Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023137.1

Orthogroup ID

OG0011118

Physical Location & Seq

Genomic Coordinates Reverse (-)

32059 .. 33033

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023137.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggtttataaaggagtgctagaaaatgggagtgtagttgcagtaaagcgcggaaatccacgttctcaacaaggactcacagaattccggacagaaattgagatgctgtcaaagaagaggcatagacatttggtttctcttataggctactgtgaggaacttaatgagatgatccttgtttatgagttcatggctggtggtcctcttcgaaaacatttgtatggctcgaattttcctccgctgacatggaaacaaaggcttgaaatctgcataggagctgcaaaggggctgcattaccttcacacaggagcagcagagactataattcaccgagatgtcaaaacaaccaacatacttcttgatgagaatctgactgcgaaagtagctgatttcggattgtcaaagttaggccctactttggatcaaacacatgtaagtactgcagtgaaggggagctttggttatcttgatccagattattatcgtcggcagcaactcactgagaagtcagatgtatactcatttggagtagttttattagaggtattatgtgctcggcctgctataaacccttcactcccgagagaacaggttaatatagctgaatgggccatgaactttcaaaagaaaggaagattggagaagattatggaccggaatcttgtagggcatgtcaatcttgaatcactgagaaaatttggtgaaacagcagagaagtgtttgcttgaatatggggttgagagaccaacaatgggagatgtgttgtggaatttggagtatgctcttcaactacaagaggcttctatacaattcactgcttcagctgcgaatagtgcaaattacatttcagagattccagaatggcttccccaaattgaaattggtaatggtgatggtcatgaccacagtgaccaagaatcagatacaacatcaagtgcagtgttttcagagttagaggatccaagaggaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

324

Amino Acids

36.43

Weight (kDa)

