Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010539

Physical Location & Seq

Genomic Coordinates Forward (+)

34545738 .. 34548588

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1252600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTTACGGTTAAGCAGCTTCAAGATGGTAACTTTACGTCGCAATTCCCTCCATTTTCTCTGCAAGGTATAAAAATCCCCTTGTACCGTTTTAGTAGCAATTCGATACTGGATAATGGTTGTGTTGGAGGCATTTCGTGTGTGCACGAAGAAGAAGGAGGAGAAGAAGGAGAAGAACAGAGTGTATTGGATTCTATTCTTCTTGCGCAGTGGGAAGATCGAATGTGGAAAGGTCTGTTCAGATACGATGTGACAACATCTGAAATCAAGGTCATCGGTGGCAGGAAGAAGTTCATTGCTCAGTTTAACGAAGGATGGAGTAGGGATTTTATTCCAAGGATGGGCAAGAACAAGAAATTCCTCCAAGAAGATGCGTTCAAGTTTAGTTGGATGGAACTGCAGGAGGAGTTACTCTTTTGTGTTTCAAGTGGTGAAAAGTCGAACCCTGAGCTTGTTCTTTCAGCTGCTGTGCCTGACTGTGCCTTGTTGATTGCTATCAATGCATCCCCCGTGGAATATGGTCATGTCTTGTTGGTACCACATGGCTCTAAAATTATTCACCAGTACCTCGATAAAAGGTCATTGGAACTTGTCCTGCGCATTGCTGTTGAAATAAATAATTGCTCTTTTCGCCTATTCTATGACTATTCACCTAGCGCTTCTCCTTTATATTTCCAGGCTTGCTACCTTCAAATCCCTTTGCCTGTTGAGTTCATGCATTTCGATACAATATTTGGCGCTGGGAAAGAGGGGGTGCGCATCTCTTGTGTTGCAGAGTACCCCATTAAGACCCTCGTATTGGAGAGCAACCACTTTAATACGATGATGGAGGTTCTTGCTGAGATATGTTCGTGTTTACAACAAAAGCTCATTCCATACAATCTGCTAATATCTGATCATGGCAAAAGGATATTCTTATTTTTCCAGCTACATACATCAAAAGACTCTTGTACCCTTTCTGCTTGGGAGTGTGGGGGGTACTTCTTGTTTAAATCTAAGTCTGAATTTGATCAAGCTACTGAGCAGGCTCTGCTAAAACAGCTAAGTACCGTCTCCCTTGACGACAAAGGTTTCCAAGCAGTGAAGTTGCTCTGTTGCAGCATTGCGGGCAAGTTTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

42.25

Weight (kDa)

