Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006324

Physical Location & Seq

Genomic Coordinates Forward (+)

27302379 .. 27304379

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1169000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCAGGTGAATTAAGTATGTTCAAGTTCGTGAAGCCAAGGCTTCGTCCCCATACTACCGATCTCCAAGCCGCCGTCGGGTGGGGCGTTGCCGCCTTCACCGGTGCGCTTTGGCTCGTCCAGCCATTTGATTGGATTAGGAAGACGTTTATTGAGAAGCCGGAGCCCGAAGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.72

Weight (kDa)

9.4

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40765
fragaria_vesca	FvH4_7g26050
malus_domestica	MD01G1169000.v1.1 MD03G1050700.v1.1 MD07G1234900.v1.1
prunus_persica	Prupe.2G265200_v2.0.a1 Prupe.6G040200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372461 RchiOBHm_Chr7g0235281 RchiOBHm_Chr7g0235311
rosa_roxburghii	Rroxscaffold_1G00007850 Rroxscaffold_3G00226130 Rroxscaffold_4G00284900
rosa_rugosa	Rorug01G0372100
rosa_samantha	Rh1AG380600 Rh1BG344200 Rh1CG357600 Rh1DG375400 Rh3AG055300 Rh3CG056100 Rh3DG057400 Rh5AG479800 Rh5BG500900 Rh5CG524000 Rh5DG512900
rosa_wichuraiana	Rw1G033470 Rw5G044610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 93
AfiI	CCNNNNNNNGG	2 cut(s)	78, 81
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	20, 91
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	72, 93
BlsI	GCNGC	2 cut(s)	73, 94
BmiI	GGNNCC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 81
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	78, 81
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	102, 161
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	78, 81
BsmFI	GGGAC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	72, 93
BspLI	GGNNCC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	101
CspAI	ACCGGT	1 cut(s)	101
CviJI	RGCY	8 cut(s)	37, 43, 71, 115, 124, 160, 166, 173
CviKI_1	RGCY	8 cut(s)	37, 43, 71, 115, 124, 160, 166, 173
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	38
FaiI	YATR	2 cut(s)	20, 54
FaqI	GGGAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	72, 93
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	72, 93
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	72, 93
HapII	CCGG	2 cut(s)	102, 161
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	102, 161
HphI	GGTGA	2 cut(s)	20, 91
Hpy188III	TCNNGA	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	146
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	115, 134, 174
MaeII	ACGT	1 cut(s)	146
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	11
MseI	TTAA	1 cut(s)	14
MspI	CCGG	2 cut(s)	102, 161
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	73, 94
PspN4I	GGNNCC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	72, 93
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	3 cut(s)	10, 149, 175
SgrAI	CRCCGGYG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	2 cut(s)	72, 93
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	1 cut(s)	149
TasI	AATT	1 cut(s)	11
TauI	GCSGC	2 cut(s)	74, 95
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.