Rroxscaffold_1G00060490

GDP-L-galactose phosphorylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
82710027 .. 82713640
3614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060490.1

Sequence Viewer

Length: 1410 bp
ATGGTTACTGTCGATCAGCTTCAGGGTGACAATTTCTCGTCGCAATGCGGACCTTTGTCGTTGAAAGGTGTTAGAATCCCACTTTACCGATTTGGTTGCAATTCTGTTTTGGATGATGGTTCTGTTGGAGGGGATGCTTGTTTTTTAGAAGAGGAAGAAGAACAAAGTTTATTGGATTCGATTCTTCTTGCCCAGTGGGAGGATCGGATGTGGAAAGGTTTATTCAGATATGATGTGACAACCTCTGAAATTAAGGTTATTGGTGGGAGGAGAAAGTTTATTGCACAGTGTAATGAAGGATGGGGTACGGATTGTATACCCATACTGGGGAAGGGTAAACTTGGCCGCGGAGATGTGTTTGAGTTTAGTTGGATGGATCGCCAGGAGGAGTTACTATTTTCTGTTGCAAGGGGTGAACAGTCAAACCCGGAGCTTGTTCTTGCGGCCGATGTCCCTGATTCTGCCTTATTGATTACTGTAAATGCATCCCCTGTTGAATATGGCCATGTCTTCCTGATACCATATTGCTCGAACATTCTTTACCAGTTCCTGGATGCAAAATCCTTGGAATTGGCTCTATGCGTTGCTGTTGAAGTAAAGAACTACTCTTTTCGCCTGTTCTATGACTATTCACCCAGTGCTTCTCATATATATTTCCAGGCTTGCTATTTTCAAATCCCTTTACCTGTCGAGTTCATGCCTTCTGATACATTCTTCGTTGATGGCCAAAAGGGGATGCGTATTTCTTCTGTTGCAGACTACCCCATTAAGACCCTTGTGTTTGAGAGCAACCAATTTAAGTTGATGTTGGAGGTTGTTGCTGAGATATGCTCTTCTTTACGGGAAAAGTTCATACTGTATAATATGCTGATATCTGATCATGGCAGAAAGATCTTTTTGTTTCTTCAGCAACAGACATCAAAAACCTCTAGCACCCTTTCAGCTTGGGAATGTGGGGGCTACTTCTTGTTCAAATCAAGGTCTGCATTCGATCAAGCTACTGAGAAGAATTTGCTAAAACAGCTAAACACTGTCTCTATTAATGAGGAAGGTTTCCAAGCAATTCAAGATCTAAGGGAATCTATAGAGCTGCCTTTGATGAACCCTGAGCTGTTTCATAGGGTGGGGATTAAGCCTCCCAAGGGCGTTCTTCTCTATGGACATCCGGGAACAGGAAAGACATTACTAGCTAGAGCAATTTTGTATCAAGTGCCATTGTTATTGAGTGAAGGTTGTAGCTCGGACCGTGAACTTCAGAGAACACTCATGGAGTTGCTGTGCCAGCTAGATGGGTTTGATCAGCTTGGGAAGGTGAAAATCATTATGGCACCAAATAGACTAGATACTCTGGACTCTGCGCTCCTCCGGCCTGGGGGCCTGGACCAAAAGATAAGAGGCTCCGTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

52.65

Weight (kDa)

5.06

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPGP1_N PF26217 58 - 222 2.2e-47 GDPGP1-like, N-terminal domain
GDPGP1_C PF26216 229 - 357 3.8e-38 GDPGP1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1327
AccB7I CCANNNNNTGG 1 cut(s) 550
AccI GTMKAC 1 cut(s) 316
AccII CGCG 1 cut(s) 348
AciI CCGC 4 cut(s) 48, 346, 348, 443
AclWI GGATC 2 cut(s) 210, 384
AcoI YGGCCR 4 cut(s) 343, 444, 502, 724
AcsI RAATTY 1 cut(s) 1009
AcuI CTGAAG 3 cut(s) 5, 890, 1238
AdeI CACNNNGTG 1 cut(s) 638
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 7 cut(s) 199, 326, 327, 550, 1142, 1172, 1372
AgsI TTSAA 6 cut(s) 64, 497, 593, 674, 973, 1067
AjnI CCWGG 5 cut(s) 381, 549, 657, 1369, 1377
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 2 cut(s) 210, 384
AlwNI CAGNNNCTG 1 cut(s) 550
AoxI GGCC 6 cut(s) 343, 444, 502, 724, 1367, 1375
