Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010539

Physical Location & Seq

Genomic Coordinates Reverse (-)

12002486 .. 12005066

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGGAAAGGTTTATTCAGATATGATGTGACAACCTCTGAAATTAAGGTTGTTGGTGGAAGGAGAAAGTTTATTGCACAGTTTAACGAAGGATGGGGTACGGATTGTATACCCAAACTGGGCAAGGGTAAAATCAGCCAAGGATTGTTTGAGTTTAGCTGGATGGATCGCCAGGAGGAGTTACTATTTTCTGTTGCAAGGGGTGAACAGTCAAACCCGGAGCTTGTTCTTGCGGCTGATGTCCCTGATTCTGCCTTATTGATTACTGTAAATGCATCCCCTGTTGAATATGGCCATGTCTTCCTGATACCATATTGCTCGAACATTCTTTACCAGTTCCTGGATGCAAAATCCTTGGAATTGGCTCTATGCGTTGCTGTTGAAGTAAAGAACTACTCTTTTCGCCTGTTCTATGACTATTCACCCAGTGCTTCTCATATATATTTCCAGGCTTGCTATTTTCAAATCCCTTTACCTGTCGAGTTTATGCCTTCTGATACATTCTTCATTGATGGCCAAAAGGGGATGCTTATTTCTTCTGTTGCAGACTACCCCATTAAGACCCTTGTGTTTGAGAGCAACCACTTTAAGTTGATGTTGGAGGTTGTTGCTGAGATATGCTCTTCTTTACGGGGAAAGCTCATATTGTATAATCTGCTGATATCTGATCATGGCAGAAAGATCTTTTTGTTTCTTCAGCAACAGACTTCAAAAACCTCTTGCACCCTTTCAGCTTGGGAATGTGGGGGCTACTTCTTGTTTAAATCAAGGTCTGCATTCGATCAATCTACTGAGAAGAATTTGCTAAAACAGCTAAGTACTGTCTCCATTGATGAGGAGGGTTTCCAAGCAGTTAAGCTGCTGTGTAGCAACATTGCGAGCAAGTTTACTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.71

Weight (kDa)

