Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010539

Physical Location & Seq

Genomic Coordinates Forward (+)

26784451 .. 26786583

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25430.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGTTACGGTTAAGCAGCTTCAAGATGTTAACTTTTCATCACAATGCTCTCCATTTTCTTTGCAAGGTATAAAAATCCCCTTGTACCGCTTCGGTAGCAATTCGATATTGGATGATGGTTGTGCTGGACGCATTTCGTGCGTTCTAGAAGGAGAAGAAGAAGAGAGTGTATTAGATTCTGTTGTTCTTGCTCAGTGGGAAGATCGAATGTGGAAAGGTCTATTCAGATACGATGTGACAGCATCTGAAATTAAGTTCGTTGGTGGCAGGAAGAAGTTCATTGCTCAGTTTAACGAAGGATGGAGTAGGGATTTTATGCTGAGGATGGGCAAGAACACAAGTTTCTGCCAAGAAGATTTGTTCAAGTTTAGTTGGATGGAACGACAGGAGGAGTTACTCTTTTCTGTTGCAAGTGGTGAAAAGTCGAACGCTGAGCTTGTTCTTTCAGCTGCTGTGCCTGATTGTGCCTTACTTATTGTTATCAATGCGTCCCCCGTGGAATATGGTCATGTCTTCTTGGTACCACATGGCTCTAAAATTATTCACCAGTTCCTGGATAAAAGATCATTGGAACTTGTACTGCACGTTGCTGTTGAAATAAATAATTGCTCTTTTCGCCTATTCTATGGCTATTCACCTAGTGCTCCTCGTATGTATTTCCAGGCCTGCTACCTTCAAATCCCTTTACCTGTTGAGTTCATGCGTTTTGATACAATTTTTGGTGCTGGGAAAGAGGGGATGCGTATCTCTTCTGTTGCTGATTACCCCATTAAGACCCTCGTATTACAGAGCAACCACTTTAAGACGATGATGGAGGTTCTTGCTGAGATCTGTTCGTGCTTACAGGAAAAGCTCATTCCATATAATCTGCTGATATCTGACCATGGCAAAAGGATATTCTTATTTTTTCAGCTACAAACATCAACGAACTCTATCCTTTCTGCTTGGGAGTGTGGGGGATACTTCTTGTTTAAATCAAGATCTGAATTTGATCAAGCTACCGAGGAGGCTCTGCTAAAACAGCTAAGTACAGTCTCCCTTGACGACAAAGGTTTCCAAGCAGTGAAGCTGCTCTGTTGCAGCGTTGCGAGCAAGTTTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.65

Weight (kDa)