ApeKI GCWGC 1 cut(s) 1090
ApoI RAATTY 1 cut(s) 1009
AseI ATTAAT 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 1360
AspS9I GGNCC 4 cut(s) 50, 1243, 1375, 1381
AsuC2I CCSGG 2 cut(s) 428, 1167
AsuHPI GGTGA 4 cut(s) 38, 425, 624, 1324
AvaII GGWCC 3 cut(s) 50, 1243, 1381
BalI TGGCCA 2 cut(s) 504, 726
BanI GGYRCC 1 cut(s) 1327
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 1077
BccI CCATC 5 cut(s) 110, 294, 367, 716, 1283
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 5 cut(s) 383, 551, 659, 1371, 1379
BclI TGATCA 2 cut(s) 877, 1297
BcnI CCSGG 2 cut(s) 428, 1167
BcoDI GTCTC 1 cut(s) 1039
BfaI CTAG 5 cut(s) 930, 1187, 1191, 1286, 1340
BfmI CTRYAG 1 cut(s) 1083
BglII AGATCT 2 cut(s) 891, 1069
BisI GCNGC 3 cut(s) 346, 444, 1091
BlsI GCNGC 3 cut(s) 347, 445, 1092
Bme1390I CCNGG 7 cut(s) 383, 428, 551, 659, 1167, 1371, 1379
Bme18I GGWCC 3 cut(s) 50, 1243, 1381
BmgT120I GGNCC 4 cut(s) 50, 1243, 1375, 1381
BmiI GGNNCC 3 cut(s) 1329, 1376, 1399
BmrFI CCNGG 7 cut(s) 383, 428, 551, 659, 1167, 1371, 1379
BmrI ACTGGG 3 cut(s) 187, 335, 630
BmsI GCATC 4 cut(s) 124, 494, 544, 726
BmuI ACTGGG 3 cut(s) 187, 335, 630
BoxI GACNNNNGTC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 502
BplI GAGNNNNNCTC 2 cut(s) 815, 847
Bpu10I CCTNAGC 1 cut(s) 1107
BpuMI CCSGG 2 cut(s) 428, 1167
BsaJI CCNNGG 4 cut(s) 346, 564, 1140, 1370
BsaXI ACNNNNNCTCC 2 cut(s) 1262, 1292
Bsc4I CCNNNNNNNGG 7 cut(s) 199, 326, 327, 550, 1142, 1172, 1372
Bse1I ACTGG 4 cut(s) 193, 330, 544, 636
Bse3DI GCAATG 1 cut(s) 50
BseBI CCWGG 5 cut(s) 383, 551, 659, 1371, 1379
BseDI CCNNGG 4 cut(s) 346, 564, 1140, 1370
BseGI GGATG 9 cut(s) 118, 139, 213, 305, 378, 485, 559, 741, 1162
BseLI CCNNNNNNNGG 7 cut(s) 199, 326, 327, 550, 1142, 1172, 1372
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 3 cut(s) 813, 993, 1098
BseNI ACTGG 4 cut(s) 193, 330, 544, 636
BseRI GAGGAG 3 cut(s) 283, 401, 1352
BseX3I CGGCCG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 1077
Bsh1236I CGCG 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 6 cut(s) 345, 446, 504, 726, 1369, 1377
BshNI GGYRCC 1 cut(s) 1327
BsiEI CGRYCG 1 cut(s) 447
BsiSI CCGG 3 cut(s) 428, 1166, 1366
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 7 cut(s) 199, 326, 327, 550, 1142, 1172, 1372
BsmAI GTCTC 1 cut(s) 1039
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 6 cut(s) 345, 446, 504, 726, 1369, 1377
Bsp143I GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
BspACI CCGC 4 cut(s) 48, 346, 348, 443
BspANI GGCC 6 cut(s) 345, 446, 504, 726, 1369, 1377
