Rh5DG124300

GDP-L-galactose phosphorylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010539
Physical Location & Seq
Reverse (-)
11289421 .. 11292168
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG124300.1

Sequence Viewer

Length: 1104 bp
ATGGTTACCGTCGATCAGCTTCAGGGTGATAATTTCTCGTCGCAATGCGGACCTTTGTCTTTGAAAGGTGTTAGAATCCCTCTTTACCGATTTGGTTGCAATTCTGTTTTGGATGATGGTTCTGTTGGAGGGAATGCTTGTTTTTCAGAAGAGGAAGAAGAACAGAGTTTATTGGATTCGATTCTTCTTGCCCAGTGGGAGGATCGGATGTGGAAAGGTTTATTCAGATATGATGTGACAACCTCTGAAATTAAGGTTGTTGGTGGAAGGAGAAAGTTTATTGCACAGTTTAACGAAGGATGGGGTACGGATTGTATACCCAAACTGGGCAAGGGTAAAATCAGCCAAGGATTGTTTGAGTTTAGCTGGATGGATCGCCAGGAGGAGTTACTATTTTCTGTTGCAAGGGGTGAACAGTCAAACCCGGAGCTTGTTCTTGCGGCTGATGTCCCTGATTCTGCCTTATTGATTACTGTAAATGCATCCCCTGTTGAATATGGCCATGTCTTCCTGATACCATATTGCTCGAACATTCTTTACCAGTTCCTGGATGCAAAATCCTTGGAATTGGCTCTATGCGTTGCTGTTGAAGTAAAGAACTACTCTTTTCGCCTGTTCTATGACTATTCACCCAGTGCTTCTCATATATATTTCCAGGCTTGCTATTTTCAAATCCCTTTACCTGTCGAGTTTATGCCTTCTGATACATTCTTCATTGATGGCCAAAAGGGGATGCTTATTTCTTCTGTTGCAGACTACCCCATTAAGACCCTTGTGTTTGAGAGCAACCACTTTAAGTTGATGTTGGAGGTTGTTGCTGAGATATGCTCTTCTTTACGGGGAAAGCTCATATTGTATAATCTGCTGATATCTGATCATGGCAGAAAGATCTTTTTGTTTCTTCAGCAACAGACTTCAAAAACCTCTTGCACCCTTTCAGCTTGGGAATGTGGGGGCTACTTCTTGTTTAAATCAAGGTCTGCATTCGATCAATCTACTGAGAAGAATTTGCTAAAACAGCTAAGTACTGTCTCCATTGATGAGGAGGGTTTCCAAGCAGTTAAGCTGCTGTGTAGCAACATTGCGAGCAAGTTTACTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 ko01110 map00053 map01100 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

41.26

Weight (kDa)

