Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011118

Physical Location & Seq

Genomic Coordinates Reverse (-)

23614125 .. 23615405

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCTTTGGGTGGGAGTTGGAGCAGGTATAGCTTCTGTTGCCATTCTTGCCATTGTCATTTACTGTTTCTGCAATAAACTGAGAGGAAAATCAAGTGACACAAAAAACACCCCCGCTCGGTGGAGGCCGTTATTCCTTAATGGCTCCGTTTTAAACAGCAATGTCAATTCCAAGGGAGCAGGAAGCCAGAATCCTTCTGGTTGTGTGGCCTCTATCAGAGCTGGCAAGCGGTTCATGTTACCAGAGATTCGCGCAGCAACGAATAATTTTGATGACAGTTTAGTGATTGGACTTGGAGGCTTTGGTAAGGTGTACAAAGGGGAGACTGATGATGGCACTCTCGTAGCGATCAAGCGAGCCAACCCCCAATCTCAGCAAGGACTGGCAGAATTTGAGACGGAGATTGAGATGCTTTCGAAGCTCAGGCATAGGCATTTGGTGTCATTGATTGGATTCTGTGAAGAACAAAATGAGATGATCTTGGTTTATGAGTACATGGCAAATGGGACCCTTAGAAGCCATCTCTTTGGGAGTGATCTCCCACCGCTGACTTTTAAGCAACGACTAGAAGCGTGCATTGGTGCTGCACGAGGACTCCATTACCTTCATACTGGAGCAGATAGGGGAATAATTCACAGGGATGTTAAGACAACCAACATACTGCTAGATGAAAATTTTGTCGCAAAAATGTCCGACTTTGGATTGTCTAAAACAGGTCCGGCTTTGGACCACACCCATGTTAGTACTGCAGTTAAAGGAAGCTTCGGATATCTTGACCCTGAATATTATCGACGACAGCAGTTGACAGAGAAATCTGATGTCTACTCGTTTGGTGTAGTGCTGTTTGAAGCTGTTTGTGCTAGGCCTGTTATAAACCCAACCTTGCCAAAAGATCAGATCAATCTTGCAGAGTGGGCAATGATGTGGCAACGAAAGAGGTCCCTTGAGACCATCATTGACCGTCGTCTTGAAGGAAATTATTGTCCCGAGGCACTGAAGAAGTTTGGGGAGATAGCGGAGAAATGTCTCGCTGATGAGGGGAAGAGCCGGCCAACAATGGGGGAAGTTCTGTGGCACTTGGAGTATGCCTTGCAACTCCACGAACCGTGGATGCGTACCAATGCTGGAGACAATTCTTTTACAAGTAGTCAGGTTTTCGGGGGAGAAGCAGAAGAGAAGGAAGGAGCTCCGAGTTTTGATGAAGAGGCCGGTTGCAGCGGAAAGTCTACCACAAGAGAATCCGATGAATCTGCAGACGGAGGTGAGAGGCATGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

427

Amino Acids

47.07

Weight (kDa)

