Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010539

Physical Location & Seq

Genomic Coordinates Forward (+)

40747733 .. 40753892

Gene Structure 6160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1272500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGTTACGGTTAAGCAGCTTCAAGATGGTGACTTTTTATCACAATGCTCTCCATTTTCTGTGCAAGGTATAAAAATCCCCTTGTACCGCTTCGGTAGCAATTCGATATTGGATGATGGTTGTGCTGGACGCATTTCGTGCGTGCTAGAAGGAGAAGAAGAAGAGAGTGTATTAGATTCTATTGTTCTTGCTCAGTGGGAAGATCGAATGTGGAAAGGTCTATTCAGATACGATGTGACAGCATCTGAAATTAAGGTCGTTCGTGGCAGGAAGAAGTTCATTGCTCAGTTTAACGAAGGATGGAGTAGGGATTTTATGCCAAGGATGGGCAAGAACATAAGTTTCTGCCAAGAAGATATGTTCAAGTTTAGTTGGATGGAACGGCAGGAGGAGTTACTCTTTTCTGTTGCAAGTGGTGAAAAGTCGAACGCTGAGCTTGTTCTTTCAGCTGCTGTGCCTGATTGTGCCTTACTTATTGCTATCAATGCATCCCCTGTGGAATATGGTCATGTCTTCTTGGTACCACATGGCTCTAAAATTATTCACCAGTTCCTGGATAAAAGATCATTGGAACTTATACTGCACGTTGCTGTTGAAATAAATAATTGCTCTTTTCGCCTATTCTATGACTATTCACCTAGTGCTCCTCGTATGTATTTCCAGGCCTGCTACCTTCAAATCCCTTTACCTGTCGAGTTCATGCGTTTTGATACAATTTTTGGTGCTGGGAAAGAGGGAATGTCTATCTCTTCTGTTGCAGATTACCCCATTAAGACCCTTGTATTAGAGAGCAACCACTTCAAGACAATGATGGAGGTTCTTGCTGAGATCTGTTTGTGTTTACAGGAAAAGCTCATTCCATATAATCTGCTGATATCTGACCATGGCAAAAGGATATTCTTATTTTTTCAGCTACAAACATCAACGAACTCTATCCTTTCTGCTTGGGAGTGTGGGGGATACTTCTTGTTTAAATCAAGATCTGAATTTGATCAAGCTACTGAGGAAGCTCTGCTAAAACAGCTAGGTACAGTCTCCCCTGACGACGAAGGTTTCCAAGCAGTGAAGCTGCTCTGTTGCAGCATTGCGAGCAAGTTTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.67

Weight (kDa)

