Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001235.1

Orthogroup ID

OG0010539

Physical Location & Seq

Genomic Coordinates Forward (+)

164844 .. 168050

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001235.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atggttaccgtcgatcagcttcagggtgacaatttctcgtcgcaatgcggacctttgtcgttgaaaggtgttagaatccctctttaccgatttggttgcaattctgttttggatgatggttctgttggaggggatgcttgtttttcagaagaggaagaagaacagagtttattggattcgattcttcttgcccagtgggaggatcggatgtggaaaggtttattcagatatgatgtgacaacctctgaaattaaggttgttggtggaaggagaaagtttattgcacagtttaacgaaggatggggtacggattgtatacccaaactgggcaagggtaaaatcaggcaaggattgtttgagtttagctggatggatcgccgggaggagttactattttctgttgcaaggggtgaacagtcaaacccggagcttgttcttgcggctgatgtccctgattctgccttattgattactgtaaatgcatcccctgttgaatatggccatgtcttcctgataccatattgctcgaacattctttaccagttcctggatgcaaaatccttggaattggctctatgcgttgctgttgaagtaaagaactactcttttcgcctgttctatgactattcacccagtgcttctcatatatatttccaggcttgctattttcaaatccctttacctgtcgagtttatgccttctgatacattcttcattgatggccaaaaggggatgcttatttcttctgttgcagactaccccattaagacccttgtgtttgagagcaaccactttaagttgatgttggaggttgttgctgagatatgctcttctttacggggaaagctcatattgtataatctgctgatatctgatcatggcagaaagatctttttgtttcttcagcaacagacttcaaaaacctcttgcaccctttcagcttgggaatgtgggggctacttcttgtttaaatcaaggtctgcattcgatcaatctactgagaagaatttgctaaaacagctaagtactgtctccattgatgaggagggtttccaagcaagcacggtgaagttcacaaagaagacacatgagaaaaccgaagaccatttcgaagggacttcaagtgttggacagattgaagttcttcctatcgcagctctgatgatgaacgcatccttgtcaagtaatggccttaggtatgtggtcggctgccgaagtaaaatcccaagaatgaaacttacaccaagcactacgattcaagatctaagggaatctatagagctgcctttgatgaaccctgagctgtttcatagggtggggattaagcttcccaagggcgttcttctctatggacattcgggaacaggaaagacattactagctagagcaattttgtatcaagtgccattgttgacagagaatcctcatggagttgctgttccagctggatggtttgatcagcttggggaggtgaaaatcattatggcaacaaatagaccagatactctagactctgcgctcctccggcctgggggcctggaccaaaagatggaggctccgttgcctaatgagcagtctaagaatggagattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

531

Amino Acids

59.27

Weight (kDa)

