Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006324

Physical Location & Seq

Genomic Coordinates Forward (+)

30832706 .. 30834465

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCAGGTGAATTGAGCATGTTCAAGTTCGTGAAGCCAAGGCTTCGTCCCCATACTACCGATGTCCAAGCCGCCGCCGCGTGGGGCGTCGCCGCCTTTACCGGTGCCCTTTGGCTCGTCCAGCCGTTTGATTGGATTAGGAAGACCTTTATTGAGAAGCCAGAGCCCGAAGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.69

Weight (kDa)

9.4

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40765
fragaria_vesca	FvH4_7g26050
malus_domestica	MD01G1169000.v1.1 MD03G1050700.v1.1 MD07G1234900.v1.1
prunus_persica	Prupe.2G265200_v2.0.a1 Prupe.6G040200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372461 RchiOBHm_Chr7g0235281 RchiOBHm_Chr7g0235311
rosa_roxburghii	Rroxscaffold_1G00007850 Rroxscaffold_3G00226130 Rroxscaffold_4G00284900
rosa_rugosa	Rorug01G0372100
rosa_samantha	Rh1AG380600 Rh1BG344200 Rh1CG357600 Rh1DG375400 Rh3AG055300 Rh3CG056100 Rh3DG057400 Rh5AG479800 Rh5BG500900 Rh5CG524000 Rh5DG512900
rosa_wichuraiana	Rw1G033470 Rw5G044610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	72, 75, 78, 93
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	72, 75, 78, 93
BlsI	GCNGC	4 cut(s)	73, 76, 79, 94
BmiI	GGNNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	109, 168
BspACI	CCGC	4 cut(s)	72, 75, 78, 93
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	38
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 121
BstNSI	RCATGY	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	101
CseI	GACGC	1 cut(s)	76
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	8 cut(s)	37, 43, 71, 115, 124, 160, 166, 173
CviKI_1	RGCY	8 cut(s)	37, 43, 71, 115, 124, 160, 166, 173
DdeI	CTNAG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 54
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	72, 75, 78, 93
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	72, 75, 78, 93
GluI	GCNGC	4 cut(s)	72, 75, 78, 93
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	22
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 121
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	115, 134, 174
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	109, 168
MluCI	AATT	1 cut(s)	11
MspI	CCGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	77, 121
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	73, 76, 79, 94
PspN4I	GGNNCC	1 cut(s)	106
SatI	GCNGC	4 cut(s)	72, 75, 78, 93
SduI	GDGCHC	2 cut(s)	109, 168
SetI	ASST	3 cut(s)	10, 149, 175
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	4 cut(s)	72, 75, 78, 93
StyI	CCWWGG	1 cut(s)	38
TasI	AATT	1 cut(s)	11
TauI	GCSGC	4 cut(s)	74, 77, 80, 95
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.