5.17

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	58 - 223	2.4e-50	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	230 - 365	8.2e-41	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10190 FvH4_3g10190 FvH4_3g10190 FvH4_3g10190
malus_domestica	MD05G1272500.v1.1 MD10G1252600.v1.1
prunus_persica	Prupe.4G090900_v2.0.a1
pyrus_communis	pycom05g25430 pycom10g20830
rosa_chinensis	RchiOBHm_Chr5g0016391
rosa_laevigata	RLG00000032247
rosa_multiflora	Rmu_sc0001235.1_g000033 Rmu_sc0012840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060490
rosa_rugosa	Rorug05G0031900 Rorug05G0031900
rosa_samantha	Rh5AG125600 Rh5BG124600 Rh5CG136900 Rh5DG124300
rosa_wichuraiana	Rw5G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	986
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	3 cut(s)	86, 522, 1030
AfiI	CCNNNNNNNGG	2 cut(s)	326, 553
AgsI	TTSAA	5 cut(s)	23, 364, 596, 677, 802
AjnI	CCWGG	2 cut(s)	552, 660
AluBI	AGCT	9 cut(s)	19, 436, 449, 853, 913, 998, 1010, 1024, 1069
AluI	AGCT	9 cut(s)	19, 436, 449, 853, 913, 998, 1010, 1024, 1069
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	1039
AlwNI	CAGNNNCTG	3 cut(s)	245, 452, 553
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	4 cut(s)	16, 449, 1069, 1080
ApoI	RAATTY	1 cut(s)	986
Asp700I	GAANNNNTTC	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	520
AsuHPI	GGTGA	4 cut(s)	41, 428, 536, 627
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	4 cut(s)	28, 436, 1056, 1092
BccI	CCATC	6 cut(s)	20, 110, 294, 319, 370, 805
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	2 cut(s)	554, 662
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	1 cut(s)	991
BcoDI	GTCTC	1 cut(s)	1039
BfaI	CTAG	3 cut(s)	146, 639, 1025
BfuI	GTATCC	1 cut(s)	953
BglII	AGATCT	2 cut(s)	828, 980
BisI	GCNGC	4 cut(s)	17, 450, 1070, 1081
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	4 cut(s)	18, 451, 1071, 1082
Bme1390I	CCNGG	2 cut(s)	554, 662
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	554, 662
BmsI	GCATC	2 cut(s)	251, 497
BpiI	GAAGAC	1 cut(s)	505
Bpu1102I	GCTNAGC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	320, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 553
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	279, 1083
BseBI	CCWGG	2 cut(s)	554, 662
BseDI	CCNNGG	2 cut(s)	320, 883
BseGI	GGATG	5 cut(s)	118, 305, 330, 381, 488
BseLI	CCNNNNNNNGG	2 cut(s)	326, 553
BseMI	GCAATG	2 cut(s)	279, 1083
BseMII	CTCAG	5 cut(s)	206, 299, 423, 816, 993
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	404, 636
BseXI	GCAGC	4 cut(s)	28, 436, 1056, 1092
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	665
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	326, 553
BsmAI	GTCTC	1 cut(s)	1039
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	202, 563, 828, 980, 991
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	883
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	5 cut(s)	205, 298, 424, 817, 994
BspLI	GGNNCC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	279, 1083
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	320, 883
BssMI	GATC	5 cut(s)	202, 563, 828, 980, 991
BssT1I	CCWWGG	2 cut(s)	320, 883
Bst2UI	CCWGG	2 cut(s)	554, 662
Bst4CI	ACNGT	2 cut(s)	10, 1033
Bst6I	CTCTTC	2 cut(s)	156, 754
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	143, 667, 1090
BstDEI	CTNAG	5 cut(s)	192, 285, 432, 825, 1002
BstDSI	CCRYGG	1 cut(s)	883
BstF5I	GGATG	5 cut(s)	118, 305, 330, 381, 488
BstKTI	GATC	5 cut(s)	205, 566, 831, 983, 994
BstMAI	GTCTC	1 cut(s)	1039
BstMBI	GATC	5 cut(s)	202, 563, 828, 980, 991
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 138, 485, 615, 1021, 1089
BstNI	CCWGG	2 cut(s)	554, 662
BstSCI	CCNGG	2 cut(s)	552, 660
BstV1I	GCAGC	4 cut(s)	28, 436, 1056, 1092
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	2 cut(s)	828, 980
BstYI	RGATCY	2 cut(s)	828, 980
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	1 cut(s)	883
BtsCI	GGATG	5 cut(s)	118, 305, 330, 381, 488
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	2 cut(s)	200, 1068
Cac8I	GCNNGC	3 cut(s)	143, 667, 1090
CaiI	CAGNNNCTG	3 cut(s)	245, 452, 553
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	85, 521, 1029
CviAII	CATG	4 cut(s)	509, 527, 700, 884
CviQI	GTAC	3 cut(s)	85, 521, 1029
