
Mox20I TGGCCA 1 cut(s) 516
MroNI GCCGGC 1 cut(s) 1100
MroXI GAANNNNTTC 1 cut(s) 585
MscI TGGCCA 1 cut(s) 516
MseI TTAA 6 cut(s) 158, 261, 300, 434, 780, 984
Msp20I TGGCCA 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 1101
MspR9I CCNGG 3 cut(s) 395, 527, 671
MvaI CCWGG 3 cut(s) 395, 527, 671
MwoI GCNNNNNNNGC 4 cut(s) 111, 153, 1024, 1033
NaeI GCCGGC 1 cut(s) 1102
NdeII GATC 4 cut(s) 211, 572, 889, 1003
NgoMIV GCCGGC 1 cut(s) 1100
NlaIII CATG 4 cut(s) 156, 521, 596, 712
NlaIV GGNNCC 1 cut(s) 531
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 596
PceI AGGCCT 1 cut(s) 674
PdiI GCCGGC 1 cut(s) 1102
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 90, 185
PkrI GCNGC 3 cut(s) 18, 460, 1083
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 3 cut(s) 393, 525, 669
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 3 cut(s) 393, 525, 669
PspN4I GGNNCC 1 cut(s) 531
PstNI CAGNNNCTG 1 cut(s) 1024
PsuI RGATCY 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 3 cut(s) 531, 946, 974
RsaNI GTAC 3 cut(s) 530, 945, 973
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 6 cut(s) 158, 261, 300, 434, 780, 984
SatI GCNGC 3 cut(s) 17, 459, 1082
Sau3AI GATC 4 cut(s) 211, 572, 889, 1003
SchI GAGTC 1 cut(s) 778
ScrFI CCNGG 3 cut(s) 395, 527, 671
SduI GDGCHC 2 cut(s) 50, 447
SfaNI GCATC 2 cut(s) 556, 738
SfcI CTRYAG 1 cut(s) 923
SpeI ACTAGT 1 cut(s) 583
Sse9I AATT 8 cut(s) 72, 115, 159, 258, 613, 629, 704, 998
SseBI AGGCCT 1 cut(s) 674
SsiI CCGC 2 cut(s) 103, 1081
SspI AATATT 1 cut(s) 906
SspMI CTAG 6 cut(s) 182, 197, 563, 584, 648, 788
SstI GAGCTC 1 cut(s) 447
StuI AGGCCT 1 cut(s) 674
StyD4I CCNGG 3 cut(s) 393, 525, 669
StyI CCWWGG 2 cut(s) 576, 1069
TaaI ACNGT 3 cut(s) 10, 60, 1045
TaqI TCGA 1 cut(s) 214
TasI AATT 8 cut(s) 72, 115, 159, 258, 613, 629, 704, 998
TauI GCSGC 1 cut(s) 1084
TfiI GAWTC 2 cut(s) 90, 185
Tru1I TTAA 6 cut(s) 158, 261, 300, 434, 780, 984
Tru9I TTAA 6 cut(s) 158, 261, 300, 434, 780, 984
TscAI CASTG 4 cut(s) 15, 50, 63, 209
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 16, 458
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 141, 318, 697, 1074
TspRI CASTG 4 cut(s) 15, 50, 63, 209
XapI RAATTY 3 cut(s) 72, 704, 998
XceI RCATGY 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 6 cut(s) 182, 197, 563, 584, 648, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.