Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006324

Physical Location & Seq

Genomic Coordinates Reverse (-)

3005500 .. 3006483

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G040200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCAGGGGGAATCGCAGCGGCATCGTCACGTTTCTCGAAGCTTCCGAGGCCTCAATCCTCCGATGTAAAAGCGGTCGCTATGTGGGGCGTCGCCGCCGGCACTGGCGCTCTTTGGTTCATCCAGCCATTTGATTGGATAAAGAAGACATTTCTGGAGAAGCCTGTGACAAATGAAGGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

62

Amino Acids

6.55

Weight (kDa)

9.82

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40765
fragaria_vesca	FvH4_7g26050
malus_domestica	MD01G1169000.v1.1 MD03G1050700.v1.1 MD07G1234900.v1.1
prunus_persica	Prupe.2G265200_v2.0.a1 Prupe.6G040200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372461 RchiOBHm_Chr7g0235281 RchiOBHm_Chr7g0235311
rosa_roxburghii	Rroxscaffold_1G00007850 Rroxscaffold_3G00226130 Rroxscaffold_4G00284900
rosa_rugosa	Rorug01G0372100
rosa_samantha	Rh1AG380600 Rh1BG344200 Rh1CG357600 Rh1DG375400 Rh3AG055300 Rh3CG056100 Rh3DG057400 Rh5AG479800 Rh5BG500900 Rh5CG524000 Rh5DG512900
rosa_wichuraiana	Rw1G033470 Rw5G044610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 74, 96
AcyI	GRCGYC	1 cut(s)	90
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
AoxI	GGCC	2 cut(s)	50, 178
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	3 cut(s)	18, 21, 96
BlsI	GCNGC	3 cut(s)	19, 22, 97
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	109, 181
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	109, 181
BseXI	GCAGC	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	52, 180
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	99
BsnI	GGCC	2 cut(s)	52, 180
BspACI	CCGC	3 cut(s)	20, 74, 96
BspANI	GGCC	2 cut(s)	52, 180
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	109, 181
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	47
BssNI	GRCGYC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	52, 180
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	98
CseI	GACGC	1 cut(s)	79
CviJI	RGCY	5 cut(s)	43, 52, 127, 163, 180
CviKI_1	RGCY	5 cut(s)	43, 52, 127, 163, 180
Eco147I	AGGCCT	1 cut(s)	52
FaiI	YATR	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	18, 21, 96
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	18, 21, 96
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	18, 21, 96
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	52, 180
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	48, 64
Hpy188III	TCNNGA	2 cut(s)	37, 155
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	1 cut(s)	108
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	90, 112, 137, 140, 177
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	27, 166
MboII	GAAGA	1 cut(s)	157
MnlI	CCTC	3 cut(s)	42, 63, 70
MroNI	GCCGGC	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	98
NmuCI	GTSAC	2 cut(s)	27, 166
PceI	AGGCCT	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	19, 22, 97
SatI	GCNGC	3 cut(s)	18, 21, 96
SetI	ASST	2 cut(s)	34, 45
SfaNI	GCATC	1 cut(s)	32
SgeI	CNNG	9 cut(s)	18, 42, 49, 60, 111, 117, 136, 167, 176
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	3 cut(s)	20, 74, 96
StuI	AGGCCT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	38
TauI	GCSGC	2 cut(s)	23, 98
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	27, 166
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	27, 166
TspDTI	ATGAA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.