DdeI	CTNAG	5 cut(s)	192, 285, 432, 825, 1002
DpnI	GATC	5 cut(s)	204, 565, 830, 982, 993
DpnII	GATC	5 cut(s)	202, 563, 828, 980, 991
DraI	TTTAAA	1 cut(s)	973
DraIII	CACNNNGTG	1 cut(s)	641
Eam1104I	CTCTTC	2 cut(s)	156, 754
EarI	CTCTTC	2 cut(s)	156, 754
Eco130I	CCWWGG	2 cut(s)	320, 883
Eco147I	AGGCCT	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	876
EcoRII	CCWGG	2 cut(s)	552, 660
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	2 cut(s)	320, 883
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	320, 883
FaeI	CATG	4 cut(s)	512, 530, 703, 887
FatI	CATG	4 cut(s)	508, 526, 699, 883
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	4 cut(s)	17, 450, 1070, 1081
FokI	GGATG	5 cut(s)	125, 312, 337, 388, 475
Fsp4HI	GCNGC	4 cut(s)	17, 450, 1070, 1081
FspBI	CTAG	3 cut(s)	146, 639, 1025
GluI	GCNGC	4 cut(s)	17, 450, 1070, 1081
GsaI	CCCAGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	665
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	512, 530, 703, 887
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	4 cut(s)	41, 428, 536, 627
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	4 cut(s)	227, 247, 880, 985
Hpy188III	TCNNGA	4 cut(s)	23, 802, 978, 1104
Hpy8I	GTNNAC	1 cut(s)	842
Hpy99I	CGWCG	1 cut(s)	1049
HpyAV	CCTTC	4 cut(s)	143, 290, 683, 1043
HpyCH4III	ACNGT	2 cut(s)	10, 1033
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	6 cut(s)	64, 410, 488, 583, 758, 1080
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 138, 485, 615, 1021, 1089
HpyF3I	CTNAG	5 cut(s)	192, 285, 432, 825, 1002
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	4 cut(s)	512, 530, 703, 887
KpnI	GGTACC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	5 cut(s)	202, 563, 828, 980, 991
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	4 cut(s)	28, 436, 1056, 1092
LweI	GCATC	2 cut(s)	251, 497
MaeI	CTAG	3 cut(s)	146, 639, 1025
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	4 cut(s)	4, 29, 235, 393
MalI	GATC	5 cut(s)	204, 565, 830, 982, 993
MboI	GATC	5 cut(s)	202, 563, 828, 980, 991
MboII	GAAGA	8 cut(s)	167, 170, 173, 212, 283, 365, 505, 741
MflI	RGATCY	2 cut(s)	828, 980
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	6 cut(s)	100, 249, 537, 604, 714, 986
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	5 cut(s)	382, 657, 727, 808, 997
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	5 cut(s)	12, 252, 291, 771, 972
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	554, 662
MvaI	CCWGG	2 cut(s)	554, 662
MwoI	GCNNNNNNNGC	6 cut(s)	96, 138, 485, 615, 1021, 1089
NcoI	CCATGG	1 cut(s)	883
NdeII	GATC	5 cut(s)	202, 563, 828, 980, 991
NlaIII	CATG	4 cut(s)	512, 530, 703, 887
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	2 cut(s)	29, 235
NsiI	ATGCAT	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	4 cut(s)	18, 451, 1071, 1082
Psp6I	CCWGG	2 cut(s)	552, 660
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	552, 660
PspN4I	GGNNCC	1 cut(s)	522
PstNI	CAGNNNCTG	3 cut(s)	245, 452, 553
PsuI	RGATCY	2 cut(s)	828, 980
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	3 cut(s)	86, 522, 1030
RsaNI	GTAC	3 cut(s)	85, 521, 1029
SaqAI	TTAA	5 cut(s)	12, 252, 291, 771, 972
SatI	GCNGC	4 cut(s)	17, 450, 1070, 1081
Sau3AI	GATC	5 cut(s)	202, 563, 828, 980, 991
ScrFI	CCNGG	2 cut(s)	554, 662
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	251, 497
Sse9I	AATT	6 cut(s)	100, 249, 537, 604, 714, 986
SseBI	AGGCCT	1 cut(s)	665
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	3 cut(s)	146, 639, 1025
StuI	AGGCCT	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	552, 660
StyI	CCWWGG	2 cut(s)	320, 883
TaaI	ACNGT	2 cut(s)	10, 1033
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	4 cut(s)	104, 205, 425, 693
TasI	AATT	6 cut(s)	100, 249, 537, 604, 714, 986
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	5 cut(s)	12, 252, 291, 771, 972
Tru9I	TTAA	5 cut(s)	12, 252, 291, 771, 972
TscAI	CASTG	2 cut(s)	200, 1068
TseFI	GTSAC	2 cut(s)	29, 235
TseI	GCWGC	4 cut(s)	16, 449, 1069, 1080
Tsp45I	GTSAC	2 cut(s)	29, 235
TspDTI	ATGAA	2 cut(s)	268, 688
TspRI	CASTG	2 cut(s)	200, 1068
Van91I	CCANNNNNTGG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	986
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	3 cut(s)	146, 639, 1025
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.