5.54

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10190 FvH4_3g10190 FvH4_3g10190 FvH4_3g10190
malus_domestica	MD05G1272500.v1.1 MD10G1252600.v1.1
prunus_persica	Prupe.4G090900_v2.0.a1
pyrus_communis	pycom05g25430 pycom10g20830
rosa_chinensis	RchiOBHm_Chr5g0016391
rosa_laevigata	RLG00000032247
rosa_multiflora	Rmu_sc0001235.1_g000033 Rmu_sc0012840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060490
rosa_rugosa	Rorug05G0031900 Rorug05G0031900
rosa_samantha	Rh5AG125600 Rh5BG124600 Rh5CG136900 Rh5DG124300
rosa_wichuraiana	Rw5G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	547, 1549
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	2 cut(s)	48, 440
AclWI	GGATC	2 cut(s)	210, 381
AcoI	YGGCCR	2 cut(s)	499, 721
AcsI	RAATTY	1 cut(s)	1006
AcuI	CTGAAG	2 cut(s)	5, 887
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	307, 1027
AfiI	CCNNNNNNNGG	5 cut(s)	199, 326, 547, 1531, 1549
AgsI	TTSAA	8 cut(s)	64, 494, 590, 671, 918, 1122, 1139, 1259
AjnI	CCWGG	4 cut(s)	546, 654, 1528, 1536
AloI	GAACNNNNNNTCC	2 cut(s)	1422, 1454
Alw26I	GTCTC	1 cut(s)	1036
AlwI	GGATC	2 cut(s)	210, 381
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	5 cut(s)	499, 721, 1189, 1526, 1534
ApeKI	GCWGC	3 cut(s)	1154, 1209, 1282
ApoI	RAATTY	1 cut(s)	1006
Asp700I	GAANNNNTTC	1 cut(s)	1143
AspLEI	GCGC	1 cut(s)	1519
AspS9I	GGNCC	3 cut(s)	50, 1534, 1540
AsuC2I	CCSGG	2 cut(s)	380, 425
AsuHPI	GGTGA	5 cut(s)	38, 422, 621, 1078, 1483
AsuII	TTCGAA	1 cut(s)	1110
AvaII	GGWCC	2 cut(s)	50, 1540
AxyI	CCTNAGG	1 cut(s)	1193
BalI	TGGCCA	2 cut(s)	501, 723
BbsI	GAAGAC	3 cut(s)	499, 1088, 1107
BbvI	GCAGC	3 cut(s)	1166, 1196, 1269
BccI	CCATC	6 cut(s)	110, 294, 364, 713, 1443, 1543
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	4 cut(s)	548, 656, 1530, 1538
BclI	TGATCA	2 cut(s)	874, 1456
BcnI	CCSGG	2 cut(s)	380, 425
BcoDI	GTCTC	1 cut(s)	1036
BfaI	CTAG	3 cut(s)	1379, 1383, 1508
BfmI	CTRYAG	1 cut(s)	1275
BglII	AGATCT	2 cut(s)	888, 1261
BisI	GCNGC	4 cut(s)	441, 1155, 1210, 1283
BlsI	GCNGC	4 cut(s)	442, 1156, 1211, 1284
BmcAI	AGTACT	1 cut(s)	1027
Bme1390I	CCNGG	6 cut(s)	380, 425, 548, 656, 1530, 1538
Bme18I	GGWCC	2 cut(s)	50, 1540
BmgT120I	GGNCC	3 cut(s)	50, 1534, 1540
BmiI	GGNNCC	2 cut(s)	1535, 1557
BmrFI	CCNGG	6 cut(s)	380, 425, 548, 656, 1530, 1538
BmrI	ACTGGG	3 cut(s)	187, 335, 627
BmsI	GCATC	5 cut(s)	124, 491, 541, 723, 1181
BmuI	ACTGGG	3 cut(s)	187, 335, 627
BoxI	GACNNNNGTC	1 cut(s)	55
BpiI	GAAGAC	3 cut(s)	499, 1088, 1107
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
Bpu10I	CCTNAGC	1 cut(s)	1299
Bpu14I	TTCGAA	1 cut(s)	1110
BpuMI	CCSGG	2 cut(s)	380, 425
BsaJI	CCNNGG	3 cut(s)	561, 1332, 1529
BsaXI	ACNNNNNCTCC	4 cut(s)	1422, 1452, 1544, 1574
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 326, 547, 1531, 1549
Bse1I	ACTGG	4 cut(s)	193, 330, 541, 633