5.94

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	95 - 358	4.8e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	95 - 359	7.3e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30570
fragaria_vesca	FvH4_3g10180
malus_domestica	MD01G1121700.v1.1 MD10G1252700.v1.1
prunus_persica	Prupe.4G090800_v2.0.a1
pyrus_communis	pycom05g25440 pycom10g20840
rosa_chinensis	RchiOBHm_Chr5g0016361
rosa_laevigata	RLG00000032246
rosa_multiflora	Rmu_sc0001235.1_g000034 Rmu_sc0012840.1_g000004 Rmu_sc0023137.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060500 Rroxscaffold_1G00060510
rosa_rugosa	Rorug05G0031900
rosa_samantha	Rh5AG125400 Rh5BG124400 Rh5CG136600 Rh5DG124100
rosa_wichuraiana	Rw5G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	872
Acc36I	ACCTGC	1 cut(s)	14
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	2 cut(s)	822, 1226
AccII	CGCG	1 cut(s)	252
AciI	CCGC	5 cut(s)	114, 229, 545, 1016, 1218
AcoI	YGGCCR	1 cut(s)	1049
AcsI	RAATTY	2 cut(s)	389, 673
AcuI	CTGAAG	1 cut(s)	1016
AfaI	GTAC	4 cut(s)	314, 494, 745, 1117
AfiI	CCNNNNNNNGG	3 cut(s)	117, 120, 1058
AgsI	TTSAA	2 cut(s)	848, 971
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AluBI	AGCT	6 cut(s)	32, 221, 421, 762, 851, 1187
AluI	AGCT	6 cut(s)	32, 221, 421, 762, 851, 1187
Alw21I	GWGCWC	1 cut(s)	1189
Alw26I	GTCTC	5 cut(s)	317, 389, 941, 1031, 1122
Ama87I	CYCGRG	1 cut(s)	986
AoxI	GGCC	5 cut(s)	125, 207, 863, 1049, 1206
ApeKI	GCWGC	3 cut(s)	254, 584, 1215
ApoI	RAATTY	2 cut(s)	389, 673
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	4 cut(s)	507, 716, 727, 939
AsuHPI	GGTGA	1 cut(s)	1274
AsuII	TTCGAA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	4 cut(s)	507, 716, 727, 939
BanII	GRGCYC	1 cut(s)	1189
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	1189
BbvI	GCAGC	3 cut(s)	266, 571, 1227
BccI	CCATC	3 cut(s)	326, 528, 959
BceAI	ACGGC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	1232, 1266
BcoDI	GTCTC	5 cut(s)	317, 389, 941, 1031, 1122
BfaI	CTAG	3 cut(s)	566, 665, 861
BfmI	CTRYAG	2 cut(s)	747, 1251
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	3 cut(s)	255, 585, 1216
BlsI	GCNGC	3 cut(s)	256, 586, 1217
BmcAI	AGTACT	1 cut(s)	745
Bme18I	GGWCC	4 cut(s)	507, 716, 727, 939
BmeT110I	CYCGRG	1 cut(s)	986
BmgT120I	GGNCC	4 cut(s)	507, 716, 727, 939
BmiI	GGNNCC	4 cut(s)	145, 508, 509, 941
BmsI	GCATC	2 cut(s)	399, 1101
BoxI	GACNNNNGTC	1 cut(s)	963
BpmI	CTGGAG	2 cut(s)	633, 1146
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	941
BsaJI	CCNNGG	3 cut(s)	171, 987, 1106
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 120, 1058
Bse118I	RCCGGY	2 cut(s)	1047, 1208
Bse1I	ACTGG	2 cut(s)	387, 616
Bse3DI	GCAATG	2 cut(s)	166, 924
BseDI	CCNNGG	3 cut(s)	171, 987, 1106
BseGI	GGATG	2 cut(s)	646, 1116
BseLI	CCNNNNNNNGG	3 cut(s)	117, 120, 1058
BseMI	GCAATG	2 cut(s)	166, 924
BseMII	CTCAG	3 cut(s)	71, 386, 436
BseNI	ACTGG	2 cut(s)	387, 616
BseXI	GCAGC	3 cut(s)	266, 571, 1227
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	5 cut(s)	127, 209, 865, 1051, 1208
BsiHKAI	GWGCWC	1 cut(s)	1189
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	3 cut(s)	719, 1048, 1209
BslFI	GGGAC	3 cut(s)	520, 925, 969
BslI	CCNNNNNNNGG	3 cut(s)	117, 120, 1058
BsmAI	GTCTC	5 cut(s)	317, 389, 941, 1031, 1122
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	3 cut(s)	520, 925, 969
BsnI	GGCC	5 cut(s)	127, 209, 865, 1051, 1208
Bso31I	GGTCTC	1 cut(s)	941
BsoBI	CYCGRG	1 cut(s)	986
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	1189
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	5 cut(s)	348, 477, 535, 892, 897
BspACI	CCGC	5 cut(s)	114, 229, 545, 1016, 1218