BspCNI CTCAG 3 cut(s) 814, 994, 1099
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 1329, 1376, 1399
BspPI GGATC 2 cut(s) 210, 384
BspQI GCTCTTC 1 cut(s) 838
BspT107I GGYRCC 1 cut(s) 1327
BsrDI GCAATG 1 cut(s) 50
BsrI ACTGG 4 cut(s) 193, 330, 544, 636
BssECI CCNNGG 4 cut(s) 346, 564, 1140, 1370
BssMI GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
BssNAI GTATAC 1 cut(s) 317
BssT1I CCWWGG 2 cut(s) 564, 1140
Bst1107I GTATAC 1 cut(s) 317
Bst2UI CCWGG 5 cut(s) 383, 551, 659, 1371, 1379
Bst4CI ACNGT 7 cut(s) 10, 288, 420, 478, 858, 1033, 1247
Bst6I CTCTTC 2 cut(s) 144, 838
BstC8I GCNNGC 2 cut(s) 664, 1283
BstDEI CTNAG 4 cut(s) 822, 1002, 1073, 1107
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 9 cut(s) 118, 139, 213, 305, 378, 485, 559, 741, 1162
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 1360
BstKTI GATC 8 cut(s) 16, 205, 379, 880, 894, 994, 1072, 1300
BstMAI GTCTC 1 cut(s) 1039
BstMBI GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 3 cut(s) 1021, 1282, 1366
BstNI CCWGG 5 cut(s) 383, 551, 659, 1371, 1379
BstPAI GACNNNNGTC 1 cut(s) 55
BstSCI CCNGG 7 cut(s) 381, 426, 549, 657, 1165, 1369, 1377
BstSFI CTRYAG 1 cut(s) 1083
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 1077
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 2 cut(s) 891, 1069
BstXI CCANNNNNNTGG 1 cut(s) 1289
BstYI RGATCY 2 cut(s) 891, 1069
BstZ17I GTATAC 1 cut(s) 317
BstZI CGGCCG 1 cut(s) 444
BsuRI GGCC 6 cut(s) 345, 446, 504, 726, 1369, 1377
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 9 cut(s) 118, 139, 213, 305, 378, 485, 559, 741, 1162
BtsIMutI CAGTG 4 cut(s) 200, 293, 643, 1029
Cac8I GCNNGC 2 cut(s) 664, 1283
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 1 cut(s) 1360
Cfr13I GGNCC 4 cut(s) 50, 1243, 1375, 1381
Cfr42I CCGCGG 1 cut(s) 349
CpoI CGGWCCG 1 cut(s) 1243
Csp6I GTAC 1 cut(s) 306
CspI CGGWCCG 1 cut(s) 1243
CviAII CATG 4 cut(s) 506, 697, 881, 1267
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 4 cut(s) 822, 1002, 1073, 1107
DpnI GATC 8 cut(s) 15, 204, 378, 879, 893, 993, 1071, 1299
DpnII GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
DraIII CACNNNGTG 1 cut(s) 638
EaeI YGGCCR 4 cut(s) 343, 444, 502, 724
EagI CGGCCG 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 144, 838
EarI CTCTTC 2 cut(s) 144, 838
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 564, 1140
Eco32I GATATC 1 cut(s) 873
Eco47I GGWCC 3 cut(s) 50, 1243, 1381
Eco52I CGGCCG 1 cut(s) 444
Eco57I CTGAAG 3 cut(s) 5, 890, 1238
EcoO109I RGGNCCY 1 cut(s) 1375
EcoRII CCWGG 5 cut(s) 381, 549, 657, 1369, 1377
