Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006324

Physical Location & Seq

Genomic Coordinates Forward (+)

3895880 .. 3898991

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAATGAAATTGATCTATGGGATAAAATTAGTCTGTGTTATTCAGTAATTCCAATAAACACCTTGGATATCCAAGCCGCTGCCTTGTGGGGTGTCGCCGCCGGCACCACCACTCTTTGGGTCGTCCAGAATTCATCCACAAGGATTGCTGCAAACAATCTAACTAGTCAAATTCCTCGATCGAGCCAGAATCCTACTTCCATCGTTTTGTTTGACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

7.95

Weight (kDa)

4.36

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40765
fragaria_vesca	FvH4_7g26050
malus_domestica	MD01G1169000.v1.1 MD03G1050700.v1.1 MD07G1234900.v1.1
prunus_persica	Prupe.2G265200_v2.0.a1 Prupe.6G040200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372461 RchiOBHm_Chr7g0235281 RchiOBHm_Chr7g0235311
rosa_roxburghii	Rroxscaffold_1G00007850 Rroxscaffold_3G00226130 Rroxscaffold_4G00284900
rosa_rugosa	Rorug01G0372100
rosa_samantha	Rh1AG380600 Rh1BG344200 Rh1CG357600 Rh1DG375400 Rh3AG055300 Rh3CG056100 Rh3DG057400 Rh5AG479800 Rh5BG500900 Rh5CG524000 Rh5DG512900
rosa_wichuraiana	Rw1G033470 Rw5G044610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	117
AciI	CCGC	2 cut(s)	78, 99
AcsI	RAATTY	2 cut(s)	130, 171
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	117
AhlI	ACTAGT	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	80, 149
ApoI	RAATTY	2 cut(s)	130, 171
BanI	GGYRCC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	67, 136
BccI	CCATC	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	4 cut(s)	78, 81, 99, 150
BlsI	GCNGC	4 cut(s)	79, 82, 100, 151
BmiI	GGNNCC	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	67, 136
Bsh1285I	CGRYCG	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	13, 179
BspACI	CCGC	2 cut(s)	78, 99
BspLI	GGNNCC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	13, 179
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	16, 182
BstMBI	GATC	2 cut(s)	13, 179
BstMCI	CGRYCG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	67, 136
BtsCI	GGATG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	101
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviJI	RGCY	2 cut(s)	77, 186
CviKI_1	RGCY	2 cut(s)	77, 186
DpnI	GATC	2 cut(s)	15, 181
DpnII	GATC	2 cut(s)	13, 179
Eco130I	CCWWGG	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	78, 81, 99, 150
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	4 cut(s)	78, 81, 99, 150
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	78, 81, 99, 150
HapII	CCGG	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	13, 179
LpnPI	CCDG	3 cut(s)	115, 140, 200
Lsp1109I	GCAGC	2 cut(s)	67, 136
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	216
MalI	GATC	2 cut(s)	15, 181
MboI	GATC	2 cut(s)	13, 179
MluCI	AATT	5 cut(s)	9, 27, 48, 130, 171
MnlI	CCTC	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	102
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	13, 179
NgoMIV	GCCGGC	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	79, 82, 100, 151
Ple19I	CGATCG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	182
SatI	GCNGC	4 cut(s)	78, 81, 99, 150
Sau3AI	GATC	2 cut(s)	13, 179
SetI	ASST	2 cut(s)	65, 219
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	5 cut(s)	9, 27, 48, 130, 171
SsiI	CCGC	2 cut(s)	78, 99
SspMI	CTAG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	178, 182
TasI	AATT	5 cut(s)	9, 27, 48, 130, 171
TauI	GCSGC	2 cut(s)	80, 101
TfiI	GAWTC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	80, 149
TspDTI	ATGAA	3 cut(s)	17, 21, 123
Van91I	CCANNNNNTGG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	130, 171
XspI	CTAG	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.