BspANI	GGCC	5 cut(s)	127, 209, 865, 1051, 1208
BspCNI	CTCAG	3 cut(s)	72, 385, 435
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	145, 508, 509, 941
BspMAI	CTGCAG	2 cut(s)	751, 1255
BspMI	ACCTGC	1 cut(s)	14
BspQI	GCTCTTC	1 cut(s)	1037
BspT104I	TTCGAA	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	941
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	166, 924
BsrFI	RCCGGY	2 cut(s)	1047, 1208
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	387, 616
BssAI	RCCGGY	2 cut(s)	1047, 1208
BssECI	CCNNGG	3 cut(s)	171, 987, 1106
BssMI	GATC	5 cut(s)	348, 477, 535, 892, 897
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	588
Bst4CI	ACNGT	4 cut(s)	65, 278, 962, 1107
Bst6I	CTCTTC	3 cut(s)	1037, 1167, 1197
BstAUI	TGTACA	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	5 cut(s)	223, 227, 357, 574, 1049
BstDEI	CTNAG	4 cut(s)	80, 372, 422, 512
BstDSI	CCRYGG	1 cut(s)	1106
BstF5I	GGATG	2 cut(s)	646, 1116
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	5 cut(s)	351, 480, 538, 895, 900
BstMAI	GTCTC	5 cut(s)	317, 389, 941, 1031, 1122
BstMBI	GATC	5 cut(s)	348, 477, 535, 892, 897
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 38, 47, 418, 857, 914
BstPAI	GACNNNNGTC	1 cut(s)	963
BstSFI	CTRYAG	2 cut(s)	747, 1251
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	266, 571, 1227
BstXI	CCANNNNNNTGG	1 cut(s)	527
BsuRI	GGCC	5 cut(s)	127, 209, 865, 1051, 1208
BtgI	CCRYGG	1 cut(s)	1106
BtsCI	GGATG	2 cut(s)	646, 1116
BtsIMutI	CAGTG	1 cut(s)	992
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	5 cut(s)	223, 227, 357, 574, 1049
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	2 cut(s)	1047, 1208
Cfr13I	GGNCC	4 cut(s)	507, 716, 727, 939
Csp6I	GTAC	4 cut(s)	313, 493, 744, 1116
CviAII	CATG	4 cut(s)	235, 496, 737, 1271
CviQI	GTAC	4 cut(s)	313, 493, 744, 1116
DdeI	CTNAG	4 cut(s)	80, 372, 422, 512
DpnI	GATC	5 cut(s)	350, 479, 537, 894, 899
DpnII	GATC	5 cut(s)	348, 477, 535, 892, 897
DraI	TTTAAA	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	1049
Eam1104I	CTCTTC	3 cut(s)	1037, 1167, 1197
EarI	CTCTTC	3 cut(s)	1037, 1167, 1197
Ecl136II	GAGCTC	1 cut(s)	1187
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	1189
Eco31I	GGTCTC	1 cut(s)	941
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	4 cut(s)	507, 716, 727, 939
Eco53kI	GAGCTC	1 cut(s)	1187
Eco57I	CTGAAG	1 cut(s)	1016
Eco88I	CYCGRG	1 cut(s)	986
EcoICRI	GAGCTC	1 cut(s)	1187
EcoO109I	RGGNCCY	2 cut(s)	507, 939
EcoRV	GATATC	1 cut(s)	770
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	1189
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	4 cut(s)	238, 499, 740, 1274
FaqI	GGGAC	3 cut(s)	520, 925, 969
FatI	CATG	4 cut(s)	234, 495, 736, 1270
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	2 cut(s)	822, 1226
Fnu4HI	GCNGC	3 cut(s)	255, 585, 1216
FokI	GGATG	2 cut(s)	653, 1123
FriOI	GRGCYC	1 cut(s)	1189
Fsp4HI	GCNGC	3 cut(s)	255, 585, 1216
FspBI	CTAG	3 cut(s)	566, 665, 861
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	255, 585, 1216
GsuI	CTGGAG	2 cut(s)	633, 1146
HaeIII	GGCC	5 cut(s)	127, 209, 865, 1051, 1208
HapII	CCGG	3 cut(s)	719, 1048, 1209
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	238, 499, 740, 1274
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	6 cut(s)	190, 247, 453, 594, 1238, 1247
HpaII	CCGG	3 cut(s)	719, 1048, 1209
HphI	GGTGA	1 cut(s)	1274
Hpy166II	GTNNAC	4 cut(s)	313, 804, 823, 1227
Hpy188I	TCNGA	7 cut(s)	218, 694, 767, 817, 897, 1191, 1243
Hpy188III	TCNNGA	3 cut(s)	773, 968, 986
Hpy8I	GTNNAC	4 cut(s)	313, 804, 823, 1227
Hpy99I	CGWCG	2 cut(s)	795, 966
HpyAV	CCTTC	5 cut(s)	204, 614, 965, 1171, 1175
HpyCH4III	ACNGT	4 cut(s)	65, 278, 962, 1107