5.65

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10190 FvH4_3g10190 FvH4_3g10190 FvH4_3g10190
malus_domestica	MD05G1272500.v1.1 MD10G1252600.v1.1
prunus_persica	Prupe.4G090900_v2.0.a1
pyrus_communis	pycom05g25430 pycom10g20830
rosa_chinensis	RchiOBHm_Chr5g0016391
rosa_laevigata	RLG00000032247
rosa_multiflora	Rmu_sc0001235.1_g000033 Rmu_sc0012840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060490
rosa_rugosa	Rorug05G0031900 Rorug05G0031900
rosa_samantha	Rh5AG125600 Rh5BG124600 Rh5CG136900 Rh5DG124300
rosa_wichuraiana	Rw5G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	986
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	4 cut(s)	86, 522, 579, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	4 cut(s)	23, 364, 596, 677
AjnI	CCWGG	2 cut(s)	552, 660
AluBI	AGCT	8 cut(s)	19, 436, 449, 853, 913, 998, 1024, 1069
AluI	AGCT	8 cut(s)	19, 436, 449, 853, 913, 998, 1024, 1069
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	1039
AlwNI	CAGNNNCTG	3 cut(s)	245, 452, 553
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	4 cut(s)	16, 449, 1069, 1080
ApoI	RAATTY	1 cut(s)	986
Asp700I	GAANNNNTTC	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	520
AsuHPI	GGTGA	3 cut(s)	428, 536, 627
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	646
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	4 cut(s)	28, 436, 1056, 1092
BccI	CCATC	5 cut(s)	110, 294, 319, 370, 805
BciT130I	CCWGG	2 cut(s)	554, 662
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	1 cut(s)	991
BcoDI	GTCTC	1 cut(s)	1039
BfaI	CTAG	2 cut(s)	146, 639
BfuI	GTATCC	1 cut(s)	953
BglII	AGATCT	2 cut(s)	828, 980
BisI	GCNGC	4 cut(s)	17, 450, 1070, 1081
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	4 cut(s)	18, 451, 1071, 1082
Bme1390I	CCNGG	2 cut(s)	554, 662
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	554, 662
BmsI	GCATC	2 cut(s)	251, 729
BpiI	GAAGAC	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	743
BsaJI	CCNNGG	3 cut(s)	495, 883, 1002
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	743
BseBI	CCWGG	2 cut(s)	554, 662
BseDI	CCNNGG	3 cut(s)	495, 883, 1002
BseGI	GGATG	5 cut(s)	118, 305, 330, 381, 744
BseJI	GATNNNNATC	1 cut(s)	743
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	5 cut(s)	206, 299, 311, 423, 816
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	3 cut(s)	404, 636, 1019
BseXI	GCAGC	4 cut(s)	28, 436, 1056, 1092
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	665
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	646
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	1039
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	202, 563, 828, 980, 991
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	883
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	5 cut(s)	205, 298, 312, 424, 817
BspLI	GGNNCC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	495, 883, 1002
BssMI	GATC	5 cut(s)	202, 563, 828, 980, 991
BssT1I	CCWWGG	1 cut(s)	883
Bst2UI	CCWGG	2 cut(s)	554, 662
Bst4CI	ACNGT	2 cut(s)	10, 1033
Bst6I	CTCTTC	2 cut(s)	156, 754
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	667, 1090
BstDEI	CTNAG	6 cut(s)	192, 285, 320, 432, 825, 1025
BstDSI	CCRYGG	2 cut(s)	495, 883
BstF5I	GGATG	5 cut(s)	118, 305, 330, 381, 744
BstKTI	GATC	5 cut(s)	205, 566, 831, 983, 994
BstMAI	GTCTC	1 cut(s)	1039
BstMBI	GATC	5 cut(s)	202, 563, 828, 980, 991
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 138, 615, 1021, 1089
BstNI	CCWGG	2 cut(s)	554, 662
BstSCI	CCNGG	2 cut(s)	552, 660
BstV1I	GCAGC	4 cut(s)	28, 436, 1056, 1092
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	2 cut(s)	828, 980
BstYI	RGATCY	2 cut(s)	828, 980
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	2 cut(s)	495, 883
BtsCI	GGATG	5 cut(s)	118, 305, 330, 381, 744
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	2 cut(s)	200, 1068
Cac8I	GCNNGC	2 cut(s)	667, 1090
CaiI	CAGNNNCTG	3 cut(s)	245, 452, 553
CseI	GACGC	2 cut(s)	138, 477
Csp6I	GTAC	4 cut(s)	85, 521, 578, 1029
CviAII	CATG	4 cut(s)	509, 527, 700, 884
CviQI	GTAC	4 cut(s)	85, 521, 578, 1029
DdeI	CTNAG	6 cut(s)	192, 285, 320, 432, 825, 1025
DpnI	GATC	5 cut(s)	204, 565, 830, 982, 993
DpnII	GATC	5 cut(s)	202, 563, 828, 980, 991
DraI	TTTAAA	1 cut(s)	973