EcoRV GATATC 1 cut(s) 873
EcoT14I CCWWGG 2 cut(s) 564, 1140
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 564, 1140
FaeI CATG 4 cut(s) 509, 700, 884, 1270
FaqI GGGAC 1 cut(s) 437
FatI CATG 4 cut(s) 505, 696, 880, 1266
FbaI TGATCA 2 cut(s) 877, 1297
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 346, 444, 1091
FokI GGATG 9 cut(s) 125, 146, 220, 312, 385, 472, 566, 748, 1149
Fsp4HI GCNGC 3 cut(s) 346, 444, 1091
FspBI CTAG 5 cut(s) 930, 1187, 1191, 1286, 1340
GlaI GCGC 1 cut(s) 1359
GluI GCNGC 3 cut(s) 346, 444, 1091
HaeIII GGCC 6 cut(s) 345, 446, 504, 726, 1369, 1377
HapII CCGG 3 cut(s) 428, 1166, 1366
HhaI GCGC 1 cut(s) 1360
Hin1II CATG 4 cut(s) 509, 700, 884, 1270
Hin6I GCGC 1 cut(s) 1358
HinP1I GCGC 1 cut(s) 1358
HinfI GANTC 6 cut(s) 75, 176, 181, 458, 1079, 1352
HpaII CCGG 3 cut(s) 428, 1166, 1366
HphI GGTGA 4 cut(s) 38, 425, 624, 1324
Hpy166II GTNNAC 4 cut(s) 317, 338, 416, 1250
Hpy188I TCNGA 7 cut(s) 207, 227, 247, 706, 877, 1243, 1257
Hpy188III TCNNGA 3 cut(s) 514, 1067, 1349
Hpy8I GTNNAC 4 cut(s) 317, 338, 416, 1250
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 6 cut(s) 290, 325, 711, 1043, 1223, 1303
HpyCH4III ACNGT 7 cut(s) 10, 288, 420, 478, 858, 1033, 1247
HpyCH4V TGCA 7 cut(s) 99, 284, 407, 485, 557, 755, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 1021, 1282, 1366
HpyF3I CTNAG 4 cut(s) 822, 1002, 1073, 1107
Hsp92II CATG 4 cut(s) 509, 700, 884, 1270
HspAI GCGC 1 cut(s) 1358
Ksp22I TGATCA 2 cut(s) 877, 1297
KspI CCGCGG 1 cut(s) 349
Kzo9I GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
LguI GCTCTTC 1 cut(s) 838
LmnI GCTCC 3 cut(s) 430, 1365, 1403
Lsp1109I GCAGC 1 cut(s) 1077
LweI GCATC 4 cut(s) 124, 494, 544, 726
MaeI CTAG 5 cut(s) 930, 1187, 1191, 1286, 1340
MaeIII GTNAC 4 cut(s) 4, 26, 235, 390
MalI GATC 8 cut(s) 15, 204, 378, 879, 893, 993, 1071, 1299
MboI GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
MflI RGATCY 2 cut(s) 891, 1069
MlsI TGGCCA 2 cut(s) 504, 726
MluCI AATT 8 cut(s) 31, 100, 249, 569, 794, 1009, 1062, 1197
MluNI TGGCCA 2 cut(s) 504, 726
MlyI GAGTC 1 cut(s) 1346
MmeI TCCRAC 3 cut(s) 106, 350, 789
Mox20I TGGCCA 2 cut(s) 504, 726
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 2 cut(s) 504, 726
MseI TTAA 5 cut(s) 252, 768, 798, 1041, 1131
Msp20I TGGCCA 2 cut(s) 504, 726
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 3 cut(s) 428, 1166, 1366
MspR9I CCNGG 7 cut(s) 383, 428, 551, 659, 1167, 1371, 1379
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 5 cut(s) 383, 551, 659, 1371, 1379
