Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011118

Physical Location & Seq

Genomic Coordinates Reverse (-)

82714155 .. 82714751

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCCGACTTTGGACTGTCGAAAACTGGTCCTGCTTTGGACCATACCCATGTTAGTACTGCAGTTAAAGGAAGCTTTGGATATCTAGATCCTGAGTATTTTCGACGACAGCAGCTGACAGAGAAATCGGATGTCTACTCTTTTGGTGTAGTGTTGTTTGAAGCTGTTTGTTCTCGGCCAGTCATAAACCCAACCTTGCCAAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAGAGGCAGAGGTCACTTGAAACTATCATCGATCCTCGTCTTGAAGGAAACTACTGTCCTGAGTCCTTGAAGAAGTTTGGGGACATAGCAGAGAAATGCCTTGCTGATGAGGGGAAGAGCCGGCCAACGATGGGGGAAGTTTTGTGGCACTTGGAGTATGTCTTGCAACTCCACGAAGCGTGGATCCGGAAAAATGCAGGAGAGAATTCTTTCACAAGTAGTCAAGGATTTGGGGGTTTAGCTGTGGATGAAGCAGAAGAGAGGAAAGCTACCAGTTTCGATGAAGAGACTGGTTTCAGCAGAGAGTCTACCAGTAGAGGACTTGATGAATCTACTACAGAAGGCGGAAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

198

Amino Acids

22.19

Weight (kDa)

5.03

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 129	1.3e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 130	3e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30570
fragaria_vesca	FvH4_3g10180
malus_domestica	MD01G1121700.v1.1 MD10G1252700.v1.1
prunus_persica	Prupe.4G090800_v2.0.a1
pyrus_communis	pycom05g25440 pycom10g20840
rosa_chinensis	RchiOBHm_Chr5g0016361
rosa_laevigata	RLG00000032246
rosa_multiflora	Rmu_sc0001235.1_g000034 Rmu_sc0012840.1_g000004 Rmu_sc0023137.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060500 Rroxscaffold_1G00060510
rosa_rugosa	Rorug05G0031900
rosa_samantha	Rh5AG125400 Rh5BG124400 Rh5CG136600 Rh5DG124100
rosa_wichuraiana	Rw5G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	135, 548
AccIII	TCCGGA	1 cut(s)	426
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	4 cut(s)	83, 266, 418, 431
AcoI	YGGCCR	2 cut(s)	176, 362
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	161, 260, 284, 310
AluBI	AGCT	5 cut(s)	75, 115, 164, 482, 509
AluI	AGCT	5 cut(s)	75, 115, 164, 482, 509
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	4 cut(s)	83, 266, 418, 431
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	426
AoxI	GGCC	2 cut(s)	176, 362
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	29, 40
AvaII	GGWCC	2 cut(s)	29, 40
BamHI	GGATCC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	231, 364
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	60, 576
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmcAI	AGTACT	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	29, 40
BmgT120I	GGNCC	2 cut(s)	29, 40
BmiI	GGNNCC	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	360
Bse1I	ACTGG	5 cut(s)	31, 179, 513, 535, 552
Bse3DI	GCAATG	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	270
BseGI	GGATG	2 cut(s)	136, 493
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	84, 291
BseNI	ACTGG	5 cut(s)	31, 179, 513, 535, 552
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	178, 364
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	361, 427
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	178, 364
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	88, 205, 210, 271, 423
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	2 cut(s)	178, 364
BspCNI	CTCAG	2 cut(s)	85, 292
BspDI	ATCGAT	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	4 cut(s)	83, 266, 418, 431
BspQI	GCTCTTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	360
BsrI	ACTGG	5 cut(s)	31, 179, 513, 535, 552
BssAI	RCCGGY	1 cut(s)	360
BssMI	GATC	5 cut(s)	88, 205, 210, 271, 423
Bst4CI	ACNGT	2 cut(s)	18, 296
Bst6I	CTCTTC	3 cut(s)	350, 492, 519
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	93, 300
BstF5I	GGATG	2 cut(s)	136, 493
BstKTI	GATC	5 cut(s)	91, 208, 213, 274, 426
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	5 cut(s)	88, 205, 210, 271, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	60, 576
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	88, 423
BstYI	RGATCY	2 cut(s)	88, 423
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	178, 364
BsuTUI	ATCGAT	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	136, 493
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	29, 40
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	8 cut(s)	75, 115, 164, 178, 360, 364, 482, 509
CviKI_1	RGCY	8 cut(s)	75, 115, 164, 178, 360, 364, 482, 509
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	93, 300
DpnI	GATC	5 cut(s)	90, 207, 212, 273, 425
DpnII	GATC	5 cut(s)	88, 205, 210, 271, 423
EaeI	YGGCCR	2 cut(s)	176, 362
Eam1104I	CTCTTC	3 cut(s)	350, 492, 519
EarI	CTCTTC	3 cut(s)	350, 492, 519
Eco32I	GATATC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	29, 40
EcoRI	GAATTC	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	83
FaeI	CATG	1 cut(s)	53
FaiI	YATR	5 cut(s)	45, 51, 185, 326, 399
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	49
FblI	GTMKAC	2 cut(s)	135, 548
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	143, 500
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	178, 364
HapII	CCGG	2 cut(s)	361, 427
Hin1II	CATG	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	3 cut(s)	302, 545, 569
HpaII	CCGG	2 cut(s)	361, 427
Hpy166II	GTNNAC	2 cut(s)	136, 549
Hpy188I	TCNGA	3 cut(s)	7, 130, 210
Hpy188III	TCNNGA	5 cut(s)	86, 92, 281, 299, 427
Hpy8I	GTNNAC	2 cut(s)	136, 549
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	278, 575
HpyCH4III	ACNGT	2 cut(s)	18, 296
HpyCH4V	TGCA	4 cut(s)	62, 221, 406, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	93, 300
Hsp92II	CATG	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	360
KroNI	GCCGGC	1 cut(s)	362
Kzo9I	GATC	5 cut(s)	88, 205, 210, 271, 423
LguI	GCTCTTC	1 cut(s)	350
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	5 cut(s)	90, 207, 212, 273, 425
MboI	GATC	5 cut(s)	88, 205, 210, 271, 423
MboII	GAAGA	4 cut(s)	322, 367, 509, 536
MflI	RGATCY	2 cut(s)	88, 423
MluCI	AATT	1 cut(s)	445
MlyI	GAGTC	2 cut(s)	311, 554
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	237, 243, 285, 343, 495, 551
MroI	TCCGGA	1 cut(s)	426
MroNI	GCCGGC	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	361, 427
MwoI	GCNNNNNNNGC	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	362
NdeII	GATC	5 cut(s)	88, 205, 210, 271, 423
NgoMIV	GCCGGC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	425
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	2 cut(s)	310, 553
PpsI	GAGTC	2 cut(s)	310, 553
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	2 cut(s)	29, 40
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	88, 423
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	5 cut(s)	88, 205, 210, 271, 423
Sau96I	GGNCC	2 cut(s)	29, 40
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	2 cut(s)	311, 554
SetI	ASST	7 cut(s)	77, 117, 166, 197, 254, 484, 511
SfcI	CTRYAG	2 cut(s)	60, 576
SinI	GGWCC	2 cut(s)	29, 40
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	18, 296
TaqI	TCGA	4 cut(s)	20, 103, 270, 519
TasI	AATT	1 cut(s)	445
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	3 cut(s)	504, 537, 582
VpaK11BI	GGWCC	2 cut(s)	29, 40
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	1 cut(s)	85
XmiI	GTMKAC	2 cut(s)	135, 548
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.