DraIII	CACNNNGTG	1 cut(s)	641
Eam1104I	CTCTTC	2 cut(s)	156, 754
EarI	CTCTTC	2 cut(s)	156, 754
Eco130I	CCWWGG	1 cut(s)	883
Eco147I	AGGCCT	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	876
EcoRII	CCWGG	2 cut(s)	552, 660
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	883
ErhI	CCWWGG	1 cut(s)	883
FaeI	CATG	4 cut(s)	512, 530, 703, 887
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	508, 526, 699, 883
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	4 cut(s)	17, 450, 1070, 1081
FokI	GGATG	5 cut(s)	125, 312, 337, 388, 751
Fsp4HI	GCNGC	4 cut(s)	17, 450, 1070, 1081
FspBI	CTAG	2 cut(s)	146, 639
GluI	GCNGC	4 cut(s)	17, 450, 1070, 1081
GsaI	CCCAGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	665
HgaI	GACGC	2 cut(s)	138, 477
Hin1II	CATG	4 cut(s)	512, 530, 703, 887
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	176
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	3 cut(s)	428, 536, 627
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	227, 247, 880, 985
Hpy188III	TCNNGA	4 cut(s)	23, 146, 978, 1104
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	143, 290, 683
HpyCH4III	ACNGT	2 cut(s)	10, 1033
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	4 cut(s)	64, 410, 583, 1080
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 138, 615, 1021, 1089
HpyF3I	CTNAG	6 cut(s)	192, 285, 320, 432, 825, 1025
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	4 cut(s)	512, 530, 703, 887
KpnI	GGTACC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	991
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	202, 563, 828, 980, 991
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	4 cut(s)	28, 436, 1056, 1092
LweI	GCATC	2 cut(s)	251, 729
MaeI	CTAG	2 cut(s)	146, 639
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	4, 235, 393
MalI	GATC	5 cut(s)	204, 565, 830, 982, 993
MboI	GATC	5 cut(s)	202, 563, 828, 980, 991
MboII	GAAGA	8 cut(s)	167, 170, 173, 212, 283, 365, 505, 741
MflI	RGATCY	2 cut(s)	828, 980
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	6 cut(s)	100, 249, 537, 604, 714, 986
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	315, 382, 657, 727, 788, 808, 997, 1000
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	7 cut(s)	12, 30, 252, 291, 771, 801, 972
MslI	CAYNNNNRTG	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	554, 662
MvaI	CCWGG	2 cut(s)	554, 662
MwoI	GCNNNNNNNGC	5 cut(s)	96, 138, 615, 1021, 1089
NcoI	CCATGG	1 cut(s)	883
NdeII	GATC	5 cut(s)	202, 563, 828, 980, 991
NlaIII	CATG	4 cut(s)	512, 530, 703, 887
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	4 cut(s)	18, 451, 1071, 1082
Psp6I	CCWGG	2 cut(s)	552, 660
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	552, 660
PspN4I	GGNNCC	1 cut(s)	522
PstNI	CAGNNNCTG	3 cut(s)	245, 452, 553
PsuI	RGATCY	2 cut(s)	828, 980
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	86, 522, 579, 1030
RsaNI	GTAC	4 cut(s)	85, 521, 578, 1029
RseI	CAYNNNNRTG	1 cut(s)	43
SaqAI	TTAA	7 cut(s)	12, 30, 252, 291, 771, 801, 972
SatI	GCNGC	4 cut(s)	17, 450, 1070, 1081
Sau3AI	GATC	5 cut(s)	202, 563, 828, 980, 991
ScrFI	CCNGG	2 cut(s)	554, 662
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	251, 729
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	6 cut(s)	100, 249, 537, 604, 714, 986
SseBI	AGGCCT	1 cut(s)	665
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	2 cut(s)	146, 639
StuI	AGGCCT	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	552, 660
StyI	CCWWGG	1 cut(s)	883
TaaI	ACNGT	2 cut(s)	10, 1033
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	104, 205, 425
TasI	AATT	6 cut(s)	100, 249, 537, 604, 714, 986
TatI	WGTACW	2 cut(s)	577, 1028
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	7 cut(s)	12, 30, 252, 291, 771, 801, 972
Tru9I	TTAA	7 cut(s)	12, 30, 252, 291, 771, 801, 972
TscAI	CASTG	2 cut(s)	200, 1068
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	4 cut(s)	16, 449, 1069, 1080
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	27, 268, 688
TspRI	CASTG	2 cut(s)	200, 1068
Van91I	CCANNNNNTGG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	986
XbaI	TCTAGA	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	2 cut(s)	146, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.