Bse21I	CCTNAGG	1 cut(s)	1193
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	4 cut(s)	548, 656, 1530, 1538
BseDI	CCNNGG	3 cut(s)	561, 1332, 1529
BseLI	CCNNNNNNNGG	5 cut(s)	199, 326, 547, 1531, 1549
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	810, 990, 1290
BseNI	ACTGG	4 cut(s)	193, 330, 541, 633
BseRI	GAGGAG	3 cut(s)	398, 1058, 1511
BseXI	GCAGC	3 cut(s)	1166, 1196, 1269
BshFI	GGCC	5 cut(s)	501, 723, 1191, 1528, 1536
BsiSI	CCGG	3 cut(s)	379, 425, 1525
BslFI	GGGAC	2 cut(s)	434, 1129
BslI	CCNNNNNNNGG	5 cut(s)	199, 326, 547, 1531, 1549
BsmAI	GTCTC	1 cut(s)	1036
BsmFI	GGGAC	2 cut(s)	434, 1129
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	5 cut(s)	501, 723, 1191, 1528, 1536
Bsp119I	TTCGAA	1 cut(s)	1110
Bsp143I	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
BspACI	CCGC	2 cut(s)	48, 440
BspANI	GGCC	5 cut(s)	501, 723, 1191, 1528, 1536
BspCNI	CTCAG	3 cut(s)	811, 991, 1291
BspLI	GGNNCC	2 cut(s)	1535, 1557
BspPI	GGATC	2 cut(s)	210, 381
BspQI	GCTCTTC	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	1110
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	4 cut(s)	193, 330, 541, 633
BssECI	CCNNGG	3 cut(s)	561, 1332, 1529
BssMI	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
BssNAI	GTATAC	1 cut(s)	317
BssT1I	CCWWGG	2 cut(s)	561, 1332
Bst1107I	GTATAC	1 cut(s)	317
Bst2UI	CCWGG	4 cut(s)	548, 656, 1530, 1538
Bst4CI	ACNGT	6 cut(s)	10, 288, 417, 475, 1030, 1066
Bst6I	CTCTTC	2 cut(s)	144, 835
BstBI	TTCGAA	1 cut(s)	1110
BstC8I	GCNNGC	2 cut(s)	661, 1060
BstDEI	CTNAG	7 cut(s)	819, 999, 1022, 1193, 1265, 1299, 1578
BstEII	GGTNACC	1 cut(s)	4
BstHHI	GCGC	1 cut(s)	1519
BstKTI	GATC	8 cut(s)	16, 205, 376, 877, 891, 991, 1264, 1459
BstMAI	GTCTC	1 cut(s)	1036
BstMBI	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
BstMWI	GCNNNNNNNGC	4 cut(s)	1018, 1442, 1525, 1570
BstNI	CCWGG	4 cut(s)	548, 656, 1530, 1538
BstPAI	GACNNNNGTC	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	6 cut(s)	378, 423, 546, 654, 1528, 1536
BstSFI	CTRYAG	1 cut(s)	1275
BstV1I	GCAGC	3 cut(s)	1166, 1196, 1269
BstV2I	GAAGAC	3 cut(s)	499, 1088, 1107
BstX2I	RGATCY	2 cut(s)	888, 1261
BstXI	CCANNNNNNTGG	1 cut(s)	1449
BstYI	RGATCY	2 cut(s)	888, 1261
BstZ17I	GTATAC	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	1193
BsuRI	GGCC	5 cut(s)	501, 723, 1191, 1528, 1536
BtsIMutI	CAGTG	2 cut(s)	200, 640
Cac8I	GCNNGC	2 cut(s)	661, 1060
CaiI	CAGNNNCTG	1 cut(s)	547
CfoI	GCGC	1 cut(s)	1519
Cfr13I	GGNCC	3 cut(s)	50, 1534, 1540
Csp6I	GTAC	2 cut(s)	306, 1026
CviAII	CATG	4 cut(s)	503, 878, 1088, 1427
CviQI	GTAC	2 cut(s)	306, 1026
DdeI	CTNAG	7 cut(s)	819, 999, 1022, 1193, 1265, 1299, 1578
DpnI	GATC	8 cut(s)	15, 204, 375, 876, 890, 990, 1263, 1458
DpnII	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
DraI	TTTAAA	1 cut(s)	970