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 1021, 1282, 1366
NciI CCSGG 2 cut(s) 428, 1167
NdeII GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
NlaIII CATG 4 cut(s) 509, 700, 884, 1270
NlaIV GGNNCC 3 cut(s) 1329, 1376, 1399
NmuCI GTSAC 2 cut(s) 26, 235
NsiI ATGCAT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 838
PctI GAATGC 1 cut(s) 986
PfeI GAWTC 5 cut(s) 75, 176, 181, 458, 1079
PflMI CCANNNNNTGG 1 cut(s) 550
PfoI TCCNGGA 2 cut(s) 549, 1165
PkrI GCNGC 3 cut(s) 347, 445, 1092
PleI GAGTC 1 cut(s) 1346
PpsI GAGTC 1 cut(s) 1346
PshAI GACNNNNGTC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 1041
Psp6I CCWGG 5 cut(s) 381, 549, 657, 1369, 1377
PspGI CCWGG 5 cut(s) 381, 549, 657, 1369, 1377
PspN4I GGNNCC 3 cut(s) 1329, 1376, 1399
PspPI GGNCC 4 cut(s) 50, 1243, 1375, 1381
PsrI GAACNNNNNNTAC 2 cut(s) 524, 556
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 2 cut(s) 891, 1069
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
Rsr2I CGGWCCG 1 cut(s) 1243
RsrII CGGWCCG 1 cut(s) 1243
SacII CCGCGG 1 cut(s) 349
SapI GCTCTTC 1 cut(s) 838
SaqAI TTAA 5 cut(s) 252, 768, 798, 1041, 1131
SatI GCNGC 3 cut(s) 346, 444, 1091
Sau3AI GATC 8 cut(s) 13, 202, 376, 877, 891, 991, 1069, 1297
Sau96I GGNCC 4 cut(s) 50, 1243, 1375, 1381
SchI GAGTC 1 cut(s) 1346
ScrFI CCNGG 7 cut(s) 383, 428, 551, 659, 1167, 1371, 1379
SfaNI GCATC 4 cut(s) 124, 494, 544, 726
SfcI CTRYAG 1 cut(s) 1083
Sfr303I CCGCGG 1 cut(s) 349
SgrBI CCGCGG 1 cut(s) 349
SinI GGWCC 3 cut(s) 50, 1243, 1381
Sse9I AATT 8 cut(s) 31, 100, 249, 569, 794, 1009, 1062, 1197
SsiI CCGC 4 cut(s) 48, 346, 348, 443
SspMI CTAG 5 cut(s) 930, 1187, 1191, 1286, 1340
StyD4I CCNGG 7 cut(s) 381, 426, 549, 657, 1165, 1369, 1377
StyI CCWWGG 2 cut(s) 564, 1140
TaaI ACNGT 7 cut(s) 10, 288, 420, 478, 858, 1033, 1247
TaqI TCGA 5 cut(s) 12, 179, 530, 690, 990
TasI AATT 8 cut(s) 31, 100, 249, 569, 794, 1009, 1062, 1197
TauI GCSGC 2 cut(s) 348, 446
TfiI GAWTC 5 cut(s) 75, 176, 181, 458, 1079
Tru1I TTAA 5 cut(s) 252, 768, 798, 1041, 1131
Tru9I TTAA 5 cut(s) 252, 768, 798, 1041, 1131
TscAI CASTG 4 cut(s) 200, 293, 643, 1036
TseFI GTSAC 2 cut(s) 26, 235
TseI GCWGC 1 cut(s) 1090
Tsp45I GTSAC 2 cut(s) 26, 235
TspDTI ATGAA 5 cut(s) 309, 685, 841, 1106, 1115
TspGWI ACGGA 2 cut(s) 323, 1390
TspRI CASTG 4 cut(s) 200, 293, 643, 1036
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 3 cut(s) 50, 1243, 1381
VspI ATTAAT 1 cut(s) 1041
XapI RAATTY 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 316
XspI CTAG 5 cut(s) 930, 1187, 1191, 1286, 1340
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.