5.48

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	63 - 228	1.3e-52	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	235 - 371	2.1e-44	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10190 FvH4_3g10190 FvH4_3g10190 FvH4_3g10190
malus_domestica	MD05G1272500.v1.1 MD10G1252600.v1.1
prunus_persica	Prupe.4G090900_v2.0.a1
pyrus_communis	pycom05g25430 pycom10g20830
rosa_chinensis	RchiOBHm_Chr5g0016391
rosa_laevigata	RLG00000032247
rosa_multiflora	Rmu_sc0001235.1_g000033 Rmu_sc0012840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060490
rosa_rugosa	Rorug05G0031900 Rorug05G0031900
rosa_samantha	Rh5AG125600 Rh5BG124600 Rh5CG136900 Rh5DG124300
rosa_wichuraiana	Rw5G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	207, 599, 758
Acc65I	GGTACC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	535
AciI	CCGC	1 cut(s)	1106
AcsI	RAATTY	2 cut(s)	356, 1004
AfaI	GTAC	7 cut(s)	86, 537, 566, 779, 952, 980, 1048
AfeI	AGCGCT	1 cut(s)	658
AfiI	CCNNNNNNNGG	2 cut(s)	341, 799
AgsI	TTSAA	5 cut(s)	23, 379, 426, 611, 692
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	7 cut(s)	19, 451, 464, 868, 928, 1016, 1042
AluI	AGCT	7 cut(s)	19, 451, 464, 868, 928, 1016, 1042
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	1057
Alw44I	GTGCAC	1 cut(s)	143
AlwNI	CAGNNNCTG	2 cut(s)	467, 1030
Aor51HI	AGCGCT	1 cut(s)	658
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	16, 464, 1098
ApoI	RAATTY	2 cut(s)	356, 1004
Asp700I	GAANNNNTTC	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	535
AspLEI	GCGC	5 cut(s)	208, 600, 659, 740, 759
AsuHPI	GGTGA	3 cut(s)	443, 551, 642
BaeGI	GKGCMC	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	934, 967
BanI	GGYRCC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	28, 451, 1110
BccI	CCATC	5 cut(s)	20, 309, 334, 385, 820
BciT130I	CCWGG	1 cut(s)	677
BclI	TGATCA	2 cut(s)	895, 1009
BcoDI	GTCTC	1 cut(s)	1057
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	398
BfoI	RGCGCY	2 cut(s)	660, 741
BisI	GCNGC	3 cut(s)	17, 465, 1099
BlsI	GCNGC	3 cut(s)	18, 466, 1100
Bme1390I	CCNGG	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	677
BmsI	GCATC	3 cut(s)	361, 512, 768
Bpu10I	CCTNAGC	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	335, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 799
Bse1I	ACTGG	2 cut(s)	114, 562
Bse3DI	GCAATG	3 cut(s)	294, 600, 1101
Bse8I	GATNNNNATC	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	2 cut(s)	335, 510
BseGI	GGATG	4 cut(s)	320, 345, 396, 503
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	341, 799
BseMI	GCAATG	3 cut(s)	294, 600, 1101
BseMII	CTCAG	4 cut(s)	314, 438, 831, 1011
BseNI	ACTGG	2 cut(s)	114, 562
BseRI	GAGGAG	2 cut(s)	174, 419
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	28, 451, 1110
BseYI	CCCAGC	1 cut(s)	740
BshNI	GGYRCC	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	341, 799
BsmAI	GTCTC	1 cut(s)	1057
BsmBI	CGTCTC	1 cut(s)	1057
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	217, 895, 1009
BspACI	CCGC	1 cut(s)	1106
BspCNI	CTCAG	4 cut(s)	313, 439, 832, 1012
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	535
BsrDI	GCAATG	3 cut(s)	294, 600, 1101
BsrI	ACTGG	2 cut(s)	114, 562
BssECI	CCNNGG	2 cut(s)	335, 510
BssMI	GATC	3 cut(s)	217, 895, 1009
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	4 cut(s)	10, 89, 479, 1051
BstAPI	GCANNNNNTGC	1 cut(s)	1030
BstC8I	GCNNGC	3 cut(s)	682, 1026, 1108
BstDEI	CTNAG	6 cut(s)	300, 447, 840, 996, 1020, 1043
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	320, 345, 396, 503
BstH2I	RGCGCY	2 cut(s)	660, 741
BstHHI	GCGC	5 cut(s)	208, 600, 659, 740, 759
BstKTI	GATC	3 cut(s)	220, 898, 1012
BstMAI	GTCTC	1 cut(s)	1057
BstMBI	GATC	3 cut(s)	217, 895, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	500, 630, 1030, 1039, 1107
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	398
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	28, 451, 1110
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	320, 345, 396, 503
BtsI	GCAGTG	2 cut(s)	215, 1086
BtsIMutI	CAGTG	2 cut(s)	215, 1086
Cac8I	GCNNGC	3 cut(s)	682, 1026, 1108
CaiI	CAGNNNCTG	2 cut(s)	467, 1030
CfoI	GCGC	5 cut(s)	208, 600, 659, 740, 759
