Rorug01G0372100

Ubiquinol-cytochrome c reductase complex 6.7 kDa protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006324
Physical Location & Seq
Forward (+)
48575010 .. 48578191
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0372100.1

Sequence Viewer

Length: 849 bp
ATGAGGAGGTACAGCCCAGAGTACTACAGTCCTCCGAGGAGAGGCTACGGCGGCGGCGGTGGTGGCCGGGGAAGAAGCCCGCCGAGGAAGCGCAGGGAGCAGAATAACGGAAGCCTTTTGGTCCGGAACATTCCTCTGGATTGCAGGCCGGAAGAGCTGAGGGTTCCCTTCGAGAGATTTGGGCTTGTTCGGGATGTCTACATCCCCAAGGATTACTACACTGGGCAACCTCGGGGATTTGCATTCGTGCAATTTGTGGATTCTTATGAAGCTGCAGAGGCTCAGTATCATATGAATGGGAAAATTTTTGCTGGGAGGGAGATATCTGTGGTTCTTGCTGCAGAGACGAGGAAAAGACCAGAGGAGATGCGCCAAAGAACTAGGGTCAGAGGGCCATCATCAGGCTATGGGGACAGAAGATCATCTCATTATGGACGTTCTCGTTCTCGTTCACGCTCTCCACACTATCCATCAGGTTCGAGAAGTCGGTACCGCTCAAGGTCCTATTCTCCTGCTCCAAGACGACGAGGTGATTCTGTTTCGCCAGTTAGAAGGCGTGGTGACCACCCAAGGTCACCCCGTGATCATCCACGTTCACCACTTGACCACCCAAGGTCATCAAGGGATTCTCCCCTTGAGAGAGGCGGTGATCATGATCGAAGGCCATATTCTCCAGGTTATGACAATGGTGCTGGGCAAGCTGAAAATGGAGAAGGGTATGACAAGAAATCGAGGTACGATGAGGAGATTGAACCACGAGGCAATTGGAGATCTCCTGATAAAGCATCAAGATCACCATCTGGTTCTAGATCCAGATCTGCTGAGTTATCACCTAGGCGCAGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

32.37

Weight (kDa)

10.88

Isoelectric Point (pI)