4.99

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 58 - 221 2.6e-48 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 228 - 364 2.9e-40 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 1 cut(s) 316
AciI CCGC 2 cut(s) 48, 440
AclWI GGATC 2 cut(s) 210, 381
AcoI YGGCCR 2 cut(s) 499, 721
AcsI RAATTY 1 cut(s) 1006
AcuI CTGAAG 2 cut(s) 5, 887
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 2 cut(s) 307, 1027
AfiI CCNNNNNNNGG 3 cut(s) 199, 326, 547
AgsI TTSAA 5 cut(s) 64, 494, 590, 671, 918
AjnI CCWGG 3 cut(s) 378, 546, 654
AluBI AGCT 7 cut(s) 19, 366, 430, 847, 941, 1021, 1066
AluI AGCT 7 cut(s) 19, 366, 430, 847, 941, 1021, 1066
Alw26I GTCTC 1 cut(s) 1036
AlwI GGATC 2 cut(s) 210, 381
AlwNI CAGNNNCTG 1 cut(s) 547
AoxI GGCC 2 cut(s) 499, 721
ApeKI GCWGC 1 cut(s) 1066
ApoI RAATTY 1 cut(s) 1006
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 38, 422, 621
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 2 cut(s) 501, 723
BbsI GAAGAC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 1053
BccI CCATC 4 cut(s) 110, 294, 364, 713
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 3 cut(s) 380, 548, 656
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 1036
BglII AGATCT 1 cut(s) 888
BisI GCNGC 2 cut(s) 441, 1067
BlsI GCNGC 2 cut(s) 442, 1068
BmcAI AGTACT 1 cut(s) 1027
Bme1390I CCNGG 4 cut(s) 380, 425, 548, 656
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 4 cut(s) 380, 425, 548, 656
BmrI ACTGGG 3 cut(s) 187, 335, 627
BmsI GCATC 3 cut(s) 491, 541, 723
BmuI ACTGGG 3 cut(s) 187, 335, 627
BoxI GACNNNNGTC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 499
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpuMI CCSGG 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 346, 561
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 326, 547
Bse1I ACTGG 4 cut(s) 193, 330, 541, 633
Bse3DI GCAATG 2 cut(s) 50, 1080
BseBI CCWGG 3 cut(s) 380, 548, 656
BseDI CCNNGG 2 cut(s) 346, 561
BseGI GGATG 7 cut(s) 118, 213, 305, 375, 482, 556, 738
BseLI CCNNNNNNNGG 3 cut(s) 199, 326, 547
BseMI GCAATG 2 cut(s) 50, 1080
BseMII CTCAG 2 cut(s) 810, 990
BseNI ACTGG 4 cut(s) 193, 330, 541, 633
BseRI GAGGAG 2 cut(s) 398, 1058
BseXI GCAGC 1 cut(s) 1053
BshFI GGCC 2 cut(s) 501, 723
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 199, 326, 547
BsmAI GTCTC 1 cut(s) 1036
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 2 cut(s) 139, 983
BsnI GGCC 2 cut(s) 501, 723
Bsp143I GATC 6 cut(s) 13, 202, 373, 874, 888, 988
BspACI CCGC 2 cut(s) 48, 440
BspANI GGCC 2 cut(s) 501, 723
BspCNI CTCAG 2 cut(s) 811, 991
BspPI GGATC 2 cut(s) 210, 381
BspQI GCTCTTC 1 cut(s) 835
BsrDI GCAATG 2 cut(s) 50, 1080
BsrI ACTGG 4 cut(s) 193, 330, 541, 633
BssECI CCNNGG 2 cut(s) 346, 561
BssMI GATC 6 cut(s) 13, 202, 373, 874, 888, 988
BssNAI GTATAC 1 cut(s) 317
BssT1I CCWWGG 2 cut(s) 346, 561
Bst1107I GTATAC 1 cut(s) 317
Bst2UI CCWGG 3 cut(s) 380, 548, 656
Bst4CI ACNGT 5 cut(s) 10, 288, 417, 475, 1030
Bst6I CTCTTC 2 cut(s) 144, 835
BstC8I GCNNGC 2 cut(s) 661, 1087
BstDEI CTNAG 3 cut(s) 819, 999, 1022
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 7 cut(s) 118, 213, 305, 375, 482, 556, 738
BstKTI GATC 6 cut(s) 16, 205, 376, 877, 891, 991
BstMAI GTCTC 1 cut(s) 1036
BstMBI GATC 6 cut(s) 13, 202, 373, 874, 888, 988
BstMWI GCNNNNNNNGC 1 cut(s) 1018
BstNI CCWGG 3 cut(s) 380, 548, 656
BstPAI GACNNNNGTC 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 4 cut(s) 378, 423, 546, 654
BstV1I GCAGC 1 cut(s) 1053
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 888
BstYI RGATCY 1 cut(s) 888
BstZ17I GTATAC 1 cut(s) 317
BsuRI GGCC 2 cut(s) 501, 723
BtsCI GGATG 7 cut(s) 118, 213, 305, 375, 482, 556, 738
BtsIMutI CAGTG 2 cut(s) 200, 640
Cac8I GCNNGC 2 cut(s) 661, 1087
CaiI CAGNNNCTG 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 306, 1026
CviAII CATG 2 cut(s) 503, 878
CviQI GTAC 2 cut(s) 306, 1026
DdeI CTNAG 3 cut(s) 819, 999, 1022
DpnI GATC 6 cut(s) 15, 204, 375, 876, 890, 990
DpnII GATC 6 cut(s) 13, 202, 373, 874, 888, 988