Csp6I	GTAC	7 cut(s)	85, 536, 565, 778, 951, 979, 1047
CviAII	CATG	4 cut(s)	524, 542, 715, 899
CviQI	GTAC	7 cut(s)	85, 536, 565, 778, 951, 979, 1047
DdeI	CTNAG	6 cut(s)	300, 447, 840, 996, 1020, 1043
DpnI	GATC	3 cut(s)	219, 897, 1011
DpnII	GATC	3 cut(s)	217, 895, 1009
DraI	TTTAAA	1 cut(s)	991
Eco130I	CCWWGG	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	2 cut(s)	505, 720
ErhI	CCWWGG	1 cut(s)	335
Esp3I	CGTCTC	1 cut(s)	1057
FaeI	CATG	4 cut(s)	527, 545, 718, 902
FatI	CATG	4 cut(s)	523, 541, 714, 898
FauI	CCCGC	1 cut(s)	1099
FbaI	TGATCA	2 cut(s)	895, 1009
Fnu4HI	GCNGC	3 cut(s)	17, 465, 1099
FokI	GGATG	4 cut(s)	327, 352, 403, 490
Fsp4HI	GCNGC	3 cut(s)	17, 465, 1099
FspAI	RTGCGCAY	1 cut(s)	758
FspBI	CTAG	1 cut(s)	654
FspI	TGCGCA	3 cut(s)	207, 599, 758
GlaI	GCGC	5 cut(s)	207, 599, 658, 739, 758
GluI	GCNGC	3 cut(s)	17, 465, 1099
GsaI	CCCAGC	1 cut(s)	744
HaeII	RGCGCY	2 cut(s)	660, 741
HhaI	GCGC	5 cut(s)	208, 600, 659, 740, 759
Hin1II	CATG	4 cut(s)	527, 545, 718, 902
Hin6I	GCGC	5 cut(s)	206, 598, 657, 738, 757
HinP1I	GCGC	5 cut(s)	206, 598, 657, 738, 757
HinfI	GANTC	2 cut(s)	191, 944
HphI	GGTGA	3 cut(s)	443, 551, 642
Hpy166II	GTNNAC	2 cut(s)	145, 857
Hpy188I	TCNGA	4 cut(s)	242, 262, 895, 1003
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	145, 857
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	149, 161, 305, 698
HpyCH4III	ACNGT	4 cut(s)	10, 89, 479, 1051
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	7 cut(s)	64, 145, 400, 503, 718, 773, 1098
HpyF10VI	GCNNNNNNNGC	5 cut(s)	500, 630, 1030, 1039, 1107
HpyF3I	CTNAG	6 cut(s)	300, 447, 840, 996, 1020, 1043
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	4 cut(s)	527, 545, 718, 902
HspAI	GCGC	5 cut(s)	206, 598, 657, 738, 757
KpnI	GGTACC	1 cut(s)	539
Ksp22I	TGATCA	2 cut(s)	895, 1009
Kzo9I	GATC	3 cut(s)	217, 895, 1009
Lsp1109I	GCAGC	3 cut(s)	28, 451, 1110
LweI	GCATC	3 cut(s)	361, 512, 768
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	4 cut(s)	4, 29, 250, 408
MalI	GATC	3 cut(s)	219, 897, 1011
MboI	GATC	3 cut(s)	217, 895, 1009
MboII	GAAGA	8 cut(s)	161, 164, 176, 185, 191, 227, 298, 380
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	6 cut(s)	44, 100, 356, 552, 619, 1004
MlyI	GAGTC	1 cut(s)	938
MmeI	TCCRAC	2 cut(s)	106, 368
MnlI	CCTC	9 cut(s)	60, 122, 152, 371, 397, 578, 742, 803, 823
Mph1103I	ATGCAT	2 cut(s)	505, 720
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	5 cut(s)	12, 306, 786, 816, 990
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	5 cut(s)	500, 630, 1030, 1039, 1107
NdeII	GATC	3 cut(s)	217, 895, 1009
NlaIII	CATG	4 cut(s)	527, 545, 718, 902
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	250
NsbI	TGCGCA	3 cut(s)	207, 599, 758
NsiI	ATGCAT	2 cut(s)	505, 720
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	18, 466, 1100
PleI	GAGTC	1 cut(s)	938
PpsI	GAGTC	1 cut(s)	938
Psp6I	CCWGG	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	537
PstI	CTGCAG	1 cut(s)	402
PstNI	CAGNNNCTG	2 cut(s)	467, 1030
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	7 cut(s)	86, 537, 566, 779, 952, 980, 1048
RsaNI	GTAC	7 cut(s)	85, 536, 565, 778, 951, 979, 1047
SaqAI	TTAA	5 cut(s)	12, 306, 786, 816, 990
SatI	GCNGC	3 cut(s)	17, 465, 1099
Sau3AI	GATC	3 cut(s)	217, 895, 1009
SchI	GAGTC	1 cut(s)	938
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	361, 512, 768
SfcI	CTRYAG	1 cut(s)	398
Sse9I	AATT	6 cut(s)	44, 100, 356, 552, 619, 1004
SsiI	CCGC	1 cut(s)	1106
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	4 cut(s)	10, 89, 479, 1051
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	5 cut(s)	104, 220, 440, 570, 723
TasI	AATT	6 cut(s)	44, 100, 356, 552, 619, 1004
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	5 cut(s)	12, 306, 786, 816, 990
Tru9I	TTAA	5 cut(s)	12, 306, 786, 816, 990
TscAI	CASTG	2 cut(s)	215, 1086
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	16, 464, 1098
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	283, 703
TspRI	CASTG	2 cut(s)	215, 1086
VneI	GTGCAC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	356, 1004
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	654
Zsp2I	ATGCAT	2 cut(s)	505, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.