HpyCH4V	TGCA	8 cut(s)	72, 576, 587, 749, 908, 1093, 1215, 1253
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 38, 47, 418, 857, 914
HpyF3I	CTNAG	4 cut(s)	80, 372, 422, 512
Hsp92II	CATG	4 cut(s)	238, 499, 740, 1274
HspAI	GCGC	1 cut(s)	252
KflI	GGGWCCC	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	1047
KroNI	GCCGGC	1 cut(s)	1049
Kzo9I	GATC	5 cut(s)	348, 477, 535, 892, 897
LguI	GCTCTTC	1 cut(s)	1037
LmnI	GCTCC	6 cut(s)	20, 149, 176, 614, 1184, 1192
Lsp1109I	GCAGC	3 cut(s)	266, 571, 1227
LweI	GCATC	2 cut(s)	399, 1101
MaeI	CTAG	3 cut(s)	566, 665, 861
MaeIII	GTNAC	2 cut(s)	95, 237
MalI	GATC	5 cut(s)	350, 479, 537, 894, 899
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	5 cut(s)	348, 477, 535, 892, 897
MboII	GAAGA	5 cut(s)	473, 1009, 1054, 1184, 1214
MhlI	GDGCHC	1 cut(s)	1189
MluCI	AATT	8 cut(s)	166, 265, 389, 630, 673, 976, 1132, 1276
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	1 cut(s)	717
MroNI	GCCGGC	1 cut(s)	1047
MseI	TTAA	5 cut(s)	138, 152, 555, 645, 753
MslI	CAYNNNNRTG	2 cut(s)	639, 735
MspA1I	CMGCKG	2 cut(s)	547, 1218
MspI	CCGG	3 cut(s)	719, 1048, 1209
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	6 cut(s)	29, 38, 47, 418, 857, 914
NaeI	GCCGGC	1 cut(s)	1049
NdeII	GATC	5 cut(s)	348, 477, 535, 892, 897
NgoMIV	GCCGGC	1 cut(s)	1047
NlaIII	CATG	4 cut(s)	238, 499, 740, 1274
NlaIV	GGNNCC	4 cut(s)	145, 508, 509, 941
NmuCI	GTSAC	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	1037
PdiI	GCCGGC	1 cut(s)	1049
PfeI	GAWTC	5 cut(s)	190, 247, 453, 1238, 1247
PkrI	GCNGC	3 cut(s)	256, 586, 1217
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PpuMI	RGGWCCY	2 cut(s)	507, 939
PshAI	GACNNNNGTC	1 cut(s)	963
PsiI	TTATAA	1 cut(s)	872
Psp124BI	GAGCTC	1 cut(s)	1189
Psp5II	RGGWCCY	2 cut(s)	507, 939
PspN4I	GGNNCC	4 cut(s)	145, 508, 509, 941
PspPI	GGNCC	4 cut(s)	507, 716, 727, 939
PspPPI	RGGWCCY	2 cut(s)	507, 939
PstI	CTGCAG	2 cut(s)	751, 1255
RsaI	GTAC	4 cut(s)	314, 494, 745, 1117
RsaNI	GTAC	4 cut(s)	313, 493, 744, 1116
RseI	CAYNNNNRTG	2 cut(s)	639, 735
SacI	GAGCTC	1 cut(s)	1189
SapI	GCTCTTC	1 cut(s)	1037
SaqAI	TTAA	5 cut(s)	138, 152, 555, 645, 753
SatI	GCNGC	3 cut(s)	255, 585, 1216
Sau3AI	GATC	5 cut(s)	348, 477, 535, 892, 897
Sau96I	GGNCC	4 cut(s)	507, 716, 727, 939
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	588
SduI	GDGCHC	1 cut(s)	1189
SfaNI	GCATC	2 cut(s)	399, 1101
SfcI	CTRYAG	2 cut(s)	747, 1251
SfuI	TTCGAA	1 cut(s)	416
SinI	GGWCC	4 cut(s)	507, 716, 727, 939
SmiMI	CAYNNNNRTG	2 cut(s)	639, 735
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	8 cut(s)	166, 265, 389, 630, 673, 976, 1132, 1276
SseBI	AGGCCT	1 cut(s)	865
SsiI	CCGC	5 cut(s)	114, 229, 545, 1016, 1218
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	3 cut(s)	566, 665, 861
SstI	GAGCTC	1 cut(s)	1189
StuI	AGGCCT	1 cut(s)	865
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	4 cut(s)	65, 278, 962, 1107
TaqI	TCGA	2 cut(s)	416, 790
TasI	AATT	8 cut(s)	166, 265, 389, 630, 673, 976, 1132, 1276
TatI	WGTACW	3 cut(s)	312, 492, 743
TfiI	GAWTC	5 cut(s)	190, 247, 453, 1238, 1247
Tru1I	TTAA	5 cut(s)	138, 152, 555, 645, 753
Tru9I	TTAA	5 cut(s)	138, 152, 555, 645, 753
TscAI	CASTG	1 cut(s)	999
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	254, 584, 1215
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	5 cut(s)	223, 596, 684, 1215, 1260
TspGWI	ACGGA	3 cut(s)	136, 413, 1272
TspRI	CASTG	1 cut(s)	999
VpaK11BI	GGWCC	4 cut(s)	507, 716, 727, 939
XapI	RAATTY	2 cut(s)	389, 673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	2 cut(s)	822, 1226
XspI	CTAG	3 cut(s)	566, 665, 861
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.