DraI TTTAAA 1 cut(s) 970
DraIII CACNNNGTG 1 cut(s) 635
EaeI YGGCCR 2 cut(s) 499, 721
Eam1104I CTCTTC 2 cut(s) 144, 835
EarI CTCTTC 2 cut(s) 144, 835
Eco130I CCWWGG 2 cut(s) 346, 561
Eco32I GATATC 1 cut(s) 870
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 5, 887
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 378, 546, 654
EcoRV GATATC 1 cut(s) 870
EcoT14I CCWWGG 2 cut(s) 346, 561
EcoT22I ATGCAT 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 346, 561
FaeI CATG 2 cut(s) 506, 881
FaqI GGGAC 1 cut(s) 434
FatI CATG 2 cut(s) 502, 877
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 441, 1067
FokI GGATG 7 cut(s) 125, 220, 312, 382, 469, 563, 745
Fsp4HI GCNGC 2 cut(s) 441, 1067
GluI GCNGC 2 cut(s) 441, 1067
HaeIII GGCC 2 cut(s) 501, 723
HapII CCGG 1 cut(s) 425
Hin1II CATG 2 cut(s) 506, 881
HinfI GANTC 4 cut(s) 75, 176, 181, 455
HpaII CCGG 1 cut(s) 425
HphI GGTGA 3 cut(s) 38, 422, 621
Hpy166II GTNNAC 3 cut(s) 317, 413, 1095
Hpy188I TCNGA 6 cut(s) 148, 207, 227, 247, 703, 874
Hpy188III TCNNGA 2 cut(s) 511, 1101
Hpy8I GTNNAC 3 cut(s) 317, 413, 1095
Hpy99I CGWCG 2 cut(s) 14, 43
HpyAV CCTTC 3 cut(s) 261, 290, 708
HpyCH4III ACNGT 5 cut(s) 10, 288, 417, 475, 1030
HpyCH4V TGCA 8 cut(s) 99, 284, 404, 482, 554, 752, 930, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 1018
HpyF3I CTNAG 3 cut(s) 819, 999, 1022
Hsp92II CATG 2 cut(s) 506, 881
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 6 cut(s) 13, 202, 373, 874, 888, 988
LguI GCTCTTC 1 cut(s) 835
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 1 cut(s) 1053
LweI GCATC 3 cut(s) 491, 541, 723
MaeIII GTNAC 3 cut(s) 4, 235, 387
MalI GATC 6 cut(s) 15, 204, 375, 876, 890, 990
MboI GATC 6 cut(s) 13, 202, 373, 874, 888, 988
MflI RGATCY 1 cut(s) 888
MlsI TGGCCA 2 cut(s) 501, 723
MluCI AATT 5 cut(s) 31, 100, 249, 566, 1006
MluNI TGGCCA 2 cut(s) 501, 723
MmeI TCCRAC 2 cut(s) 106, 786
Mox20I TGGCCA 2 cut(s) 501, 723
Mph1103I ATGCAT 1 cut(s) 484
MscI TGGCCA 2 cut(s) 501, 723
MseI TTAA 6 cut(s) 252, 291, 765, 795, 969, 1062
Msp20I TGGCCA 2 cut(s) 501, 723
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 4 cut(s) 380, 425, 548, 656
Mva1269I GAATGC 2 cut(s) 139, 983
MvaI CCWGG 3 cut(s) 380, 548, 656
MwoI GCNNNNNNNGC 1 cut(s) 1018
NciI CCSGG 1 cut(s) 425
NdeII GATC 6 cut(s) 13, 202, 373, 874, 888, 988
NlaIII CATG 2 cut(s) 506, 881
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 835
PctI GAATGC 2 cut(s) 139, 983
PfeI GAWTC 4 cut(s) 75, 176, 181, 455
PflMI CCANNNNNTGG 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 2 cut(s) 442, 1068
PshAI GACNNNNGTC 1 cut(s) 55
Psp6I CCWGG 3 cut(s) 378, 546, 654
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 378, 546, 654
PspPI GGNCC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 888
RsaI GTAC 2 cut(s) 307, 1027
RsaNI GTAC 2 cut(s) 306, 1026
SapI GCTCTTC 1 cut(s) 835
SaqAI TTAA 6 cut(s) 252, 291, 765, 795, 969, 1062
SatI GCNGC 2 cut(s) 441, 1067
Sau3AI GATC 6 cut(s) 13, 202, 373, 874, 888, 988
Sau96I GGNCC 1 cut(s) 50
ScaI AGTACT 1 cut(s) 1027
ScrFI CCNGG 4 cut(s) 380, 425, 548, 656
SfaNI GCATC 3 cut(s) 491, 541, 723
SinI GGWCC 1 cut(s) 50
Sse9I AATT 5 cut(s) 31, 100, 249, 566, 1006
SsiI CCGC 2 cut(s) 48, 440
StyD4I CCNGG 4 cut(s) 378, 423, 546, 654
StyI CCWWGG 2 cut(s) 346, 561
TaaI ACNGT 5 cut(s) 10, 288, 417, 475, 1030
TaqI TCGA 5 cut(s) 12, 179, 527, 687, 987
TasI AATT 5 cut(s) 31, 100, 249, 566, 1006
TatI WGTACW 1 cut(s) 1025
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 4 cut(s) 75, 176, 181, 455
Tru1I TTAA 6 cut(s) 252, 291, 765, 795, 969, 1062
Tru9I TTAA 6 cut(s) 252, 291, 765, 795, 969, 1062
TscAI CASTG 2 cut(s) 200, 640
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 1066
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 703
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 2 cut(s) 200, 640
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 1006
XmiI GTMKAC 1 cut(s) 316
ZrmI AGTACT 1 cut(s) 1027
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.