5.74

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30570
fragaria_vesca	FvH4_3g10180
malus_domestica	MD01G1121700.v1.1 MD10G1252700.v1.1
prunus_persica	Prupe.4G090800_v2.0.a1
pyrus_communis	pycom05g25440 pycom10g20840
rosa_chinensis	RchiOBHm_Chr5g0016361
rosa_laevigata	RLG00000032246
rosa_multiflora	Rmu_sc0001235.1_g000034 Rmu_sc0012840.1_g000004 Rmu_sc0023137.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060500 Rroxscaffold_1G00060510
rosa_rugosa	Rorug05G0031900
rosa_samantha	Rh5AG125400 Rh5BG124400 Rh5CG136600 Rh5DG124100
rosa_wichuraiana	Rw5G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	87
AciI	CCGC	2 cut(s)	51, 239
AclWI	GGATC	5 cut(s)	166, 429, 464, 953, 966
AcsI	RAATTY	4 cut(s)	83, 229, 695, 769
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	418, 752
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	6 cut(s)	263, 623, 683, 728, 788, 878
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	278, 386, 456, 602, 824
AluI	AGCT	5 cut(s)	278, 386, 456, 602, 824
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	311, 736
AlwI	GGATC	5 cut(s)	166, 429, 464, 953, 966
Ama87I	CYCGRG	1 cut(s)	580
Aor13HI	TCCGGA	1 cut(s)	87
AoxI	GGCC	3 cut(s)	409, 557, 609
ApeKI	GCWGC	5 cut(s)	278, 289, 311, 490, 824
ApoI	RAATTY	4 cut(s)	83, 229, 695, 769
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	4 cut(s)	200, 410, 609, 652
AsuHPI	GGTGA	3 cut(s)	320, 713, 902
AsuII	TTCGAA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	2 cut(s)	200, 652
BamHI	GGATCC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	5 cut(s)	265, 276, 323, 502, 811
BccI	CCATC	1 cut(s)	887
BcoDI	GTCTC	2 cut(s)	311, 736
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	5 cut(s)	279, 290, 312, 491, 825
BlsI	GCNGC	5 cut(s)	280, 291, 313, 492, 826
BmcAI	AGTACT	1 cut(s)	439
Bme18I	GGWCC	2 cut(s)	200, 652
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	4 cut(s)	200, 410, 609, 652
BmiI	GGNNCC	1 cut(s)	960
BmsI	GCATC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	208
BsaBI	GATNNNNATC	2 cut(s)	366, 480
BsaI	GGTCTC	1 cut(s)	736
BsaWI	WCCGGW	2 cut(s)	87, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 752
Bse8I	GATNNNNATC	2 cut(s)	366, 480
BseAI	TCCGGA	1 cut(s)	87
BseJI	GATNNNNATC	2 cut(s)	366, 480
BseLI	CCNNNNNNNGG	2 cut(s)	418, 752
BseMII	CTCAG	2 cut(s)	492, 680
BseXI	GCAGC	5 cut(s)	265, 276, 323, 502, 811
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	411, 559, 611
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	2 cut(s)	88, 655
BslI	CCNNNNNNNGG	2 cut(s)	418, 752
BsmAI	GTCTC	2 cut(s)	311, 736
BsnI	GGCC	3 cut(s)	411, 559, 611
Bso31I	GGTCTC	1 cut(s)	736
BsoBI	CYCGRG	1 cut(s)	580
Bsp119I	TTCGAA	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp13I	TCCGGA	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	171, 421, 469, 958
BspACI	CCGC	2 cut(s)	51, 239
BspANI	GGCC	3 cut(s)	411, 559, 611
BspCNI	CTCAG	2 cut(s)	493, 681
BspEI	TCCGGA	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	5 cut(s)	166, 429, 464, 953, 966
BspQI	GCTCTTC	1 cut(s)	789
BspT104I	TTCGAA	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	736
BssMI	GATC	4 cut(s)	171, 421, 469, 958
BssNAI	GTATAC	1 cut(s)	517
Bst1107I	GTATAC	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	152, 908
Bst6I	CTCTTC	3 cut(s)	110, 210, 789
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	501, 689
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	174, 424, 472, 961
BstMAI	GTCTC	2 cut(s)	311, 736
BstMBI	GATC	4 cut(s)	171, 421, 469, 958
BstMWI	GCNNNNNNNGC	5 cut(s)	383, 560, 608, 824, 833
BstNSI	RCATGY	2 cut(s)	434, 674
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	5 cut(s)	265, 276, 323, 502, 811
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BstZ17I	GTATAC	1 cut(s)	517
BsuRI	GGCC	3 cut(s)	411, 559, 611
BtsI	GCAGTG	3 cut(s)	450, 813, 945
BtsIMutI	CAGTG	6 cut(s)	450, 498, 686, 813, 913, 945
Cac8I	GCNNGC	1 cut(s)	561
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	200, 410, 609, 652
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	6 cut(s)	190, 246, 431, 613, 671, 899
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	501, 689
DpnI	GATC	4 cut(s)	173, 423, 471, 960
DpnII	GATC	4 cut(s)	171, 421, 469, 958
Eam1104I	CTCTTC	3 cut(s)	110, 210, 789
EarI	CTCTTC	3 cut(s)	110, 210, 789
Eco31I	GGTCTC	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	200, 652
Eco57I	CTGAAG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	83
FaeI	CATG	6 cut(s)	193, 249, 434, 616, 674, 902
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	6 cut(s)	189, 245, 430, 612, 670, 898
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	5 cut(s)	279, 290, 312, 491, 825
Fsp4HI	GCNGC	5 cut(s)	279, 290, 312, 491, 825
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	5 cut(s)	279, 290, 312, 491, 825
HaeIII	GGCC	3 cut(s)	411, 559, 611
HapII	CCGG	2 cut(s)	88, 655
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	193, 249, 434, 616, 674, 902
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	6 cut(s)	75, 367, 658, 683, 853, 917
HpaII	CCGG	2 cut(s)	88, 655
HphI	GGTGA	3 cut(s)	320, 713, 902
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	6 cut(s)	372, 395, 511, 850, 922, 949
Hpy188III	TCNNGA	8 cut(s)	88, 359, 467, 473, 580, 680, 857, 899
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	308, 442, 582
HpyCH4III	ACNGT	2 cut(s)	152, 908
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	7 cut(s)	41, 270, 281, 292, 443, 836, 938
HpyF10VI	GCNNNNNNNGC	5 cut(s)	383, 560, 608, 824, 833
HpyF3I	CTNAG	2 cut(s)	501, 689
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	6 cut(s)	193, 249, 434, 616, 674, 902
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	171, 421, 469, 958
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	3 cut(s)	275, 308, 453
LpnPI	CCDG	8 cut(s)	101, 180, 291, 486, 573, 575, 668, 870
Lsp1109I	GCAGC	5 cut(s)	265, 276, 323, 502, 811
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	4 cut(s)	173, 423, 471, 960
MboI	GATC	4 cut(s)	171, 421, 469, 958
MboII	GAAGA	5 cut(s)	127, 197, 645, 655, 776
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	8 cut(s)	111, 148, 213, 246, 535, 790, 949, 959
MroI	TCCGGA	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	2 cut(s)	162, 594
MslI	CAYNNNNRTG	2 cut(s)	219, 333
MspA1I	CMGCKG	2 cut(s)	241, 824
MspI	CCGG	2 cut(s)	88, 655
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	5 cut(s)	383, 560, 608, 824, 833
NdeII	GATC	4 cut(s)	171, 421, 469, 958
NlaIII	CATG	6 cut(s)	193, 249, 434, 616, 674, 902
NlaIV	GGNNCC	1 cut(s)	960
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	908
NspI	RCATGY	2 cut(s)	434, 674
NspV	TTCGAA	1 cut(s)	208
PagI	TCATGA	1 cut(s)	898
PciI	ACATGT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	5 cut(s)	367, 658, 683, 853, 917
PkrI	GCNGC	5 cut(s)	280, 291, 313, 492, 826
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	960
PspPI	GGNCC	4 cut(s)	200, 410, 609, 652
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	2 cut(s)	219, 333
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	2 cut(s)	162, 594
SatI	GCNGC	5 cut(s)	279, 290, 312, 491, 825
Sau3AI	GATC	4 cut(s)	171, 421, 469, 958
Sau96I	GGNCC	4 cut(s)	200, 410, 609, 652
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	9 cut(s)	64, 280, 300, 388, 458, 546, 594, 604, 826
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	441
SfuI	TTCGAA	1 cut(s)	208
SinI	GGWCC	2 cut(s)	200, 652
SmiMI	CAYNNNNRTG	2 cut(s)	219, 333
SsiI	CCGC	2 cut(s)	51, 239
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	152, 908
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	208, 227
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	5 cut(s)	367, 658, 683, 853, 917
Tru1I	TTAA	2 cut(s)	162, 594
Tru9I	TTAA	2 cut(s)	162, 594
TscAI	CASTG	6 cut(s)	450, 505, 693, 820, 913, 945
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	5 cut(s)	278, 289, 311, 490, 824
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	2 cut(s)	178, 629
TspRI	CASTG	6 cut(s)	450, 505, 693, 820, 913, 945
VpaK11BI	GGWCC	2 cut(s)	200, 652
XapI	RAATTY	4 cut(s)	83, 229, 695, 769
XceI	RCATGY	2 cut(s)	434, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.