5.88

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	1 - 152	4.5e-41	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	159 - 295	1.8e-40	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10190 FvH4_3g10190 FvH4_3g10190 FvH4_3g10190
malus_domestica	MD05G1272500.v1.1 MD10G1252600.v1.1
prunus_persica	Prupe.4G090900_v2.0.a1
pyrus_communis	pycom05g25430 pycom10g20830
rosa_chinensis	RchiOBHm_Chr5g0016391
rosa_laevigata	RLG00000032247
rosa_multiflora	Rmu_sc0001235.1_g000033 Rmu_sc0012840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060490
rosa_rugosa	Rorug05G0031900 Rorug05G0031900
rosa_samantha	Rh5AG125600 Rh5BG124600 Rh5CG136900 Rh5DG124300
rosa_wichuraiana	Rw5G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	2 cut(s)	292, 514
AcsI	RAATTY	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	680
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	100, 820
AfiI	CCNNNNNNNGG	2 cut(s)	119, 340
AgsI	TTSAA	4 cut(s)	287, 383, 464, 711
AjnI	CCWGG	3 cut(s)	171, 339, 447
AluBI	AGCT	6 cut(s)	159, 223, 640, 734, 814, 859
AluI	AGCT	6 cut(s)	159, 223, 640, 734, 814, 859
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	340
AoxI	GGCC	2 cut(s)	292, 514
ApeKI	GCWGC	1 cut(s)	859
ApoI	RAATTY	1 cut(s)	799
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	215, 414
BalI	TGGCCA	2 cut(s)	294, 516
BbsI	GAAGAC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	846
BccI	CCATC	3 cut(s)	87, 157, 506
BciT130I	CCWGG	3 cut(s)	173, 341, 449
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	829
BglII	AGATCT	1 cut(s)	681
BisI	GCNGC	2 cut(s)	234, 860
BlsI	GCNGC	2 cut(s)	235, 861
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	4 cut(s)	173, 218, 341, 449
BmrFI	CCNGG	4 cut(s)	173, 218, 341, 449
BmrI	ACTGGG	2 cut(s)	128, 420
BmsI	GCATC	3 cut(s)	284, 334, 516
BmuI	ACTGGG	2 cut(s)	128, 420
BpiI	GAAGAC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	139, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 340
Bse1I	ACTGG	3 cut(s)	123, 334, 426
Bse3DI	GCAATG	1 cut(s)	873
BseBI	CCWGG	3 cut(s)	173, 341, 449
BseDI	CCNNGG	2 cut(s)	139, 354
BseGI	GGATG	5 cut(s)	98, 168, 275, 349, 531
BseLI	CCNNNNNNNGG	2 cut(s)	119, 340
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	2 cut(s)	603, 783
BseNI	ACTGG	3 cut(s)	123, 334, 426
BseRI	GAGGAG	2 cut(s)	191, 851
BseXI	GCAGC	1 cut(s)	846
BshFI	GGCC	2 cut(s)	294, 516
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	119, 340
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	2 cut(s)	294, 516
Bsp143I	GATC	4 cut(s)	166, 667, 681, 781
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	294, 516
BspCNI	CTCAG	2 cut(s)	604, 784
BspPI	GGATC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	873
BsrI	ACTGG	3 cut(s)	123, 334, 426
BssECI	CCNNGG	2 cut(s)	139, 354
BssMI	GATC	4 cut(s)	166, 667, 681, 781
BssNAI	GTATAC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	139, 354
Bst1107I	GTATAC	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	173, 341, 449
Bst4CI	ACNGT	4 cut(s)	81, 210, 268, 823
Bst6I	CTCTTC	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	454, 880
BstDEI	CTNAG	3 cut(s)	612, 792, 815
BstF5I	GGATG	5 cut(s)	98, 168, 275, 349, 531
BstKTI	GATC	4 cut(s)	169, 670, 684, 784
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	4 cut(s)	166, 667, 681, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	811
BstNI	CCWGG	3 cut(s)	173, 341, 449
BstSCI	CCNGG	4 cut(s)	171, 216, 339, 447
BstV1I	GCAGC	1 cut(s)	846
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BstZ17I	GTATAC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	294, 516
BtsCI	GGATG	5 cut(s)	98, 168, 275, 349, 531
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	454, 880
CaiI	CAGNNNCTG	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	99, 819
CviAII	CATG	2 cut(s)	296, 671
CviQI	GTAC	2 cut(s)	99, 819
DdeI	CTNAG	3 cut(s)	612, 792, 815
DpnI	GATC	4 cut(s)	168, 669, 683, 783
DpnII	GATC	4 cut(s)	166, 667, 681, 781
DraI	TTTAAA	1 cut(s)	763
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	292, 514
Eam1104I	CTCTTC	1 cut(s)	628
EarI	CTCTTC	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	139, 354
Eco32I	GATATC	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	171, 339, 447
EcoRV	GATATC	1 cut(s)	663
EcoT14I	CCWWGG	2 cut(s)	139, 354
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	139, 354
FaeI	CATG	2 cut(s)	299, 674
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	295, 670
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	234, 860
FokI	GGATG	5 cut(s)	105, 175, 262, 356, 538
Fsp4HI	GCNGC	2 cut(s)	234, 860
GluI	GCNGC	2 cut(s)	234, 860
HaeIII	GGCC	2 cut(s)	294, 516
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	2 cut(s)	299, 674
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	215, 414
Hpy166II	GTNNAC	3 cut(s)	110, 206, 888
Hpy188I	TCNGA	4 cut(s)	20, 40, 496, 667
Hpy188III	TCNNGA	2 cut(s)	304, 894
Hpy8I	GTNNAC	3 cut(s)	110, 206, 888
HpyAV	CCTTC	3 cut(s)	54, 83, 501
HpyCH4III	ACNGT	4 cut(s)	81, 210, 268, 823
HpyCH4V	TGCA	7 cut(s)	77, 197, 275, 347, 545, 723, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	811
HpyF3I	CTNAG	3 cut(s)	612, 792, 815
Hsp92II	CATG	2 cut(s)	299, 674
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	4 cut(s)	166, 667, 681, 781
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	846
LweI	GCATC	3 cut(s)	284, 334, 516
MaeIII	GTNAC	2 cut(s)	28, 180
MalI	GATC	4 cut(s)	168, 669, 683, 783
MboI	GATC	4 cut(s)	166, 667, 681, 781
MboII	GAAGA	6 cut(s)	292, 496, 528, 615, 686, 808
MflI	RGATCY	1 cut(s)	681
MlsI	TGGCCA	2 cut(s)	294, 516
MluCI	AATT	3 cut(s)	42, 359, 799
MluNI	TGGCCA	2 cut(s)	294, 516
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	6 cut(s)	46, 169, 595, 727, 829, 832
Mox20I	TGGCCA	2 cut(s)	294, 516
Mph1103I	ATGCAT	1 cut(s)	277
MscI	TGGCCA	2 cut(s)	294, 516
MseI	TTAA	6 cut(s)	45, 84, 558, 588, 762, 855
Msp20I	TGGCCA	2 cut(s)	294, 516
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	4 cut(s)	173, 218, 341, 449
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	3 cut(s)	173, 341, 449
MwoI	GCNNNNNNNGC	1 cut(s)	811
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	4 cut(s)	166, 667, 681, 781
NlaIII	CATG	2 cut(s)	299, 674
NmuCI	GTSAC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	628
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	235, 861
Psp6I	CCWGG	3 cut(s)	171, 339, 447
PspGI	CCWGG	3 cut(s)	171, 339, 447
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	681
RsaI	GTAC	2 cut(s)	100, 820
RsaNI	GTAC	2 cut(s)	99, 819
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	6 cut(s)	45, 84, 558, 588, 762, 855
SatI	GCNGC	2 cut(s)	234, 860
Sau3AI	GATC	4 cut(s)	166, 667, 681, 781
ScaI	AGTACT	1 cut(s)	820
ScrFI	CCNGG	4 cut(s)	173, 218, 341, 449
SfaNI	GCATC	3 cut(s)	284, 334, 516
Sse9I	AATT	3 cut(s)	42, 359, 799
SsiI	CCGC	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	171, 216, 339, 447
StyI	CCWWGG	2 cut(s)	139, 354
TaaI	ACNGT	4 cut(s)	81, 210, 268, 823
TaqI	TCGA	3 cut(s)	320, 480, 780
TasI	AATT	3 cut(s)	42, 359, 799
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	6 cut(s)	45, 84, 558, 588, 762, 855
Tru9I	TTAA	6 cut(s)	45, 84, 558, 588, 762, 855
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	859
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	496
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	340
XapI	RAATTY	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	109
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.