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	2 cut(s)	499, 721
Eam1104I	CTCTTC	2 cut(s)	144, 835
EarI	CTCTTC	2 cut(s)	144, 835
Eco130I	CCWWGG	2 cut(s)	561, 1332
Eco32I	GATATC	1 cut(s)	870
Eco47I	GGWCC	2 cut(s)	50, 1540
Eco57I	CTGAAG	2 cut(s)	5, 887
Eco81I	CCTNAGG	1 cut(s)	1193
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	1534
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	4 cut(s)	546, 654, 1528, 1536
EcoRV	GATATC	1 cut(s)	870
EcoT14I	CCWWGG	2 cut(s)	561, 1332
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	2 cut(s)	561, 1332
FaeI	CATG	4 cut(s)	506, 881, 1091, 1430
FaqI	GGGAC	2 cut(s)	434, 1129
FatI	CATG	4 cut(s)	502, 877, 1087, 1426
FbaI	TGATCA	2 cut(s)	874, 1456
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	441, 1155, 1210, 1283
Fsp4HI	GCNGC	4 cut(s)	441, 1155, 1210, 1283
FspBI	CTAG	3 cut(s)	1379, 1383, 1508
GlaI	GCGC	1 cut(s)	1518
GluI	GCNGC	4 cut(s)	441, 1155, 1210, 1283
HaeIII	GGCC	5 cut(s)	501, 723, 1191, 1528, 1536
HapII	CCGG	3 cut(s)	379, 425, 1525
HhaI	GCGC	1 cut(s)	1519
Hin1II	CATG	4 cut(s)	506, 881, 1091, 1430
Hin6I	GCGC	1 cut(s)	1517
HinP1I	GCGC	1 cut(s)	1517
HincII	GTYRAC	1 cut(s)	1413
HindII	GTYRAC	1 cut(s)	1413
HindIII	AAGCTT	1 cut(s)	1325
HinfI	GANTC	9 cut(s)	75, 176, 181, 455, 1255, 1271, 1420, 1511, 1589
HpaII	CCGG	3 cut(s)	379, 425, 1525
HphI	GGTGA	5 cut(s)	38, 422, 621, 1078, 1483
Hpy166II	GTNNAC	4 cut(s)	317, 413, 1074, 1413
Hpy188I	TCNGA	7 cut(s)	148, 207, 227, 247, 703, 874, 1161
Hpy188III	TCNNGA	4 cut(s)	511, 1259, 1359, 1508
Hpy8I	GTNNAC	4 cut(s)	317, 413, 1074, 1413
Hpy99I	CGWCG	2 cut(s)	14, 43
HpyAV	CCTTC	4 cut(s)	261, 290, 708, 1106
HpyCH4III	ACNGT	6 cut(s)	10, 288, 417, 475, 1030, 1066
HpyCH4V	TGCA	8 cut(s)	99, 284, 404, 482, 554, 752, 930, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1018, 1442, 1525, 1570
HpyF3I	CTNAG	7 cut(s)	819, 999, 1022, 1193, 1265, 1299, 1578
Hsp92II	CATG	4 cut(s)	506, 881, 1091, 1430
HspAI	GCGC	1 cut(s)	1517
Ksp22I	TGATCA	2 cut(s)	874, 1456
Kzo9I	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
LguI	GCTCTTC	1 cut(s)	835
LmnI	GCTCC	3 cut(s)	427, 1524, 1561
Lsp1109I	GCAGC	3 cut(s)	1166, 1196, 1269
LweI	GCATC	5 cut(s)	124, 491, 541, 723, 1181
MaeI	CTAG	3 cut(s)	1379, 1383, 1508
MaeIII	GTNAC	4 cut(s)	4, 26, 235, 387
MalI	GATC	8 cut(s)	15, 204, 375, 876, 890, 990, 1263, 1458
MboI	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
MflI	RGATCY	2 cut(s)	888, 1261
MlsI	TGGCCA	2 cut(s)	501, 723
MluCI	AATT	6 cut(s)	31, 100, 249, 566, 1006, 1389
MluNI	TGGCCA	2 cut(s)	501, 723
MlyI	GAGTC	1 cut(s)	1505
MmeI	TCCRAC	3 cut(s)	106, 786, 1108
Mox20I	TGGCCA	2 cut(s)	501, 723
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	1143
MscI	TGGCCA	2 cut(s)	501, 723
MseI	TTAA	7 cut(s)	252, 291, 765, 795, 969, 1323, 1594
Msp20I	TGGCCA	2 cut(s)	501, 723
