Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006324

Physical Location & Seq

Genomic Coordinates Reverse (-)

4030295 .. 4031012

Gene Structure 718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1050700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGCAGGTGGACTCGCTGCGCGTTTTTGGAAGCTCCCGGTGCCTCAATCCTCCGATGTAAAGGCCGCCGCCATGTGGGGCGTCGCGGCCGGCACCGGCGCTCTTTGGTTCGTCCAGCCGTTTGATTGGATAAAGAAGACATTTTTCGAGAAGCCTGCTTCGGCTGAAGGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

59

Amino Acids

6.26

Weight (kDa)

9.4

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40765
fragaria_vesca	FvH4_7g26050
malus_domestica	MD01G1169000.v1.1 MD03G1050700.v1.1 MD07G1234900.v1.1
prunus_persica	Prupe.2G265200_v2.0.a1 Prupe.6G040200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372461 RchiOBHm_Chr7g0235281 RchiOBHm_Chr7g0235311
rosa_roxburghii	Rroxscaffold_1G00007850 Rroxscaffold_3G00226130 Rroxscaffold_4G00284900
rosa_rugosa	Rorug01G0372100
rosa_samantha	Rh1AG380600 Rh1BG344200 Rh1CG357600 Rh1DG375400 Rh3AG055300 Rh3CG056100 Rh3DG057400 Rh5AG479800 Rh5BG500900 Rh5CG524000 Rh5DG512900
rosa_wichuraiana	Rw1G033470 Rw5G044610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 92
AccII	CGCG	2 cut(s)	22, 86
AciI	CCGC	3 cut(s)	66, 69, 86
AcoI	YGGCCR	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AoxI	GGCC	3 cut(s)	63, 87, 169
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	22, 101
AsuC2I	CCSGG	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	40, 92
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcnI	CCSGG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	4 cut(s)	18, 66, 69, 87
BlsI	GCNGC	4 cut(s)	19, 67, 70, 88
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	42, 94
BmrFI	CCNGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	2 cut(s)	89, 95
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	22, 86
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	65, 89, 171
BshNI	GGYRCC	2 cut(s)	40, 92
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	38, 90, 96
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	3 cut(s)	65, 89, 171
BspACI	CCGC	3 cut(s)	66, 69, 86
BspANI	GGCC	3 cut(s)	65, 89, 171
BspFNI	CGCG	2 cut(s)	22, 86
BspLI	GGNNCC	2 cut(s)	42, 94
BspT107I	GGYRCC	2 cut(s)	40, 92
BsrFI	RCCGGY	2 cut(s)	89, 95
BssAI	RCCGGY	2 cut(s)	89, 95
BssNI	GRCGYC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	91, 156
BstFNI	CGCG	2 cut(s)	22, 86
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	22, 101
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	2 cut(s)	22, 86
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	65, 89, 171
Cac8I	GCNNGC	2 cut(s)	91, 156
CfoI	GCGC	2 cut(s)	22, 101
Cfr10I	RCCGGY	2 cut(s)	89, 95
CseI	GACGC	1 cut(s)	70
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	7 cut(s)	34, 65, 89, 118, 154, 164, 171
CviKI_1	RGCY	7 cut(s)	34, 65, 89, 118, 154, 164, 171
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	87
Eco52I	CGGCCG	1 cut(s)	87
FaeI	CATG	1 cut(s)	76
FaiI	YATR	1 cut(s)	74
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	18, 66, 69, 87
Fsp4HI	GCNGC	4 cut(s)	18, 66, 69, 87
GlaI	GCGC	2 cut(s)	21, 100
GluI	GCNGC	4 cut(s)	18, 66, 69, 87
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	65, 89, 171
HapII	CCGG	3 cut(s)	38, 90, 96
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	22, 101
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	20, 99
HinP1I	GCGC	2 cut(s)	20, 99
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	38, 90, 96
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	20, 99
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	51, 103, 109, 128, 168
Lsp1109I	GCAGC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	6
MnlI	CCTC	2 cut(s)	54, 61
MroNI	GCCGGC	1 cut(s)	89
MspI	CCGG	3 cut(s)	38, 90, 96
MspR9I	CCNGG	1 cut(s)	38
MvnI	CGCG	2 cut(s)	22, 86
MwoI	GCNNNNNNNGC	1 cut(s)	40
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	38
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	42, 94
PdiI	GCCGGC	1 cut(s)	91
PkrI	GCNGC	4 cut(s)	19, 67, 70, 88
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	42, 94
SatI	GCNGC	4 cut(s)	18, 66, 69, 87
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	2 cut(s)	10, 36
SgrAI	CRCCGGYG	1 cut(s)	95
SsiI	CCGC	3 cut(s)	66, 69, 86
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	147
TauI	GCSGC	3 cut(s)	68, 71, 89
TseI	GCWGC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.