106.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 39 - 108 3.4e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 123
AciI CCGC 6 cut(s) 51, 54, 57, 80, 493, 645
AclWI GGATC 1 cut(s) 804
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 4 cut(s) 11, 23, 491, 737
AfiI CCNNNNNNNGG 2 cut(s) 41, 401
AgsI TTSAA 1 cut(s) 752
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 3 cut(s) 157, 272, 701
AluI AGCT 3 cut(s) 157, 272, 701
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 804
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 123
AoxI GGCC 4 cut(s) 64, 146, 392, 662
ApeKI GCWGC 3 cut(s) 272, 338, 840
ApoI RAATTY 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 489
AspA2I CCTAGG 1 cut(s) 833
AspLEI GCGC 3 cut(s) 93, 372, 840
AspS9I GGNCC 3 cut(s) 121, 392, 501
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 7 cut(s) 542, 567, 572, 588, 659, 786, 822
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 121, 501
AvrII CCTAGG 1 cut(s) 833
BanI GGYRCC 1 cut(s) 489
BauI CACGAG 1 cut(s) 756
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 259, 325
BccI CCATC 3 cut(s) 403, 478, 805
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 675
BclI TGATCA 2 cut(s) 583, 649
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 3 cut(s) 381, 807, 834
BfmI CTRYAG 3 cut(s) 25, 273, 339
BglII AGATCT 2 cut(s) 770, 815
BisI GCNGC 5 cut(s) 52, 55, 273, 339, 841
BlnI CCTAGG 1 cut(s) 833
BlsI GCNGC 5 cut(s) 53, 56, 274, 340, 842
BmcAI AGTACT 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 68, 675
Bme18I GGWCC 2 cut(s) 121, 501
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 121, 392, 501
BmiI GGNNCC 2 cut(s) 165, 491
BmrFI CCNGG 2 cut(s) 68, 675
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 357, 794
BmuI ACTGGG 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 657
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 481, 656
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 3 cut(s) 654, 796, 814
BsaJI CCNNGG 8 cut(s) 35, 67, 83, 207, 230, 569, 611, 833
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 401
Bse1I ACTGG 2 cut(s) 226, 545
Bse8I GATNNNNATC 3 cut(s) 654, 796, 814
BseAI TCCGGA 1 cut(s) 123
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 8 cut(s) 35, 67, 83, 207, 230, 569, 611, 833
BseGI GGATG 3 cut(s) 199, 201, 586
BseJI GATNNNNATC 3 cut(s) 654, 796, 814
BseLI CCNNNNNNNGG 2 cut(s) 41, 401
BseMII CTCAG 3 cut(s) 149, 296, 813
BseNI ACTGG 2 cut(s) 226, 545
BseRI GAGGAG 4 cut(s) 19, 52, 377, 758
BseXI GCAGC 2 cut(s) 259, 325
BseYI CCCAGC 2 cut(s) 311, 692
BshFI GGCC 4 cut(s) 66, 148, 394, 664
BshNI GGYRCC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 3 cut(s) 67, 124, 149
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 41, 401
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 4 cut(s) 66, 148, 394, 664
BsoBI CYCGRG 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
BspACI CCGC 6 cut(s) 51, 54, 57, 80, 493, 645
BspANI GGCC 4 cut(s) 66, 148, 394, 664
BspCNI CTCAG 3 cut(s) 150, 295, 814
BspEI TCCGGA 1 cut(s) 123
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 165, 491
BspMAI CTGCAG 2 cut(s) 277, 343
BspPI GGATC 1 cut(s) 804
BspQI GCTCTTC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 495
BsrI ACTGG 2 cut(s) 226, 545
BssECI CCNNGG 8 cut(s) 35, 67, 83, 207, 230, 569, 611, 833
BssMI GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 4 cut(s) 207, 569, 611, 833
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 80, 146, 699
BstDEI CTNAG 3 cut(s) 158, 282, 822
BstEII GGTNACC 2 cut(s) 560, 573
BstF5I GGATG 3 cut(s) 199, 201, 586
BstHHI GCGC 3 cut(s) 93, 372, 840
BstKTI GATC 8 cut(s) 422, 586, 652, 658, 773, 794, 812, 818
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
BstMWI GCNNNNNNNGC 7 cut(s) 51, 63, 88, 97, 154, 278, 698
BstNI CCWGG 1 cut(s) 675
BstPI GGTNACC 2 cut(s) 560, 573
BstSCI CCNGG 2 cut(s) 66, 673
BstSFI CTRYAG 3 cut(s) 25, 273, 339
BstV1I GCAGC 2 cut(s) 259, 325
BstX2I RGATCY 3 cut(s) 770, 809, 815
BstYI RGATCY 3 cut(s) 770, 809, 815
BsuRI GGCC 4 cut(s) 66, 148, 394, 664
BtsCI GGATG 3 cut(s) 199, 201, 586
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 3 cut(s) 80, 146, 699
CciI TCATGA 1 cut(s) 652
CfoI GCGC 3 cut(s) 93, 372, 840
Cfr13I GGNCC 3 cut(s) 121, 392, 501
Csp6I GTAC 4 cut(s) 10, 22, 490, 736
CviAII CATG 1 cut(s) 653
CviQI GTAC 4 cut(s) 10, 22, 490, 736
DdeI CTNAG 3 cut(s) 158, 282, 822
DpnI GATC 8 cut(s) 421, 585, 651, 657, 772, 793, 811, 817
DpnII GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
DraIII CACNNNGTG 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 4 cut(s) 207, 569, 611, 833