MspA1I	CMGCKG	1 cut(s)	1445
MspI	CCGG	3 cut(s)	379, 425, 1525
MspR9I	CCNGG	6 cut(s)	380, 425, 548, 656, 1530, 1538
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	4 cut(s)	548, 656, 1530, 1538
MwoI	GCNNNNNNNGC	4 cut(s)	1018, 1442, 1525, 1570
NciI	CCSGG	2 cut(s)	380, 425
NdeII	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
NlaIII	CATG	4 cut(s)	506, 881, 1091, 1430
NlaIV	GGNNCC	2 cut(s)	1535, 1557
NmuCI	GTSAC	2 cut(s)	26, 235
NsiI	ATGCAT	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	1110
PciSI	GCTCTTC	1 cut(s)	835
PctI	GAATGC	1 cut(s)	983
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	8 cut(s)	75, 176, 181, 455, 1255, 1271, 1420, 1589
PflMI	CCANNNNNTGG	2 cut(s)	547, 1549
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	442, 1156, 1211, 1284
PleI	GAGTC	1 cut(s)	1505
PpsI	GAGTC	1 cut(s)	1505
PshAI	GACNNNNGTC	1 cut(s)	55
Psp6I	CCWGG	4 cut(s)	546, 654, 1528, 1536
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	4 cut(s)	546, 654, 1528, 1536
PspN4I	GGNNCC	2 cut(s)	1535, 1557
PspPI	GGNCC	3 cut(s)	50, 1534, 1540
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	888, 1261
PvuII	CAGCTG	1 cut(s)	1445
RsaI	GTAC	2 cut(s)	307, 1027
RsaNI	GTAC	2 cut(s)	306, 1026
SapI	GCTCTTC	1 cut(s)	835
SaqAI	TTAA	7 cut(s)	252, 291, 765, 795, 969, 1323, 1594
SatI	GCNGC	4 cut(s)	441, 1155, 1210, 1283
Sau3AI	GATC	8 cut(s)	13, 202, 373, 874, 888, 988, 1261, 1456
Sau96I	GGNCC	3 cut(s)	50, 1534, 1540
ScaI	AGTACT	1 cut(s)	1027
SchI	GAGTC	1 cut(s)	1505
ScrFI	CCNGG	6 cut(s)	380, 425, 548, 656, 1530, 1538
SfaNI	GCATC	5 cut(s)	124, 491, 541, 723, 1181
SfcI	CTRYAG	1 cut(s)	1275
SfuI	TTCGAA	1 cut(s)	1110
SinI	GGWCC	2 cut(s)	50, 1540
Sse9I	AATT	6 cut(s)	31, 100, 249, 566, 1006, 1389
SsiI	CCGC	2 cut(s)	48, 440
SspMI	CTAG	3 cut(s)	1379, 1383, 1508
StyD4I	CCNGG	6 cut(s)	378, 423, 546, 654, 1528, 1536
StyI	CCWWGG	2 cut(s)	561, 1332
TaaI	ACNGT	6 cut(s)	10, 288, 417, 475, 1030, 1066
TaqI	TCGA	6 cut(s)	12, 179, 527, 687, 987, 1110
TasI	AATT	6 cut(s)	31, 100, 249, 566, 1006, 1389
TatI	WGTACW	1 cut(s)	1025
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	8 cut(s)	75, 176, 181, 455, 1255, 1271, 1420, 1589
Tru1I	TTAA	7 cut(s)	252, 291, 765, 795, 969, 1323, 1594
Tru9I	TTAA	7 cut(s)	252, 291, 765, 795, 969, 1323, 1594
TscAI	CASTG	2 cut(s)	200, 640
TseFI	GTSAC	2 cut(s)	26, 235
TseI	GCWGC	3 cut(s)	1154, 1209, 1282
Tsp45I	GTSAC	2 cut(s)	26, 235
TspDTI	ATGAA	5 cut(s)	703, 1181, 1247, 1298, 1307
TspGWI	ACGGA	2 cut(s)	323, 1548
TspRI	CASTG	2 cut(s)	200, 640
Van91I	CCANNNNNTGG	2 cut(s)	547, 1549
VpaK11BI	GGWCC	2 cut(s)	50, 1540
XapI	RAATTY	1 cut(s)	1006
XbaI	TCTAGA	1 cut(s)	1507
XmiI	GTMKAC	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	3 cut(s)	1379, 1383, 1508
ZrmI	AGTACT	1 cut(s)	1027
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.