Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006324

Physical Location & Seq

Genomic Coordinates Forward (+)

82388941 .. 82390152

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG479800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCAGGTGTAATTGCATCTCGATCGAGCCGTCTCTCGAAGCTTCTCAGCCCTCCATCCACCGACCTCAAGGCCGCCGCCATGTGGGGCGTCGCCGCCGGCACCGGGGCTCTTTGGTTCGTCCAGCCCTTTGATTGGTTGAAGAAGACATTTCTGGAGAAGCCAGAGACCCAAGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.48

Weight (kDa)

9.82

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40765
fragaria_vesca	FvH4_7g26050
malus_domestica	MD01G1169000.v1.1 MD03G1050700.v1.1 MD07G1234900.v1.1
prunus_persica	Prupe.2G265200_v2.0.a1 Prupe.6G040200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372461 RchiOBHm_Chr7g0235281 RchiOBHm_Chr7g0235311
rosa_roxburghii	Rroxscaffold_1G00007850 Rroxscaffold_3G00226130 Rroxscaffold_4G00284900
rosa_rugosa	Rorug01G0372100
rosa_samantha	Rh1AG380600 Rh1BG344200 Rh1CG357600 Rh1DG375400 Rh3AG055300 Rh3CG056100 Rh3DG057400 Rh5AG479800 Rh5BG500900 Rh5CG524000 Rh5DG512900
rosa_wichuraiana	Rw1G033470 Rw5G044610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	3 cut(s)	75, 78, 96
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	84, 105, 135
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	38, 161
AoxI	GGCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	152
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	38, 161
BisI	GCNGC	3 cut(s)	75, 78, 96
BlsI	GCNGC	3 cut(s)	76, 79, 97
Bme1390I	CCNGG	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	105, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 105, 135
Bse118I	RCCGGY	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	105, 172
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	84, 105, 135
BseMII	CTCAG	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	99, 105
BslI	CCNNNNNNNGG	3 cut(s)	84, 105, 135
BsmAI	GTCTC	2 cut(s)	38, 161
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	75, 78, 96
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	105, 172
BssMI	GATC	1 cut(s)	23
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	38, 161
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	98
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	7 cut(s)	30, 43, 51, 74, 110, 127, 163
CviKI_1	RGCY	7 cut(s)	30, 43, 51, 74, 110, 127, 163
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	75, 78, 96
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	3 cut(s)	75, 78, 96
GluI	GCNGC	3 cut(s)	75, 78, 96
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	99, 105
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	41
HpaII	CCGG	2 cut(s)	99, 105
Hpy188III	TCNNGA	3 cut(s)	21, 37, 155
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	112, 118, 137, 140, 177
LweI	GCATC	1 cut(s)	26
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	2 cut(s)	154, 157
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	2 cut(s)	63, 77
MroNI	GCCGGC	1 cut(s)	98
MspI	CCGG	2 cut(s)	99, 105
MspR9I	CCNGG	1 cut(s)	106
NaeI	GCCGGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	76, 79, 97
Ple19I	CGATCG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	26
SatI	GCNGC	3 cut(s)	75, 78, 96
Sau3AI	GATC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	3 cut(s)	10, 45, 69
SfaNI	GCATC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	3 cut(s)	75, 78, 96
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	172
TaqI	TCGA	3 cut(s)	22, 26, 38
TasI	AATT	1 cut(s)	12
TauI	GCSGC	3 cut(s)	77, 80, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.