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 121, 501
Eco88I CYCGRG 1 cut(s) 231
Eco91I GGTNACC 2 cut(s) 560, 573
EcoO109I RGGNCCY 1 cut(s) 501
EcoO65I GGTNACC 2 cut(s) 560, 573
EcoRII CCWGG 1 cut(s) 673
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 4 cut(s) 207, 569, 611, 833
ErhI CCWWGG 4 cut(s) 207, 569, 611, 833
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 1 cut(s) 656
FaiI YATR 9 cut(s) 267, 291, 293, 408, 432, 654, 667, 681, 720
FaqI GGGAC 1 cut(s) 425
FatI CATG 1 cut(s) 652
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 291
FbaI TGATCA 2 cut(s) 583, 649
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 52, 55, 273, 339, 841
FokI GGATG 3 cut(s) 188, 206, 573
Fsp4HI GCNGC 5 cut(s) 52, 55, 273, 339, 841
FspBI CTAG 3 cut(s) 381, 807, 834
GlaI GCGC 3 cut(s) 92, 371, 839
GluI GCNGC 5 cut(s) 52, 55, 273, 339, 841
GsaI CCCAGC 2 cut(s) 315, 696
GsuI CTGGAG 1 cut(s) 657
HaeIII GGCC 4 cut(s) 66, 148, 394, 664
HapII CCGG 3 cut(s) 67, 124, 149
HhaI GCGC 3 cut(s) 93, 372, 840
Hin1II CATG 1 cut(s) 656
Hin6I GCGC 3 cut(s) 91, 370, 838
HinP1I GCGC 3 cut(s) 91, 370, 838
HinfI GANTC 3 cut(s) 260, 533, 626
HpaII CCGG 3 cut(s) 67, 124, 149
HphI GGTGA 7 cut(s) 542, 567, 572, 588, 659, 786, 822
Hpy166II GTNNAC 3 cut(s) 199, 452, 596
Hpy188I TCNGA 2 cut(s) 36, 389
Hpy8I GTNNAC 3 cut(s) 199, 452, 596
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 4 cut(s) 178, 546, 654, 707
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 436, 592
HpyCH4V TGCA 5 cut(s) 144, 242, 250, 275, 341
HpyF10VI GCNNNNNNNGC 7 cut(s) 51, 63, 88, 97, 154, 278, 698
HpyF3I CTNAG 3 cut(s) 158, 282, 822
HpySE526I ACGT 2 cut(s) 436, 592
Hsp92II CATG 1 cut(s) 656
HspAI GCGC 3 cut(s) 91, 370, 838
Kpn2I TCCGGA 1 cut(s) 123
KpnI GGTACC 1 cut(s) 493
Ksp22I TGATCA 2 cut(s) 583, 649
Kzo9I GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 97, 520
Lsp1109I GCAGC 2 cut(s) 259, 325
LweI GCATC 2 cut(s) 357, 794
MaeI CTAG 3 cut(s) 381, 807, 834
MaeII ACGT 2 cut(s) 436, 592
MaeIII GTNAC 2 cut(s) 560, 573
MalI GATC 8 cut(s) 421, 585, 651, 657, 772, 793, 811, 817
MbiI CCGCTC 1 cut(s) 495
MboI GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
MboII GAAGA 3 cut(s) 84, 164, 429
MfeI CAATTG 1 cut(s) 763
MflI RGATCY 3 cut(s) 770, 809, 815
MluCI AATT 3 cut(s) 251, 303, 763
MroI TCCGGA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 3 cut(s) 67, 124, 149
MspR9I CCNGG 2 cut(s) 68, 675
MunI CAATTG 1 cut(s) 763
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 7 cut(s) 51, 63, 88, 97, 154, 278, 698
NciI CCSGG 1 cut(s) 68
NdeI CATATG 1 cut(s) 291
NdeII GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
NlaIII CATG 1 cut(s) 656
NlaIV GGNNCC 2 cut(s) 165, 491
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 560, 573
PagI TCATGA 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 260, 533, 626
PkrI GCNGC 5 cut(s) 53, 56, 274, 340, 842
PpuMI RGGWCCY 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 673
PspEI GGTNACC 2 cut(s) 560, 573
PspFI CCCAGC 2 cut(s) 311, 692
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 165, 491
PspPI GGNCC 3 cut(s) 121, 392, 501
PspPPI RGGWCCY 1 cut(s) 501
PstI CTGCAG 2 cut(s) 277, 343
PsuI RGATCY 3 cut(s) 770, 809, 815
RsaI GTAC 4 cut(s) 11, 23, 491, 737
RsaNI GTAC 4 cut(s) 10, 22, 490, 736
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 5 cut(s) 52, 55, 273, 339, 841
Sau3AI GATC 8 cut(s) 419, 583, 649, 655, 770, 791, 809, 815
Sau96I GGNCC 3 cut(s) 121, 392, 501
ScaI AGTACT 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 68, 675
SfaNI GCATC 2 cut(s) 357, 794
SfcI CTRYAG 3 cut(s) 25, 273, 339
SinI GGWCC 2 cut(s) 121, 501
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 496, 635
SmoI CTYRAG 2 cut(s) 496, 635
Sse9I AATT 3 cut(s) 251, 303, 763
SsiI CCGC 6 cut(s) 51, 54, 57, 80, 493, 645
SspMI CTAG 3 cut(s) 381, 807, 834
StyD4I CCNGG 2 cut(s) 66, 673
StyI CCWWGG 4 cut(s) 207, 569, 611, 833
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 439, 595
TaqI TCGA 4 cut(s) 171, 479, 658, 731
TasI AATT 3 cut(s) 251, 303, 763
TatI WGTACW 1 cut(s) 21
TauI GCSGC 2 cut(s) 54, 57
TfiI GAWTC 3 cut(s) 260, 533, 626
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 560, 573
TseI GCWGC 3 cut(s) 272, 338, 840
Tsp45I GTSAC 2 cut(s) 560, 573
TspDTI ATGAA 2 cut(s) 282, 308
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 121, 501
XapI RAATTY 1 cut(s) 303
XbaI TCTAGA 1 cut(s) 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmaJI CCTAGG 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 3 cut(s) 381, 807, 834
ZrmI AGTACT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.